PDB Chemical Component XY1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XY1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	O	1.220	1.214
C	C26	1.514	1.477
C	OXT	1.700	1.347
C26	C25	1.391	1.398
C26	C27	1.401	1.397
C25	C24	1.388	1.372
C24	C23	1.386	1.399
C27	C28	1.404	1.371
C28	C23	1.394	1.399
C23	N21	1.356	1.366
N21	N20	1.301	1.291
N20	C18	1.356	1.363
C18	C17	1.383	1.404
C18	C19	1.384	1.399
C17	O22	1.365	1.357
C17	C16	1.393	1.385
C16	C15	1.390	1.382
C15	C9	1.386	1.385
C19	C9	1.382	1.378
C9	C14	1.512	1.508
C14	C12	1.524	1.530
C12	N	1.457	1.468
OXT	HXT	0.950	0.967
C25	H25	1.080	1.079
C27	H27	1.080	1.080
C24	H24	1.080	1.080
C28	H28	1.080	1.079
C19	H19	1.080	1.080
O22	H22	0.950	0.968
C16	H16	1.080	1.080
C15	H15	1.080	1.080
C14	H141	1.100	1.089
C14	H142	1.100	1.090
C12	H121	1.100	1.090
C12	H122	1.100	1.090
N	H	0.999	1.010
N	H2	1.000	1.009

Bond Angles for XY1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O	C	C26	119.9	120.0
O	C	OXT	92.1	120.0
C26	C	OXT	118.3	120.0
C	C26	C25	117.1	120.0
C	C26	C27	123.9	120.0
C	OXT	HXT	109.5	117.0
C25	C26	C27	119.0	120.0
C26	C25	C24	120.5	120.0
C26	C25	H25	119.7	120.0
C26	C27	C28	120.4	120.0
C26	C27	H27	119.8	120.0
C25	C24	C23	120.8	120.0
C24	C25	H25	119.7	120.1
C25	C24	H24	119.6	119.9
C24	C23	C28	119.6	120.0
C24	C23	N21	115.8	120.0
C23	C24	H24	119.6	120.0
C27	C28	C23	119.7	120.0
C28	C27	H27	119.8	120.0
C27	C28	H28	120.2	120.1
C28	C23	N21	124.6	120.1
C23	C28	H28	120.1	120.0
C23	N21	N20	111.5	120.0
N21	N20	C18	128.1	120.1
N20	C18	C17	123.6	120.2
N20	C18	C19	116.3	120.1
C17	C18	C19	120.1	119.6
C18	C17	O22	120.7	120.2
C18	C17	C16	119.3	119.7
C18	C19	C9	120.7	119.8
C18	C19	H19	119.7	120.1
O22	C17	C16	120.0	120.1
C17	O22	H22	109.5	114.1
C17	C16	C15	120.6	120.1
C17	C16	H16	119.7	120.0
C16	C15	C9	119.5	120.4
C15	C16	H16	119.7	119.9
C16	C15	H15	120.3	119.8
C15	C9	C19	119.9	120.4
C15	C9	C14	121.3	119.8
C9	C15	H15	120.2	119.8
C19	C9	C14	118.8	119.8
C9	C19	H19	119.7	120.0
C9	C14	C12	114.5	109.5
C9	C14	H141	108.2	109.4
C9	C14	H142	108.2	109.5
C14	C12	N	101.8	109.5
C12	C14	H141	108.2	109.5
C12	C14	H142	108.2	109.4
C14	C12	H121	111.4	109.5
C14	C12	H122	111.3	109.5
N	C12	H121	111.4	109.5
N	C12	H122	111.4	109.5
C12	N	H	109.5	111.0
C12	N	H2	109.5	111.0
H141	C14	H142	109.4	109.5
H121	C12	H122	109.5	109.4
H	N	H2	109.4	111.0

Torsion Angles for XY1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C26	C	O	OXT	235.4	180.3
