PDB Chemical Component XT8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XT8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
S1 |
1.781 |
1.841 |
| C5 |
N4 |
1.501 |
1.489 |
| C5 |
C6 |
1.525 |
1.530 |
| S1 |
C2 |
1.776 |
1.837 |
| C10 |
C2 |
1.523 |
1.530 |
| N4 |
C3 |
1.480 |
1.466 |
| O16 |
C15 |
1.221 |
1.212 |
| C6 |
C7 |
1.503 |
1.507 |
| C6 |
N14 |
1.445 |
1.465 |
| C2 |
C3 |
1.552 |
1.541 |
| C2 |
C9 |
1.510 |
1.530 |
| O12 |
C11 |
1.230 |
1.208 |
| C7 |
O8 |
1.222 |
1.208 |
| C3 |
C11 |
1.489 |
1.507 |
| C15 |
N14 |
1.317 |
1.348 |
| C15 |
C17 |
1.537 |
1.506 |
| C11 |
O13 |
1.258 |
1.343 |
| O32 |
C33 |
1.229 |
1.209 |
| C29 |
C30 |
1.404 |
1.334 |
| C29 |
C28 |
1.419 |
1.384 |
| C33 |
O33 |
1.245 |
1.342 |
| C33 |
C17 |
1.489 |
1.507 |
| C17 |
C28 |
1.476 |
1.507 |
| C30 |
S31 |
1.733 |
1.759 |
| C28 |
C32 |
1.387 |
1.334 |
| C32 |
S31 |
1.723 |
1.758 |
| C7 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.100 |
1.090 |
| C5 |
H3 |
1.100 |
1.090 |
| C10 |
H4 |
1.100 |
1.091 |
| C10 |
H5 |
1.100 |
1.090 |
| C10 |
H6 |
1.100 |
1.089 |
| C9 |
H7 |
1.100 |
1.090 |
| C9 |
H8 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
| C3 |
H10 |
1.100 |
1.090 |
| O13 |
H11 |
0.950 |
0.967 |
| N4 |
H12 |
1.000 |
1.009 |
| N14 |
H14 |
1.000 |
0.971 |
| C17 |
H15 |
1.100 |
1.090 |
| O33 |
H16 |
0.950 |
0.967 |
| C32 |
H17 |
1.080 |
1.080 |
| C30 |
H18 |
1.080 |
1.080 |
| C29 |
H19 |
1.080 |
1.081 |
Bond Angles for XT8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S1 |
C5 |
N4 |
107.8 |
100.9 |
| C5 |
S1 |
C2 |
95.7 |
94.9 |
| S1 |
C5 |
H3 |
106.5 |
111.2 |
| C5 |
N4 |
C3 |
107.3 |
110.9 |
| N4 |
C5 |
H3 |
109.7 |
111.2 |
| C5 |
N4 |
H12 |
110.0 |
111.0 |
| C5 |
C6 |
N14 |
114.8 |
109.5 |
| C5 |
C6 |
H2 |
108.1 |
109.5 |
| S1 |
C2 |
C3 |
104.5 |
103.5 |
| S1 |
C2 |
C9 |
112.3 |
110.6 |
| C10 |
C2 |
C3 |
112.0 |
110.6 |
| C10 |
C2 |
C9 |
110.8 |
110.7 |
| N4 |
C3 |
H10 |
108.9 |
108.7 |
| O16 |
C15 |
C17 |
123.2 |
120.0 |
| C6 |
C7 |
H1 |
118.6 |
120.0 |
| N14 |
C6 |
H2 |
109.2 |
109.4 |
| C6 |
N14 |
H14 |
118.6 |
120.0 |
| C9 |
C2 |
C3 |
108.2 |
110.6 |
| C2 |
C3 |
C11 |
111.9 |
108.8 |
| C2 |
C3 |
H10 |
