PDB Chemical Component XXZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XXZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
F1	C2	1.323	1.351
C2	C3	1.389	1.384
C2	C7	1.405	1.393
C3	C4	1.380	1.384
C3	H3	1.080	1.080
C4	C1	1.386	1.383
C4	H4	1.080	1.081
C1	C6	1.393	1.382
C1	H1	1.080	1.080
C6	C7	1.418	1.406
C6	N1	1.551	1.393
C7	CG	1.522	1.476
CG	N20	1.365	1.303
CG	N21	1.316	1.378
N20	C5	1.462	1.462
N21	H211	1.000	0.970
N21	H212	1.000	0.971
N1	C5	1.407	1.469
N1	HN1	1.000	0.970
C5	C10	1.503	1.532
C5	C14	1.558	1.532
C10	C11	1.538	1.532
C10	H101	1.100	1.089
C10	H102	1.100	1.089
C11	N12	1.492	1.470
C11	H111	1.100	1.090
C11	H112	1.100	1.090
N12	C13	1.459	1.469
N12	C15	1.394	1.347
C13	C14	1.554	1.527
C13	H131	1.100	1.090
C13	H132	1.100	1.090
C14	H141	1.100	1.091
C14	H142	1.100	1.089
C15	O16	1.231	1.216
C15	CZ	1.471	1.479
C18	CD2	1.405	1.379
C18	CZ	1.402	1.397
C18	H18	1.080	1.080
NH	CB	1.467	1.469
NH	HNH1	1.000	1.009
NH	HNH2	0.999	1.009
CB	C8	1.511	1.507
CB	HB1	1.100	1.090
CB	HB2	1.100	1.090
C8	CD1	1.413	1.384
C8	CD2	1.415	1.383
CD1	CE1	1.409	1.380
CD1	HD1	1.081	1.080
CE1	CZ	1.427	1.395
CE1	HE1	1.080	1.080
CD2	HD2	1.080	1.081

Bond Angles for XXZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F1	C2	C3	119.1	120.3
F1	C2	C7	119.2	120.3
C3	C2	C7	121.7	119.4
C2	C3	C4	120.4	120.5
C2	C3	H3	119.8	119.8
C2	C7	C6	116.7	119.8
C2	C7	CG	126.8	122.0
C4	C3	H3	119.8	119.7
C3	C4	C1	119.6	120.5
C3	C4	H4	120.2	119.7
C1	C4	H4	120.2	119.7
C4	C1	C6	120.4	119.7
C4	C1	H1	119.8	120.2
C6	C1	H1	119.8	120.1
C1	C6	C7	121.1	120.0
C1	C6	N1	121.8	122.3
C7	C6	N1	117.1	117.6
C6	C7	CG	114.4	118.3
C6	N1	C5	116.8	118.1
C6	N1	HN1	107.1	121.0
C7	CG	N20	118.0	119.7
C7	CG	N21	123.5	120.1
N20	CG	N21	118.4	120.2
CG	N20	C5	123.0	122.1
CG	N21	H211	126.2	120.1
CG	N21	H212	107.5	120.0
N20	C5	N1	108.6	110.4
N20	C5	C10	116.2	109.5
N20	C5	C14	110.3	109.5
H211	N21	H212	126.3	120.0
C5	N1	HN1	107.1	120.9
N1	C5	C10	102.4	109.0
N1	C5	C14	112.5	109.1
C10	C5	C14	106.8	109.3
C5	C10	C11	110.1	109.3
C5	C10	H101	109.1	109.5
C5	C10	H102	109.3	109.5
C5	C14	C13	108.9	109.3
C5	C14	H141	109.8	109.4
C5	C14	H142	109.7	109.5
C11	C10	H101	109.1	109.5
C11	C10	H102	109.3	109.5
C10	C11	N12	110.3	108.8
C10	C11	H111	109.0	109.6
C10	C11	H112	109.2	109.6
H101	C10	H102	110.0	109.5
N12	C11	H111	109.1	109.6
N12	C11	H112	109.2	109.6
C11	N12	C13	113.4	118.7
C11	N12	C15	127.1	120.6
H111	C11	H112	110.1	109.7
C13	N12	C15	119.5	120.7