O	C	C26	C25	202.3	0.0
O	C	C26	C27	22.2	179.7
O	C	OXT	HXT	0.0	0.0
O	C	C26	OXT	110.9	179.7
C26	C	OXT	HXT	125.8	179.8
C25	C26	C	C27	180.1	180.3
C	C26	C25	C24	180.4	180.0
C	C26	C25	H25	0.4	359.9
C	C26	C27	C28	179.5	180.0
C	C26	C27	H27	359.5	0.1
O	C	OXT	C26	234.2	180.3
OXT	C	C26	C25	91.4	180.3
OXT	C	C26	C27	271.4	360.0
C25	C26	C	OXT	91.4	180.3
C	C26	C25	C27	179.9	179.7
C25	C26	C27	C28	359.4	359.7
C25	C26	C27	H27	179.4	179.8
C26	C25	C24	C23	359.6	360.0
C24	C25	C26	H25	180.0	180.1
C26	C25	C24	H24	179.6	179.9
C27	C26	C	OXT	271.4	360.0
C	C26	C27	C25	180.1	180.3
C27	C26	C25	C24	0.5	0.3
C27	C26	C25	H25	180.5	180.2
C26	C27	C28	C23	0.5	0.0
C28	C27	C26	H27	180.0	179.9
C26	C27	C28	H28	180.5	180.0
C24	C25	C26	C27	0.5	0.3
C26	C25	C24	H25	180.0	179.9
C25	C24	C23	C28	0.3	359.7
C25	C24	C23	N21	179.8	180.0
C23	C24	C25	H24	180.0	180.0
C23	C24	C25	H25	179.6	180.0
C25	C24	C23	H24	180.0	180.0
C27	C28	C23	C24	359.6	0.3
C28	C23	C24	N21	180.5	179.7
C24	C23	C28	H28	179.6	180.2
C24	C23	N21	N20	0.4	180.0
C26	C27	C28	H27	180.0	180.1
C24	C23	C28	C27	359.6	0.3
C27	C28	C23	N21	180.2	180.0
C23	C28	C27	H28	180.0	180.0
C24	C23	C28	N21	179.4	180.3
C28	C23	C24	H24	180.3	179.8
C23	C28	C27	H27	180.5	180.0
C27	C28	C23	H28	180.0	180.0
C28	C23	N21	N20	179.8	0.3
C24	C23	N21	C28	180.6	179.7
N21	C23	C24	H24	359.8	0.0
N21	C23	C28	H28	0.2	360.0
C23	N21	N20	C18	180.4	180.0
N21	N20	C18	C17	359.2	180.0
N21	N20	C18	C19	179.5	359.7
C17	C18	N20	C19	179.6	180.2
N20	C18	C17	O22	0.6	0.1
N20	C18	C17	C16	180.5	180.0
N20	C18	C19	C9	179.9	179.7
N20	C18	C19	H19	359.9	360.0
N20	C18	C17	C19	180.4	179.8
C17	C18	C19	C9	0.3	359.5
C17	C18	C19	H19	180.3	179.8
O22	C17	C18	C16	180.1	180.1
C18	C17	O22	H22	180.0	89.9
C18	C17	C16	C15	359.8	0.1
C18	C17	C16	H16	179.8	180.0
N20	C18	C19	C17	179.7	180.2
C19	C18	C17	O22	180.3	180.3
C19	C18	C17	C16	0.2	0.2
C15	C9	C19	C18	359.3	0.6
C18	C19	C9	C14	181.1	180.3
C9	C19	C18	H19	180.0	179.7
O22	C17	C18	C19	180.3	180.3
C18	C17	O22	C16	179.9	179.9
O22	C17	C16	C15	179.7	179.9
O22	C17	C16	H16	359.7	359.9
C16	C17	C18	C19	0.2	0.2
C18	C17	C16	O22	180.1	180.1
C16	C17	O22	H22	0.1	270.1
C17	C16	C15	C9	359.7	0.0
C15	C16	C17	H16	180.0	180.1
C17	C16	C15	H15	179.7	179.9
C17	C16	C15	H16	180.0	179.9
C16	C15	C9	C19	0.7	359.7
C16	C15	C9	C14	178.8	180.0
C9	C15	C16	H15	180.0	180.1
C18	C19	C9	C15	359.3	0.6
C9	C15	C16	H16	179.7	180.1
C16	C15	C9	H15	180.0	179.9
C19	C9	C15	C14	181.9	179.7
C15	C9	C19	H19	179.3	180.3