108.0 |
108.8 |
| C2 |
C9 |
H7 |
109.5 |
109.5 |
| C2 |
C9 |
H8 |
109.5 |
109.5 |
| C2 |
C9 |
H9 |
109.5 |
109.5 |
| O12 |
C11 |
O13 |
122.9 |
120.0 |
| O8 |
C7 |
H1 |
118.6 |
120.0 |
| C3 |
C11 |
O13 |
122.7 |
120.0 |
| C11 |
C3 |
H10 |
108.8 |
108.7 |
| C15 |
N14 |
H14 |
118.6 |
120.0 |
| C15 |
C17 |
C28 |
112.7 |
109.5 |
| C15 |
C17 |
H15 |
106.0 |
109.5 |
| C11 |
O13 |
H11 |
109.5 |
116.9 |
| C29 |
C30 |
H18 |
124.8 |
125.2 |
| C33 |
O33 |
H16 |
109.5 |
117.0 |
| C33 |
C17 |
C28 |
118.2 |
109.5 |
| C33 |
C17 |
H15 |
106.5 |
109.5 |
| C17 |
C28 |
C32 |
118.4 |
122.5 |
| C28 |
C17 |
H15 |
106.7 |
109.4 |
| C28 |
C32 |
S31 |
107.6 |
109.6 |
| C28 |
C32 |
H17 |
126.2 |
125.2 |
| S31 |
C32 |
H17 |
126.2 |
125.2 |
| H4 |
C10 |
H5 |
109.4 |
109.4 |
| H4 |
C10 |
H6 |
109.5 |
109.4 |
| H5 |
C10 |
H6 |
109.5 |
109.5 |
| H7 |
C9 |
H8 |
109.5 |
109.5 |
| H7 |
C9 |
H9 |
109.5 |
109.5 |
| H8 |
C9 |
H9 |
109.5 |
109.5 |
Torsion Angles for XT8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S1 |
C5 |
N4 |
C3 |
30.8 |
317.5 |
| N4 |
C5 |
S1 |
H3 |
117.7 |
118.0 |
| S1 |
C5 |
N4 |
H12 |
150.5 |
81.4 |
| S1 |
C5 |
C6 |
N14 |
339.3 |
61.4 |
| S1 |
C5 |
C6 |
H2 |
101.5 |
181.4 |
| C5 |
S1 |
C2 |
C3 |
343.8 |
341.6 |
| C5 |
S1 |
C2 |
C9 |
226.7 |
223.1 |
| N4 |
C5 |
S1 |
C2 |
352.3 |
34.7 |
| S1 |
C5 |
N4 |
H3 |
244.4 |
242.0 |
| N4 |
C5 |
C6 |
N14 |
100.0 |
173.0 |
| N4 |
C5 |
C6 |
H2 |
222.1 |
293.0 |
| C5 |
N4 |
C3 |
H10 |
73.0 |
152.7 |
| C5 |
C6 |
C7 |
H1 |
287.4 |
300.2 |
| N14 |
C6 |
C5 |
H2 |
237.8 |
240.0 |
| C5 |
C6 |
N14 |
H14 |
275.2 |
335.0 |
| C2 |
S1 |
C5 |
N4 |
352.3 |
34.7 |
| C2 |
S1 |
C5 |
H3 |
234.6 |
276.7 |
| C10 |
C2 |
S1 |
C3 |
119.9 |
118.5 |
| C10 |
C2 |
S1 |
C9 |
236.9 |
237.0 |
| C9 |
C2 |
S1 |
C3 |
243.0 |
241.5 |
| S1 |
C2 |
C3 |
C11 |
159.6 |
117.0 |
| S1 |
C2 |
C3 |
H10 |
279.4 |
235.3 |
| S1 |
C2 |
C9 |
H7 |
180.0 |
58.5 |
| S1 |
C2 |
C9 |
H8 |
300.0 |
178.5 |
| S1 |
C2 |
C9 |
H9 |
60.0 |
298.5 |
| S1 |
C2 |
C10 |
C3 |
244.9 |
245.9 |
| S1 |
C2 |
C10 |
C9 |
124.0 |
123.0 |
| C9 |
C2 |
C10 |
C3 |
120.9 |
123.0 |
| C10 |
C2 |
C3 |
C11 |
41.9 |
358.5 |
| C10 |
C2 |
C3 |
H10 |
161.6 |
116.8 |
| C10 |
C2 |
