PDB Chemical Component XYC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XYC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C08 |
C04 |
1.534 |
1.549 |
| C08 |
C07 |
1.519 |
1.549 |
| N |
CA |
1.476 |
1.469 |
| C04 |
CB |
1.532 |
1.530 |
| C04 |
C05 |
1.525 |
1.543 |
| CB |
CA |
1.528 |
1.530 |
| C07 |
C06 |
1.530 |
1.543 |
| O |
C |
1.215 |
1.208 |
| CA |
C |
1.519 |
1.507 |
| C05 |
C06 |
1.517 |
1.539 |
| CA |
HA |
1.099 |
1.091 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CB |
H6 |
1.100 |
1.090 |
| CB |
H7 |
1.100 |
1.090 |
| C04 |
H8 |
1.100 |
1.090 |
| C08 |
H9 |
1.100 |
1.090 |
| C08 |
H10 |
1.100 |
1.090 |
| C07 |
H11 |
1.100 |
1.090 |
| C07 |
H12 |
1.100 |
1.089 |
| C06 |
H13 |
1.100 |
1.091 |
| C06 |
H14 |
1.100 |
1.090 |
| C05 |
H15 |
1.100 |
1.090 |
| C05 |
H16 |
1.100 |
1.090 |
| C |
OXT |
1.338 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for XYC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
C04 |
C05 |
105.2 |
104.2 |
| C08 |
C04 |
H8 |
110.0 |
110.6 |
| C08 |
C07 |
C06 |
105.8 |
104.2 |
| C07 |
C08 |
H9 |
110.1 |
110.8 |
| C07 |
C08 |
H10 |
110.1 |
110.7 |
| C08 |
C07 |
H11 |
110.4 |
110.5 |
| C08 |
C07 |
H12 |
110.4 |
110.5 |
| N |
CA |
HA |
109.9 |
109.4 |
| C04 |
CB |
H6 |
108.2 |
109.5 |
| C04 |
CB |
H7 |
108.2 |
109.5 |
| C04 |
C05 |
C06 |
103.5 |
106.6 |
| C05 |
C04 |
H8 |
110.1 |
110.5 |
| C04 |
C05 |
H15 |
111.0 |
110.0 |
| C04 |
C05 |
H16 |
111.0 |
110.0 |
| CB |
CA |
HA |
109.2 |
109.5 |
| C06 |
C07 |
H11 |
110.4 |
110.5 |
| C06 |
C07 |
H12 |
110.4 |
110.5 |
| C07 |
C06 |
H13 |
110.1 |
110.0 |
| C07 |
C06 |
H14 |
110.1 |
110.0 |
| O |
C |
OXT |
122.1 |
120.0 |
| CA |
C |
OXT |
118.7 |
120.0 |
| C05 |
C06 |
H13 |
110.1 |
110.0 |
| C05 |
C06 |
H14 |
110.1 |
110.1 |
| H |
N |
H2 |
109.4 |
110.9 |
| H6 |
CB |
H7 |
109.5 |
109.5 |
| H9 |
C08 |
H10 |
109.5 |
110.8 |
| H11 |
C07 |
H12 |
109.4 |
110.6 |
| H13 |
C06 |
H14 |
109.5 |
110.0 |
| H15 |
C05 |
H16 |
109.4 |
110.1 |
| C |
OXT |
HXT |
109.5 |
117.1 |
Torsion Angles for XYC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
C04 |
CB |
H6 |
294.6 |