N12	C13	C14	107.0	109.1
N12	C13	H131	110.9	109.6
N12	C13	H132	110.3	109.3
N12	C15	O16	120.8	120.1
N12	C15	CZ	119.4	120.0
C14	C13	H131	110.9	109.6
C14	C13	H132	110.3	109.6
C13	C14	H141	109.8	109.6
C13	C14	H142	109.7	109.4
H131	C13	H132	107.5	109.7
H141	C14	H142	109.0	109.5
O16	C15	CZ	119.9	119.9
C15	CZ	C18	120.0	120.1
C15	CZ	CE1	118.2	120.2
CD2	C18	CZ	118.7	119.8
CD2	C18	H18	120.6	120.1
C18	CD2	C8	119.8	120.2
C18	CD2	HD2	120.1	119.9
CZ	C18	H18	120.7	120.1
C18	CZ	CE1	121.8	119.7
CB	NH	HNH1	109.5	106.7
CB	NH	HNH2	109.5	106.7
NH	CB	C8	112.9	109.4
NH	CB	HB1	107.6	109.5
NH	CB	HB2	108.3	109.5
HNH1	NH	HNH2	109.4	106.7
C8	CB	HB1	107.6	109.5
C8	CB	HB2	108.4	109.5
CB	C8	CD1	119.4	119.8
CB	C8	CD2	118.7	119.9
HB1	CB	HB2	112.2	109.5
CD1	C8	CD2	121.8	120.3
C8	CD1	CE1	118.3	120.1
C8	CD1	HD1	120.8	119.9
C8	CD2	HD2	120.1	119.9
CE1	CD1	HD1	120.8	119.9
CD1	CE1	CZ	119.5	119.9
CD1	CE1	HE1	120.3	120.0
CZ	CE1	HE1	120.2	120.1

Torsion Angles for XXZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	F1	C7	180.9	180.0
F1	C2	C3	C4	179.4	180.1
F1	C2	C3	H3	359.4	0.0
F1	C2	C7	C6	180.9	180.1
F1	C2	C7	CG	18.3	0.5
F1	C2	C3	C7	179.1	180.0
C3	C2	C7	C6	360.0	0.1
C3	C2	C7	CG	197.4	180.5
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	C1	359.8	359.9
C2	C3	C4	H4	179.8	179.9
F1	C2	C7	C3	180.9	180.0
C7	C2	C3	C4	0.4	0.1
C7	C2	C3	H3	180.3	180.0
C1	C6	C7	C2	359.6	359.8
C2	C7	C6	N1	179.4	179.8
C6	C7	C2	CG	162.6	179.6
C2	C7	CG	N20	191.5	194.7
C2	C7	CG	N21	7.2	14.8
C4	C3	C2	C7	0.4	0.1
C2	C3	C4	H3	180.0	179.9
C1	C4	C3	H4	180.0	180.0
C3	C4	C1	C6	359.8	0.0
C3	C4	C1	H1	179.7	180.0
H3	C3	C2	C7	180.3	180.0
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C1	179.8	179.9
H3	C3	C4	H4	359.8	360.0
C1	C4	C3	H3	179.8	179.9
C3	C4	C1	H4	180.0	180.0
C6	C1	C4	H1	180.0	180.0
C4	C1	C6	C7	0.6	0.1
C4	C1	C6	N1	180.8	180.1
H4	C4	C3	H3	359.8	360.0
C3	C4	H4	C1	180.0	180.0
H4	C4	C1	C6	179.8	180.0
H4	C4	C1	H1	359.7	360.0
C2	C7	C6	C1	359.6	359.8
C6	C1	C4	H4	179.8	180.0
C4	C1	C6	H1	180.0	180.0
C7	C6	C1	N1	179.8	180.0
C1	C6	C7	CG	164.3	179.5
C1	C6	N1	C5	155.5	150.5
C1	C6	N1	HN1	275.5	330.5
H1	C1	C4	H4	359.7	360.0
C4	C1	H1	C6	180.0	180.0
H1	C1	C6	C7	180.6	180.1
H1	C1	C6	N1	0.8	0.2
C2	C7	C6	CG	195.2	180.4
C7	C6	C1	H1	180.6	180.1
C1	C6	C7	N1	180.2	180.0
C7	C6	N1	C5	335.7	330.6
C7	C6	N1	HN1	95.7	150.5
C6	C7	CG	N20	28.5	15.0
C6	C7	CG	N21	204.2	195.2
N1	C6	C1	H1	0.8	0.2
C1	C6	N1	C7	179.8	180.0
N1	C6	C7	CG	344.1	359.4