C9 |
H7 |
302.1 |
181.5 |
| C10 |
C2 |
C9 |
H8 |
62.1 |
301.5 |
| C10 |
C2 |
C9 |
H9 |
182.1 |
61.5 |
| C3 |
N4 |
C5 |
H3 |
146.4 |
75.5 |
| C5 |
N4 |
C3 |
H12 |
119.7 |
123.9 |
| C2 |
C3 |
N4 |
H10 |
243.0 |
239.2 |
| C11 |
C3 |
N4 |
H10 |
119.9 |
118.3 |
| O16 |
C15 |
N14 |
H14 |
182.0 |
180.0 |
| O16 |
C15 |
C17 |
C28 |
255.4 |
360.0 |
| O16 |
C15 |
C17 |
H15 |
139.0 |
240.0 |
| O8 |
C7 |
C6 |
H1 |
180.0 |
179.8 |
| C5 |
C6 |
N14 |
H2 |
121.6 |
120.0 |
| N14 |
C6 |
C7 |
H1 |
162.7 |
180.2 |
| C15 |
N14 |
C6 |
H14 |
180.0 |
180.0 |
| C5 |
N4 |
C3 |
C2 |
316.1 |
31.8 |
| S1 |
C2 |
C3 |
C9 |
240.2 |
241.5 |
| C10 |
C2 |
C3 |
C9 |
122.4 |
123.0 |
| N4 |
C3 |
C2 |
H10 |
117.5 |
120.8 |
| C3 |
C2 |
C9 |
H7 |
65.2 |
304.5 |
| C3 |
C2 |
C9 |
H8 |
185.2 |
64.5 |
| C3 |
C2 |
C9 |
H9 |
305.2 |
184.5 |
| C2 |
C3 |
C11 |
O13 |
76.9 |
80.0 |
| C11 |
C3 |
C2 |
H10 |
240.3 |
241.7 |
| S1 |
C2 |
C9 |
C3 |
114.8 |
114.1 |
| C10 |
C2 |
C9 |
C3 |
236.9 |
237.0 |
| C9 |
C2 |
C3 |
C11 |
279.5 |
235.5 |
| C9 |
C2 |
C3 |
H10 |
39.2 |
353.8 |
| H7 |
C9 |
C2 |
H8 |
240.0 |
240.0 |
| H7 |
C9 |
C2 |
H9 |
120.0 |
120.0 |
| H8 |
C9 |
C2 |
H9 |
240.0 |
240.0 |
| C3 |
C11 |
O12 |
O13 |
179.7 |
180.1 |
| O12 |
C11 |
C3 |
H10 |
137.9 |
141.6 |
| O12 |
C11 |
O13 |
H11 |
0.0 |
0.1 |
| C6 |
C7 |
O8 |
H1 |
180.0 |
180.2 |
| C5 |
N4 |
C3 |
C11 |
193.0 |
271.0 |
| N4 |
C3 |
C11 |
H10 |
240.0 |
241.7 |
| C2 |
C3 |
C11 |
H10 |
119.3 |
118.4 |
| O12 |
C11 |
C3 |
O13 |
180.3 |
179.9 |
| C3 |
C11 |
O13 |
H11 |
180.4 |
180.0 |
| C15 |
N14 |
C6 |
H2 |
333.6 |
35.0 |
| C6 |
N14 |
C15 |
H14 |
180.0 |
180.0 |
| C17 |
C15 |
N14 |
H14 |
357.8 |
360.0 |
| C33 |
C17 |
C15 |
C28 |
130.7 |
120.0 |
| C33 |
C17 |
C15 |
H15 |
247.1 |
240.0 |
| C15 |
C17 |
C28 |
C32 |
230.3 |
60.0 |
| C28 |
C17 |
C15 |
H15 |
116.4 |
119.9 |
| O13 |
C11 |
C3 |
H10 |
317.6 |
321.7 |
| O32 |
C33 |
O33 |
H16 |
0.0 |
360.0 |
| O32 |
C33 |
C17 |
C28 |
29.1 |
120.1 |
| O32 |
C33 |
C17 |
H15 |
149.0 |
240.0 |
| C29 |
C28 |
C17 |
H15 |
165.5 |
359.7 |
| C29 |
C28 |
C32 |
H17 |
178.9 |
180.3 |
| O33 |
C33 |
C17 |
C28 |
201.4 |
300.0 |
| O33 |
C33 |
C17 |
H15 |
321.4 |
60.0 |
| C15 |
C17 |
C33 |
C28 |