310.5 |
| C08 |
C04 |
CB |
H7 |
53.1 |
190.5 |
| C08 |
C04 |
C05 |
C06 |
33.4 |
336.4 |
| C05 |
C04 |
C08 |
H8 |
118.6 |
118.8 |
| C08 |
C04 |
C05 |
H15 |
152.4 |
95.6 |
| C08 |
C04 |
C05 |
H16 |
274.4 |
217.1 |
| C07 |
C08 |
C04 |
C05 |
337.0 |
37.9 |
| C07 |
C08 |
C04 |
H8 |
218.4 |
279.2 |
| C06 |
C07 |
C08 |
H11 |
240.5 |
241.4 |
| C06 |
C07 |
C08 |
H12 |
119.4 |
118.7 |
| C08 |
C07 |
C06 |
H13 |
137.3 |
142.9 |
| C08 |
C07 |
C06 |
H14 |
258.0 |
264.3 |
| H9 |
C08 |
C07 |
H10 |
120.8 |
123.3 |
| H11 |
C07 |
C08 |
H12 |
238.9 |
237.3 |
| CB |
CA |
N |
HA |
121.5 |
120.0 |
| N |
CA |
C |
OXT |
164.3 |
160.3 |
| C04 |
CB |
CA |
HA |
56.5 |
306.0 |
| H6 |
CB |
C04 |
H7 |
241.4 |
120.0 |
| C08 |
C04 |
C05 |
H8 |
241.5 |
241.1 |
| C05 |
C04 |
CB |
H6 |
50.8 |
65.3 |
| C05 |
C04 |
CB |
H7 |
169.3 |
305.2 |
| C04 |
C05 |
C06 |
H13 |
208.7 |
240.8 |
| C04 |
C05 |
C06 |
H14 |
87.9 |
119.3 |
| H15 |
C05 |
C04 |
H16 |
238.1 |
238.5 |
| N |
CA |
CB |
HA |
238.1 |
240.0 |
| CB |
CA |
C |
OXT |
285.8 |
280.3 |
| C06 |
C07 |
C08 |
H9 |
243.9 |
203.8 |
| C06 |
C07 |
C08 |
H10 |
123.1 |
80.4 |
| C08 |
C07 |
C06 |
H11 |
119.4 |
118.6 |
| C08 |
C07 |
C06 |
H12 |
240.6 |
241.3 |
| C04 |
C05 |
C06 |
C07 |
328.3 |
360.0 |
| C05 |
C06 |
C07 |
H13 |
240.4 |
240.7 |
| C05 |
C06 |
C07 |
H14 |
119.6 |
119.4 |
| H11 |
C07 |
C06 |
H12 |
121.1 |
122.7 |
| H13 |
C06 |
C07 |
H14 |
239.2 |
238.6 |
| CA |
C |
O |
OXT |
179.2 |
180.3 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| O |
C |
CA |
OXT |
180.8 |
179.7 |
| CA |
C |
OXT |
HXT |
180.9 |
179.7 |
| C06 |
C05 |
C04 |
H8 |
151.9 |
95.2 |
| C04 |
C05 |
C06 |
H15 |
119.1 |
119.3 |
| C04 |
C05 |
C06 |
H16 |
241.0 |
240.7 |
| C05 |
C06 |
C07 |
H11 |
258.2 |
265.0 |
| C05 |
C06 |
C07 |
H12 |
137.1 |
142.3 |
| C07 |
C06 |
C05 |
H13 |
119.6 |
119.2 |
| C07 |
C06 |
C05 |
H14 |
240.4 |
240.7 |
| H13 |
C06 |
C05 |
H14 |
120.8 |
121.4 |
| HA |
CA |
C |
OXT |
42.9 |
40.3 |
| H |
N |
CA |
HA |
58.5 |
175.2 |
| H2 |
N |
CA |
HA |
178.5 |
299.1 |
| C04 |
CB |
H6 |
H7 |
117.7 |
239.9 |
| H6 |
CB |
CA |
HA |
295.8 |
66.0 |
| C04 |
CB |
H7 |
H6 |