C15	C9	C14	C12	76.7	90.0
C15	C9	C14	H141	197.5	210.0
C15	C9	C14	H142	315.9	330.0
C18	C19	C9	H19	180.0	180.3
C15	C9	C19	C14	178.1	180.3
C19	C9	C15	H15	180.7	179.8
C19	C9	C14	C12	254.8	270.2
C19	C9	C14	H141	15.6	30.3
C19	C9	C14	H142	134.1	150.3
C15	C9	C14	C19	181.9	179.7
C14	C9	C15	H15	358.8	0.0
C14	C9	C19	H19	1.1	0.0
C9	C14	C12	N	166.4	180.0
C12	C14	C9	H141	239.2	240.0
C12	C14	C9	H142	120.8	119.9
C9	C14	C12	H121	285.2	300.1
C9	C14	C12	H122	47.7	60.0
H141	C14	C9	H142	241.5	240.0
C9	C14	C12	H141	120.8	120.0
C9	C14	C12	H142	239.2	240.0
N	C12	C14	H121	241.2	239.9
N	C12	C14	H122	118.8	120.0
C14	C12	N	H	180.0	56.0
C14	C12	N	H2	300.0	180.0
H141	C14	C12	H142	118.5	120.1
H121	C12	C14	H122	237.5	240.1
N	C12	C14	H141	45.7	60.0
N	C12	C14	H142	287.2	300.0
C14	C12	N	H121	118.8	120.1
C14	C12	N	H122	241.3	240.0
H121	C12	N	H122	122.5	119.9
H	N	C12	H2	240.0	236.0
H25	C25	C26	C27	180.5	180.2
C26	C25	H25	C24	180.0	180.1
H25	C25	C24	C23	179.6	180.0
H25	C25	C24	H24	359.6	0.0
C26	C27	H27	C28	180.0	179.9
H27	C27	C28	C23	180.5	180.0
H27	C27	C28	H28	0.6	360.0
C25	C24	H24	C23	180.0	180.0
H24	C24	C25	H25	359.6	0.0
H24	C24	C23	C28	180.3	179.8
H24	C24	C23	N21	359.8	0.0
C27	C28	H28	C23	180.0	180.0
H28	C28	C27	H27	0.6	360.0
H28	C28	C23	N21	0.2	360.0
C18	C19	H19	C9	180.0	179.7
H19	C19	C9	C14	1.1	0.0
H22	O22	C17	C16	0.1	270.1
C17	C16	H16	C15	180.0	180.1
H16	C16	C15	C9	179.7	180.1
H16	C16	C15	H15	359.7	0.0
C16	C15	H15	C9	180.0	180.1
H15	C15	C16	H16	359.7	0.0
H15	C15	C9	C19	180.7	179.8
H15	C15	C9	C14	358.8	0.0
C9	C14	H141	C12	235.4	240.0
C9	C14	H141	H142	117.7	120.0
H141	C14	C12	N	45.7	60.0
C12	C14	H141	H142	242.3	240.0
H141	C14	C12	H121	164.4	180.1
H141	C14	C12	H122	286.9	300.0
C9	C14	H142	C12	124.6	120.0
C9	C14	H142	H141	242.3	240.0
H142	C14	C12	N	287.2	300.0
C12	C14	H142	H141	117.7	120.1
H142	C14	C12	H121	46.0	60.0
H142	C14	C12	H122	168.4	180.0
C14	C12	H121	N	247.1	239.9
H121	C12	C14	H141	164.4	180.1
H121	C12	C14	H142	46.0	60.0
C14	C12	H121	H122	123.6	120.0
N	C12	H121	H122	236.4	240.0
H121	C12	N	H	61.2	296.0
H121	C12	N	H2	181.2	60.0
C14	C12	H122	N	112.8	120.0
H122	C12	C14	H141	286.9	300.0
H122	C12	C14	H142	168.4	180.0
C14	C12	H122	H121	236.4	240.0
N	C12	H122	H121	123.6	120.0
H122	C12	N	H	298.7	176.1
H122	C12	N	H2	58.8	300.0
H	N	C12	H121	61.2	296.0
H	N	C12	H122	298.7	176.1
C12	N	H	H2	120.0	124.0
H2	N	C12	H121	181.2	60.0
H2	N	C12	H122	58.8	300.0
C12	N	H2	H	239.9	236.0