N20	C5	N1	C6	49.3	43.3
C5	N1	C6	HN1	240.0	180.0
C6	N1	C5	C10	172.7	163.6
C6	N1	C5	C14	287.0	283.0
C2	C7	CG	C6	162.9	179.6
CG	C7	C6	N1	344.1	359.4
N20	CG	C7	N21	184.3	179.9
C7	CG	N20	C5	359.1	1.6
C7	CG	N21	H211	182.4	359.9
C7	CG	N21	H212	2.4	180.0
C7	CG	N20	N21	175.9	180.1
N20	CG	N21	H211	358.1	180.1
N20	CG	N21	H212	178.0	0.2
CG	N20	C5	N1	321.9	330.8
CG	N20	C5	C10	207.3	210.7
CG	N20	C5	C14	85.6	90.9
C7	CG	N21	N20	184.3	179.9
N21	CG	N20	C5	183.2	181.5
H211	N21	CG	H212	180.0	179.9
C6	N1	C5	N20	49.3	43.3
C5	N20	CG	N21	183.2	181.5
N20	C5	N1	HN1	289.3	223.4
N1	C5	N20	C10	114.7	120.0
N1	C5	N20	C14	236.4	239.9
C10	C5	N20	C14	121.7	119.8
N20	C5	C10	C11	296.5	178.5
N20	C5	C10	H101	176.7	58.5
N20	C5	C10	H102	56.5	298.4
N20	C5	C14	C13	63.5	181.3
N20	C5	C14	H141	303.2	301.4
N20	C5	C14	H142	183.5	61.5
CG	N21	H211	H212	179.9	180.1
CG	N21	H212	H211	180.0	179.9
C6	N1	C5	HN1	120.0	180.0
N20	C5	N1	C10	236.6	239.7
N20	C5	N1	C14	122.3	120.4
C10	C5	N1	C14	245.7	240.6
N1	C5	C10	C11	178.4	57.7
N1	C5	C10	H101	58.6	297.7
N1	C5	C10	H102	298.4	177.6
N1	C5	C14	C13	184.8	302.3
N1	C5	C14	H141	64.5	62.3
N1	C5	C14	H142	304.8	182.4
C6	N1	HN1	C5	234.0	180.0
HN1	N1	C5	C10	52.7	343.7
HN1	N1	C5	C14	167.0	103.0
N20	C5	C10	N1	118.1	120.9
N20	C5	C10	C14	236.5	240.1
C10	C5	N1	HN1	52.7	343.7
N1	C5	C10	C14	118.4	119.2
C10	C5	C14	C13	296.4	61.4
C10	C5	C14	H141	176.1	181.4
C10	C5	C14	H142	56.4	301.5
C11	C10	C5	H101	119.7	120.0
C11	C10	C5	H102	240.0	240.1
C5	C10	C11	N12	303.3	54.7
C5	C10	C11	H111	183.6	295.0
C5	C10	C11	H112	63.3	174.5
H101	C10	C5	H102	120.2	120.1
N20	C5	C14	N1	238.7	239.1
N20	C5	C14	C10	127.1	119.9
C14	C5	N1	HN1	167.0	103.0
N1	C5	C14	C10	248.4	240.8
C14	C5	C10	C11	60.0	298.5
C14	C5	C10	H101	300.2	178.5
C14	C5	C10	H102	180.0	58.4
N12	C13	C14	C5	62.6	305.4
C5	C14	C13	H131	183.5	185.4
C5	C14	C13	H132	302.5	65.0
C13	C14	C5	H141	120.2	240.0
C13	C14	C5	H142	240.0	119.9
H141	C14	C5	H142	119.8	239.9
C11	C10	C5	C14	60.0	298.5
C5	C10	C11	H101	240.2	240.0
C5	C10	C11	H102	120.0	119.9
H101	C10	C11	H102	239.7	239.9
N12	C11	C10	H111	119.7	119.7
N12	C11	C10	H112	240.0	240.2
C10	C11	N12	C13	57.5	306.7
C10	C11	N12	C15	237.2	126.5
H111	C11	C10	H112	120.3	120.4
H101	C10	C5	C14	300.2	178.5
C5	C10	H101	C11	120.3	119.8
C5	C10	H101	H102	240.2	239.9
C11	C10	H101	H102	119.8	120.1
H101	C10	C11	N12	63.0	174.7
H101	C10	C11	H111	303.3	55.0
H101	C10	C11	H112	183.0	294.5
H102	C10	C5	C14	180.0	58.4
C5	C10	H102	C11	239.5	240.2
