PDB Chemical Component XYL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XYL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.515	1.529
C1	O1	1.283	1.428
C1	H11	1.115	1.091
C1	H12	1.116	1.090
C2	C3	1.537	1.529
C2	O2	1.372	1.429
C2	H2	1.116	1.090
C3	C4	1.528	1.529
C3	O3	1.419	1.428
C3	H3	1.115	1.091
C4	C5	1.526	1.529
C4	O4	1.418	1.429
C4	H4	1.115	1.090
C5	O5	1.402	1.428
C5	H51	1.115	1.091
C5	H52	1.115	1.090
O1	HO1	0.950	0.966
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O5	HO5	0.951	0.966

Bond Angles for XYL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	106.4	109.6
C2	C1	H11	113.4	109.4
C2	C1	H12	113.4	109.5
C1	C2	C3	110.0	109.6
C1	C2	O2	108.3	109.4
C1	C2	H2	109.2	109.5
O1	C1	H11	113.4	109.4
O1	C1	H12	113.4	109.5
C1	O1	HO1	106.3	106.9
H11	C1	H12	97.1	109.4
C3	C2	O2	107.5	109.4
C3	C2	H2	110.0	109.5
C2	C3	C4	111.9	109.6
C2	C3	O3	113.0	109.5
C2	C3	H3	105.6	109.4
O2	C2	H2	111.7	109.4
C2	O2	HO2	108.3	106.7
C4	C3	O3	110.5	109.5
C4	C3	H3	108.3	109.4
C3	C4	C5	114.6	109.6
C3	C4	O4	113.9	109.4
C3	C4	H4	102.0	109.5
O3	C3	H3	107.1	109.4
C3	O3	HO3	113.0	106.8
C5	C4	O4	107.9	109.4
C5	C4	H4	108.7	109.5
C4	C5	O5	117.0	109.6
C4	C5	H51	109.5	109.4
C4	C5	H52	109.5	109.5
O4	C4	H4	109.6	109.4
C4	O4	HO4	113.8	106.7
O5	C5	H51	109.5	109.4
O5	C5	H52	109.4	109.5
C5	O5	HO5	117.0	106.9
H51	C5	H52	100.7	109.4

Torsion Angles for XYL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	H11	234.7	120.0
O1	C1	C2	H12	125.3	239.9
C2	C1	O1	HO1	180.1	180.0
H11	C1	C2	H12	250.6	119.9
C3	C2	C1	O2	242.8	240.0
C3	C2	C1	H2	120.9	120.1
C1	C2	C3	C4	193.4	180.0
C1	C2	C3	O3	67.8	59.9
C1	C2	C3	H3	311.1	300.0
O2	C2	C1	H2	238.1	240.1
C1	C2	O2	HO2	180.0	300.0
C2	C1	O1	H11	125.3	240.0
C2	C1	O1	H12	234.7	120.1
O1	C1	C2	C3	187.1	180.0
O1	C1	C2	O2	304.3	300.0
O1	C1	C2	H2	66.2	59.9
H11	C1	O1	H12	109.5	240.1
C2	C1	H11	O1	238.6	120.1
C2	C1	H11	H12	119.3	240.0
H11	C1	C2	C3	312.4	60.0
H11	C1	C2	O2	69.6	180.0
H11	C1	C2	H2	191.5	299.9
O1	C1	H11	H12	240.7	120.0
H11	C1	O1	HO1	54.8	300.0
C2	C1	H12	O1	121.4	239.9
C2	C1	H12	H11	240.7	119.9
H12	C1	C2	C3	61.8	300.1
H12	C1	C2	O2	179.1	60.1
H12	C1	C2	H2	301.0	180.0
O1	C1	H12	H11	119.3	240.1
H12	C1	O1	HO1	305.3	59.9
C3	C2	C1	O1	187.1	180.0
C3	C2	C1	H11	312.4	60.0
C3	C2	C1	H12	61.8	300.1
C1	C2	C3	O2	117.8	120.0
C1	C2	C3	H2	239.6	239.9
O2	C2	C3	H2	121.9	119.9
C3	C2	O2	HO2	298.9	60.0
C4	C3	C2	O3	125.5	120.1
C4	C3	C2	H3	242.3	240.0
C2	C3	C4	C5	160.5	180.0
C2	C3	C4	O4	285.3	300.0
C2	C3	C4	H4	43.3	59.9