232.6 |
240.0 |
| C15 |
C17 |
C33 |
H15 |
112.6 |
120.1 |
| C33 |
C17 |
C28 |
C32 |
106.1 |
300.0 |
| C28 |
C17 |
C33 |
H15 |
240.0 |
240.1 |
| C15 |
C17 |
C28 |
H15 |
244.1 |
240.0 |
| C33 |
C17 |
C28 |
H15 |
119.9 |
120.0 |
| C17 |
C28 |
C32 |
S31 |
178.2 |
180.0 |
| C17 |
C28 |
C32 |
H17 |
358.2 |
0.0 |
| C30 |
S31 |
C32 |
H17 |
180.9 |
180.0 |
| C32 |
C28 |
C17 |
H15 |
346.3 |
180.0 |
| S31 |
C32 |
C28 |
H17 |
180.0 |
180.0 |
| C28 |
C32 |
S31 |
H17 |
180.0 |
180.0 |
| C5 |
C6 |
H2 |
N14 |
234.5 |
240.0 |
| H2 |
C6 |
C7 |
H1 |
43.6 |
60.3 |
| H2 |
C6 |
N14 |
H14 |
153.6 |
215.0 |
| S1 |
C5 |
H3 |
N4 |
116.5 |
111.6 |
| H3 |
C5 |
S1 |
C2 |
234.6 |
276.7 |
| H3 |
C5 |
N4 |
C3 |
146.4 |
75.5 |
| H3 |
C5 |
N4 |
H12 |
266.1 |
199.4 |
| H3 |
C5 |
C6 |
N14 |
219.1 |
297.2 |
| H3 |
C5 |
C6 |
H2 |
341.2 |
57.2 |
| H4 |
C10 |
C2 |
C3 |
295.1 |
175.5 |
| H4 |
C10 |
C2 |
C9 |
56.0 |
298.5 |
| H5 |
C10 |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
C10 |
C2 |
C3 |
55.1 |
295.5 |
| H5 |
C10 |
C2 |
C9 |
176.0 |
58.4 |
| H4 |
C10 |
H5 |
H6 |
240.0 |
240.1 |
| H6 |
C10 |
C2 |
C3 |
175.1 |
55.6 |
| H6 |
C10 |
C2 |
C9 |
296.0 |
178.5 |
| H4 |
C10 |
H6 |
H5 |
120.0 |
119.9 |
| H7 |
C9 |
C2 |
C3 |
65.2 |
304.5 |
| C2 |
C9 |
H7 |
H8 |
120.0 |
120.0 |
| C2 |
C9 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
C9 |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
C9 |
C2 |
C3 |
185.2 |
64.5 |
| C2 |
C9 |
H8 |
H7 |
240.0 |
240.0 |
| C2 |
C9 |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
C9 |
H8 |
H9 |
240.0 |
240.0 |
| H9 |
C9 |
C2 |
C3 |
305.2 |
184.5 |
| C2 |
C9 |
H9 |
H7 |
120.0 |
120.0 |
| C2 |
C9 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C9 |
H9 |
H8 |
120.0 |
120.0 |
| C2 |
C3 |
H10 |
C11 |
238.3 |
241.7 |
| H10 |
C3 |
C11 |
O13 |
317.6 |
321.7 |
| C5 |
N4 |
H12 |
C3 |
242.0 |
236.2 |
| H12 |
N4 |
C5 |
H3 |
266.1 |
199.4 |
| H12 |
N4 |
C3 |
H10 |
313.4 |
28.8 |
| H14 |
N14 |
C6 |
H2 |
153.6 |
215.0 |
| C15 |
C17 |
H15 |
C28 |
120.3 |
120.0 |
| C33 |
C17 |
H15 |
C28 |
232.8 |
240.1 |
| H15 |
C17 |
C28 |
C32 |
346.3 |
180.0 |
| C28 |
C32 |
H17 |
S31 |
180.0 |
180.0 |
| H19 |
C29 |
C30 |
H18 |
0.1 |
359.7 |