C5	C10	H102	H101	119.8	120.1
C11	C10	H102	H101	240.2	239.9
H102	C10	C11	N12	183.3	294.8
H102	C10	C11	H111	63.6	175.1
H102	C10	C11	H112	303.3	54.6
N12	C11	C10	H101	63.0	174.7
N12	C11	C10	H102	183.3	294.8
C10	C11	N12	H111	240.3	240.3
C10	C11	N12	H112	120.0	119.8
H111	C11	N12	H112	239.7	239.6
C13	N12	C11	C15	180.3	180.3
C11	N12	C13	C14	300.1	53.3
C11	N12	C13	H131	179.1	173.2
C11	N12	C13	H132	60.1	293.4
C11	N12	C15	O16	181.6	353.6
C11	N12	C15	CZ	2.1	173.6
H111	C11	C10	H101	303.3	55.0
H111	C11	C10	H102	63.6	175.1
C10	C11	H111	N12	120.4	119.2
C10	C11	H111	H112	240.2	239.6
N12	C11	H111	H112	119.8	120.4
H111	C11	N12	C13	177.2	66.5
H111	C11	N12	C15	356.8	246.2
H112	C11	C10	H101	183.0	294.5
H112	C11	C10	H102	303.3	54.6
C10	C11	H112	N12	239.4	240.7
C10	C11	H112	H111	119.7	120.4
N12	C11	H112	H111	240.3	239.7
H112	C11	N12	C13	297.5	186.9
H112	C11	N12	C15	117.2	6.6
C5	C14	C13	N12	62.6	305.4
C13	N12	C11	H111	177.2	66.5
C13	N12	C11	H112	297.5	186.9
C11	N12	C13	C15	179.7	179.7
C13	N12	C15	O16	1.2	173.3
C13	N12	C15	CZ	181.7	353.3
C14	C13	N12	H131	121.0	240.0
C14	C13	N12	H132	240.0	119.8
N12	C13	C14	H141	182.8	185.5
N12	C13	C14	H142	302.5	65.4
H131	C13	N12	H132	119.0	239.8
C15	N12	C11	H111	356.8	246.2
C15	N12	C11	H112	117.2	6.6
C11	N12	C15	C13	180.4	180.3
C15	N12	C13	C14	120.4	233.5
C15	N12	C13	H131	359.4	353.5
C15	N12	C13	H132	240.4	113.7
O16	C15	N12	CZ	179.5	180.0
N12	C15	CZ	C18	233.0	314.6
N12	C15	CZ	CE1	54.8	134.6
C5	C14	C13	H141	239.7	119.9
C5	C14	C13	H142	120.0	240.0
C14	C13	N12	C15	120.4	233.5
N12	C13	C14	H131	239.0	120.0
N12	C13	C14	H132	120.0	240.4
H131	C13	C14	H132	241.0	120.4
H141	C14	C13	H142	240.3	120.1
H131	C13	N12	C15	359.4	353.5
N12	C13	H131	C14	118.7	240.4
N12	C13	H131	H132	239.3	120.0
C14	C13	H131	H132	120.7	239.6
H131	C13	C14	H141	303.8	65.5
H131	C13	C14	H142	63.5	305.4
H132	C13	N12	C15	240.4	113.7
N12	C13	H132	C14	242.0	119.5
N12	C13	H132	H131	121.0	239.8
C14	C13	H132	H131	239.0	120.3
H132	C13	C14	H141	62.8	305.1
H132	C13	C14	H142	182.5	185.0
C5	C14	H141	C13	119.7	240.1
C5	C14	H141	H142	239.8	120.1
H141	C14	C13	H131	303.8	65.5
H141	C14	C13	H132	62.8	305.1
C13	C14	H141	H142	120.1	240.0
C5	C14	H142	C13	240.5	119.9
C5	C14	H142	H141	120.3	240.0
H142	C14	C13	H131	63.5	305.4
H142	C14	C13	H132	182.5	185.0
C13	C14	H142	H141	239.8	120.1
N12	C15	O16	CZ	180.5	180.0
O16	C15	CZ	C18	53.5	134.7
O16	C15	CZ	CE1	235.3	314.6
N12	C15	CZ	O16	179.5	180.0
CD2	C18	CZ	C15	181.6	180.0