O3	C3	C2	H3	116.8	119.9
C2	C3	O3	HO3	180.0	60.1
O2	C2	C1	O1	304.3	300.0
O2	C2	C1	H11	69.6	180.0
O2	C2	C1	H12	179.1	60.1
C1	C2	O2	C3	241.1	239.9
C1	C2	O2	H2	120.4	120.0
C3	C2	O2	H2	239.2	240.0
O2	C2	C3	C4	75.6	60.0
O2	C2	C3	O3	310.1	299.9
O2	C2	C3	H3	193.3	180.0
H2	C2	C1	O1	66.2	59.9
H2	C2	C1	H11	191.5	299.9
H2	C2	C1	H12	301.0	180.0
C1	C2	H2	C3	120.9	120.1
C1	C2	H2	O2	240.2	240.1
C3	C2	H2	O2	119.3	119.9
H2	C2	C3	C4	313.8	300.1
H2	C2	C3	O3	188.2	180.0
H2	C2	C3	H3	71.4	60.1
H2	C2	O2	HO2	59.7	180.0
C4	C3	C2	O2	75.6	60.0
C4	C3	C2	H2	313.8	300.1
C2	C3	C4	O3	233.1	239.9
C2	C3	C4	H3	116.0	120.0
O3	C3	C4	H3	242.9	240.1
C4	C3	O3	HO3	53.7	299.9
C5	C4	C3	O4	235.2	240.0
C5	C4	C3	H4	117.2	120.1
C3	C4	C5	O5	303.3	180.0
C3	C4	C5	H51	68.6	300.0
C3	C4	C5	H52	178.1	59.9
O4	C4	C3	H4	242.1	240.1
C3	C4	O4	HO4	180.0	300.0
O3	C3	C2	O2	310.1	299.9
O3	C3	C2	H2	188.2	180.0
C2	C3	O3	C4	126.3	120.1
C2	C3	O3	H3	244.1	240.1
C4	C3	O3	H3	117.8	119.9
O3	C3	C4	C5	287.4	300.1
O3	C3	C4	O4	52.2	60.1
O3	C3	C4	H4	170.2	180.0
H3	C3	C2	O2	193.3	180.0
H3	C3	C2	H2	71.4	60.1
C2	C3	H3	C4	240.0	239.9
C2	C3	H3	O3	120.7	120.0
C4	C3	H3	O3	240.8	240.0
H3	C3	C4	C5	44.5	60.0
H3	C3	C4	O4	169.3	180.0
H3	C3	C4	H4	287.2	299.9
H3	C3	O3	HO3	295.9	180.0
C5	C4	C3	O3	287.4	300.1
C5	C4	C3	H3	44.5	60.0
C3	C4	C5	O4	127.9	120.0
C3	C4	C5	H4	246.7	239.9
O4	C4	C5	H4	118.7	119.9
C5	C4	O4	HO4	308.4	60.0
O5	C5	C4	H51	234.7	240.0
O5	C5	C4	H52	125.2	120.1
C4	C5	O5	HO5	180.0	180.0
H51	C5	C4	H52	250.5	240.1
O4	C4	C3	O3	52.2	60.1
O4	C4	C3	H3	169.3	180.0
C3	C4	O4	C5	231.7	239.9
C3	C4	O4	H4	113.5	120.0
C5	C4	O4	H4	241.8	240.0
O4	C4	C5	O5	175.3	60.0
O4	C4	C5	H51	300.6	180.0
O4	C4	C5	H52	50.1	299.9
H4	C4	C3	O3	170.2	180.0
H4	C4	C3	H3	287.2	299.9
C3	C4	H4	C5	121.4	120.1
C3	C4	H4	O4	239.0	240.1
C5	C4	H4	O4	117.6	119.9
H4	C4	C5	O5	56.6	300.1
H4	C4	C5	H51	181.9	60.1
H4	C4	C5	H52	291.4	180.0
H4	C4	O4	HO4	66.6	180.0
O5	C5	C4	O4	175.3	60.0
O5	C5	C4	H4	56.6	300.1
C4	C5	O5	H51	125.3	120.0
C4	C5	O5	H52	234.7	239.9
H51	C5	O5	H52	109.4	119.9
H51	C5	C4	O4	300.6	180.0
H51	C5	C4	H4	181.9	60.1
C4	C5	H51	O5	230.5	239.9
C4	C5	H51	H52	115.3	120.0
O5	C5	H51	H52	244.8	240.0
H51	C5	O5	HO5	54.7	60.0
H52	C5	C4	O4	50.1	299.9
H52	C5	C4	H4	291.4	180.0
C4	C5	H52	O5	129.5	120.1
C4	C5	H52	H51	244.7	240.1
O5	C5	H52	H51	115.2	119.9
H52	C5	O5	HO5	305.3	300.1
HO1	O1	C1	H11	54.8	300.0
HO1	O1	C1	H12	305.3	59.9
HO2	O2	C2	H2	59.7	180.0
HO3	O3	C3	H3	295.9	180.0
HO4	O4	C4	H4	66.6	180.0
HO5	O5	C5	H51	54.7	60.0
HO5	O5	C5	H52	305.3	300.1