PDB Chemical Component XYA

Ideal Model

Chemical Description

Name 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL
Synonyms 9-BETA-D-XYLOFURANOSYL-ADENINE
Formula C10 H13 N5 O4
Formal charge 0
Molecular weight 267.241 g/mol
Component type NON-POLYMER

Chemical features

Atom count 32
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Bond count 34
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 9-beta-D-xylofuranosyl-9H-purin-6-amine
Systematic name (OpenEye OEToolkits) (2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@H](O)[C@H]3O
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]([C@H](O3)CO)O)O)N
InChI descriptor InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6+,7-,10-/m1/s1
InChIKey descriptor OIRDTQYFTABQOQ-GAWUUDPSSA-N

Status Information

Last modified 2021-03-01
Created 2003-06-23
Release status REL
Model PDB code 1PR6
Processing site RCSB