C15	CZ	C18	H18	1.6	360.0
C18	CZ	C15	CE1	178.2	180.1
CD1	CE1	CZ	C15	178.6	179.8
C15	CZ	CE1	HE1	358.6	0.1
C15	CZ	C18	CD2	181.6	180.0
CZ	C18	CD2	H18	180.0	180.0
CD2	C18	CZ	CE1	359.8	0.0
CB	C8	CD2	C18	179.7	179.9
CD1	C8	CD2	C18	0.1	0.3
C8	CD2	C18	HD2	180.0	180.0
C15	CZ	C18	CE1	181.8	179.9
CD2	C18	CZ	H18	180.0	180.0
CZ	C18	CD2	C8	0.0	360.0
CZ	C18	CD2	HD2	180.0	180.0
CD1	CE1	CZ	C18	0.4	359.7
C18	CZ	CE1	HE1	180.4	180.0
CD2	C18	H18	CZ	180.0	180.0
H18	C18	CD2	C8	180.0	179.9
H18	C18	CD2	HD2	0.0	360.0
H18	C18	CZ	CE1	179.8	180.0
HNH1	NH	CB	HNH2	120.0	246.2
C8	CB	NH	HB1	118.5	240.0
C8	CB	NH	HB2	240.0	120.0
NH	CB	C8	CD1	336.9	269.7
NH	CB	C8	CD2	157.2	90.1
HB1	CB	NH	HB2	121.5	240.0
CB	NH	HNH1	HNH2	240.0	113.7
HNH1	NH	CB	C8	275.2	66.3
HNH1	NH	CB	HB1	156.7	186.2
HNH1	NH	CB	HB2	35.2	306.3
CB	NH	HNH2	HNH1	120.0	246.2
HNH2	NH	CB	C8	155.3	180.0
HNH2	NH	CB	HB1	36.7	300.0
HNH2	NH	CB	HB2	275.2	60.1
C18	CD2	C8	CB	179.7	179.9
C8	CB	NH	HNH1	275.2	66.3
C8	CB	NH	HNH2	155.3	180.0
NH	CB	C8	HB1	241.4	120.0
NH	CB	C8	HB2	120.0	240.0
HB1	CB	C8	HB2	238.5	120.1
CD1	C8	CB	CD2	179.6	179.6
CB	C8	CD1	CE1	180.4	179.8
CB	C8	CD1	HD1	0.4	0.3
CB	C8	CD2	HD2	359.7	359.9
HB1	CB	NH	HNH1	156.7	186.2
HB1	CB	NH	HNH2	36.7	300.0
NH	CB	HB1	C8	121.9	240.1
NH	CB	HB1	HB2	240.9	120.0
C8	CB	HB1	HB2	119.1	239.9
HB1	CB	C8	CD1	95.4	149.7
HB1	CB	C8	CD2	275.8	330.1
HB2	CB	NH	HNH1	35.2	306.3
HB2	CB	NH	HNH2	275.2	60.1
NH	CB	HB2	C8	237.2	119.9
NH	CB	HB2	HB1	118.6	240.0
C8	CB	HB2	HB1	241.4	120.1
HB2	CB	C8	CD1	216.9	29.6
HB2	CB	C8	CD2	37.3	210.0
C18	CD2	C8	CD1	0.1	0.3
CD1	C8	CB	HB1	95.4	149.7
CD1	C8	CB	HB2	216.9	29.6
CB	C8	CD1	CD2	180.4	180.4
CD1	C8	CD2	HD2	180.1	180.3
CE1	CD1	C8	HD1	180.0	179.5
C8	CD1	CE1	CZ	359.8	0.6
C8	CD1	CE1	HE1	179.8	180.3
C8	CD2	C18	CZ	0.0	360.0
C8	CD2	C18	H18	180.0	179.9
C18	CD2	C8	HD2	180.0	180.0
CD2	C8	CB	HB1	275.8	330.1
CD2	C8	CB	HB2	37.3	210.0
CB	C8	CD2	CD1	179.6	179.6
CD2	C8	CD1	CE1	360.0	359.4
CD2	C8	CD1	HD1	180.0	180.0
C15	CZ	CE1	CD1	178.6	179.8
C18	CZ	CE1	CD1	0.4	359.7
CE1	CD1	C8	CD2	360.0	359.4
C8	CD1	CE1	HD1	180.0	180.5
CZ	CE1	CD1	HE1	180.0	180.3
HD1	CD1	C8	CD2	180.0	180.0
C8	CD1	HD1	CE1	180.0	179.5
HD1	CD1	CE1	CZ	179.8	180.0
HD1	CD1	CE1	HE1	359.8	359.7
C15	CZ	CE1	C18	178.2	180.1
CE1	CZ	C18	H18	179.8	180.0
CZ	CE1	CD1	HD1	179.8	180.0
CD1	CE1	CZ	HE1	180.0	179.7
HE1	CE1	CD1	HD1	359.8	359.7
CD1	CE1	HE1	CZ	180.0	180.3
HD2	CD2	C18	CZ	180.0	180.0
HD2	CD2	C18	H18	0.0	360.0
C18	CD2	HD2	C8	180.0	180.0