242.3 |
120.1 |
| H7 |
CB |
CA |
HA |
177.2 |
186.0 |
| C08 |
C04 |
H8 |
C05 |
115.5 |
114.9 |
| H8 |
C04 |
CB |
H6 |
173.0 |
187.8 |
| H8 |
C04 |
CB |
H7 |
291.6 |
67.8 |
| H8 |
C04 |
C05 |
C06 |
151.9 |
95.2 |
| H8 |
C04 |
C05 |
H15 |
270.9 |
214.5 |
| H8 |
C04 |
C05 |
H16 |
32.8 |
336.0 |
| H9 |
C08 |
C04 |
C05 |
96.6 |
156.3 |
| H9 |
C08 |
C04 |
H8 |
338.0 |
37.5 |
| H9 |
C08 |
C07 |
C06 |
243.9 |
203.8 |
| C07 |
C08 |
H9 |
H10 |
238.9 |
236.7 |
| H9 |
C08 |
C07 |
H11 |
3.3 |
322.4 |
| H9 |
C08 |
C07 |
H12 |
124.4 |
85.1 |
| H10 |
C08 |
C04 |
C05 |
217.3 |
279.6 |
| H10 |
C08 |
C04 |
H8 |
98.8 |
160.9 |
| H10 |
C08 |
C07 |
C06 |
123.1 |
80.4 |
| C07 |
C08 |
H10 |
H9 |
121.1 |
123.3 |
| H10 |
C08 |
C07 |
H11 |
242.6 |
199.0 |
| H10 |
C08 |
C07 |
H12 |
3.6 |
321.7 |
| C08 |
C07 |
H11 |
C06 |
243.3 |
245.3 |
| H11 |
C07 |
C08 |
H9 |
3.3 |
322.4 |
| H11 |
C07 |
C08 |
H10 |
242.6 |
199.0 |
| C08 |
C07 |
H11 |
H12 |
121.6 |
122.6 |
| C06 |
C07 |
H11 |
H12 |
238.3 |
237.4 |
| H11 |
C07 |
C06 |
H13 |
17.8 |
24.2 |
| H11 |
C07 |
C06 |
H14 |
138.6 |
145.6 |
| C08 |
C07 |
H12 |
C06 |
116.7 |
114.8 |
| H12 |
C07 |
C08 |
H9 |
124.4 |
85.1 |
| H12 |
C07 |
C08 |
H10 |
3.6 |
321.7 |
| C08 |
C07 |
H12 |
H11 |
238.4 |
237.4 |
| C06 |
C07 |
H12 |
H11 |
121.7 |
122.6 |
| H12 |
C07 |
C06 |
H13 |
256.7 |
261.6 |
| H12 |
C07 |
C06 |
H14 |
17.4 |
22.9 |
| H13 |
C06 |
C07 |
H11 |
17.8 |
24.2 |
| H13 |
C06 |
C07 |
H12 |
256.7 |
261.6 |
| C07 |
C06 |
H13 |
H14 |
121.1 |
121.4 |
| C05 |
C06 |
H13 |
H14 |
238.8 |
238.5 |
| H14 |
C06 |
C07 |
H11 |
138.6 |
145.6 |
| H14 |
C06 |
C07 |
H12 |
17.4 |
22.9 |
| C07 |
C06 |
H14 |
H13 |
238.9 |
238.6 |
| C05 |
C06 |
H14 |
H13 |
121.2 |
121.4 |
| C04 |
C05 |
H15 |
C06 |
245.5 |
242.9 |
| H15 |
C05 |
C04 |
H8 |
270.9 |
214.5 |
| C04 |
C05 |
H15 |
H16 |
122.8 |
121.4 |
| H15 |
C05 |
C06 |
H13 |
89.6 |
121.5 |
| H15 |
C05 |
C06 |
H14 |
328.8 |
0.0 |
| C04 |
C05 |
H16 |
C06 |
114.4 |
117.2 |
| H16 |
C05 |
C04 |
H8 |
32.8 |
336.0 |
| C04 |
C05 |
H16 |
H15 |
237.2 |
238.6 |
| H16 |
C05 |
C06 |
H13 |
327.7 |
0.0 |
| H16 |
C05 |
C06 |
H14 |
207.0 |
238.6 |