PDB Chemical Component XS6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XS6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O14 |
N13 |
1.384 |
1.416 |
| O12 |
C11 |
1.242 |
1.213 |
| N13 |
C11 |
1.320 |
1.348 |
| N1 |
C2 |
1.452 |
1.469 |
| C11 |
C10 |
1.512 |
1.507 |
| C3 |
C2 |
1.525 |
1.530 |
| C3 |
C4 |
1.523 |
1.530 |
| C9 |
C10 |
1.518 |
1.529 |
| C9 |
C8 |
1.524 |
1.530 |
| C4 |
N5 |
1.451 |
1.470 |
| N5 |
C6 |
1.455 |
1.468 |
| C7 |
C8 |
1.526 |
1.530 |
| C7 |
C6 |
1.514 |
1.530 |
| C2 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.089 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H4 |
1.100 |
1.090 |
| C4 |
H5 |
1.100 |
1.091 |
| C4 |
H6 |
1.099 |
1.091 |
| C6 |
H7 |
1.100 |
1.090 |
| C6 |
H8 |
1.100 |
1.090 |
| C7 |
H9 |
1.100 |
1.090 |
| C7 |
H10 |
1.100 |
1.090 |
| C8 |
H11 |
1.100 |
1.090 |
| C8 |
H12 |
1.100 |
1.090 |
| C9 |
H13 |
1.100 |
1.090 |
| C9 |
H14 |
1.100 |
1.090 |
| C10 |
H15 |
1.100 |
1.090 |
| C10 |
H16 |
1.100 |
1.090 |
| N1 |
H17 |
1.000 |
1.009 |
| N1 |
H18 |
1.000 |
1.009 |
| N5 |
H20 |
1.001 |
1.009 |
| N13 |
H22 |
1.000 |
0.970 |
| O14 |
H23 |
0.950 |
0.967 |
Bond Angles for XS6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
N13 |
H22 |
119.0 |
120.0 |
| N1 |
C2 |
H1 |
109.2 |
109.4 |
| N1 |
C2 |
H2 |
109.2 |
109.5 |
| C11 |
C10 |
H15 |
108.8 |
109.5 |
| C11 |
C10 |
H16 |
108.7 |
109.4 |
| C3 |
C2 |
H1 |
109.1 |
109.5 |
| C3 |
C2 |
H2 |
109.1 |
109.5 |
| C3 |
C4 |
N5 |
110.6 |
109.5 |
| C4 |
C3 |
H3 |
109.3 |
109.4 |
| C4 |
C3 |
H4 |
109.3 |
109.5 |
| C3 |
C4 |
H5 |
109.2 |
109.5 |
| C3 |
C4 |
H6 |
109.2 |
109.5 |
| C10 |
C9 |
H13 |
109.7 |
109.5 |
| C10 |
C9 |
H14 |
109.6 |
109.5 |
| C9 |
C10 |
H15 |
108.8 |
109.5 |
| C9 |
C10 |
H16 |
108.8 |
109.5 |
| C9 |
C8 |
H11 |
109.5 |
109.4 |
| C9 |
C8 |
H12 |
109.5 |
109.5 |
| C4 |
N5 |
C6 |
121.5 |
111.0 |
| N5 |
C4 |
H5 |
109.2 |
109.5 |
| N5 |
C4 |
H6 |
109.2 |
109.5 |
| C4 |
N5 |
H20 |
106.4 |
111.0 |
| N5 |
C6 |
H7 |
108.9 |
109.5 |
| N5 |
C6 |
H8 |
108.8 |
109.5 |
| C8 |
C7 |
H9 |
108.6 |
109.5 |
| C8 |
C7 |
H10 |
108.6 |
109.5 |
| C7 |
C8 |
H11 |
109.5 |
109.5 |
| C7 |
C8 |
H12 |
109.5 |
109.4 |
| C7 |
C6 |
H7 |
108.9 |
109.5 |
| C7 |
C6 |
H8 |
108.8 |
109.4 |
| H1 |
C2 |
H2 |
109.5 |
109.5 |
| H3 |
C3 |
H4 |
109.5 |
109.5 |
| H5 |
C4 |
H6 |
109.5 |
109.4 |
| H7 |
C6 |
H8 |
109.5 |
109.5 |
| H9 |
C7 |
H10 |
109.5 |
109.5 |
| H11 |
C8 |
H12 |
109.5 |
109.5 |
| H13 |
C9 |
H14 |
109.5 |
109.5 |
| H15 |
C10 |
H16 |
109.4 |
109.4 |
| H17 |
N1 |
H18 |
109.5 |
111.1 |
Torsion Angles for XS6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
C11 |
C10 |
H15 |
80.1 |
240.0 |
| O12 |
C11 |
C10 |
H16 |
199.2 |
120.1 |
| N13 |
C11 |
C10 |
H15 |
260.7 |
60.0 |
| N13 |
C11 |
C10 |
H16 |
19.8 |
300.0 |
| C3 |
C2 |
N1 |
H1 |
239.8 |
120.0 |
| C3 |
C2 |
N1 |
H2 |
120.2 |
240.0 |
| H1 |
C2 |
N1 |
H2 |
240.4 |
120.0 |
| C11 |
C10 |
C9 |
H13 |
289.4 |
60.0 |
| C11 |
C10 |
C9 |
H14 |
49.6 |
300.0 |
| C9 |
C10 |
C11 |
H15 |
239.6 |
120.0 |
| C9 |
C10 |
C11 |
H16 |
120.4 |
240.0 |
| H15 |
C10 |
C11 |
H16 |
240.9 |
120.0 |
| N1 |
C2 |
C3 |
H1 |
120.2 |
240.0 |
| N1 |
C2 |
C3 |
H2 |
239.8 |
120.0 |
| H1 |
C2 |
C3 |
H2 |
119.6 |
240.0 |
| C4 |
C3 |
C2 |
H1 |
46.1 |
300.0 |
| C4 |
C3 |
C2 |
H2 |
286.5 |
60.0 |
| C3 |
C4 |
N5 |
C6 |
197.1 |
180.0 |
| N5 |
C4 |
C3 |
H5 |
239.8 |
240.0 |
| N5 |
C4 |
C3 |
H6 |
120.2 |
120.0 |
| C3 |
C4 |
N5 |
H20 |
318.7 |
303.9 |
| H3 |
C3 |
C4 |
H4 |
119.8 |
120.0 |
| H5 |
C4 |
C3 |
H6 |
240.3 |
240.0 |
| C11 |
C10 |
C9 |
H15 |
120.4 |
240.0 |
| C11 |
C10 |
C9 |
H16 |
239.6 |
120.0 |
| C10 |
C9 |
C8 |
H11 |
311.9 |
60.0 |
| C10 |
C9 |
C8 |
H12 |
71.9 |
300.0 |
| H13 |
C9 |
C10 |
H14 |
239.8 |
120.0 |
| H15 |
C10 |
C9 |
H16 |
119.1 |
240.0 |
| C9 |
C8 |
C7 |
H9 |
6.5 |
60.0 |
| C9 |
C8 |
C7 |
H10 |
125.6 |
300.0 |
| C7 |
C8 |
C9 |
H11 |
240.0 |
120.0 |
| C7 |
C8 |
C9 |
H12 |
120.0 |
240.0 |
| H11 |
C8 |
C9 |
H12 |
240.0 |
120.0 |
| N5 |
C4 |
C3 |
H3 |
186.4 |
60.0 |
| N5 |
C4 |
C3 |
H4 |
66.6 |
300.0 |
| C3 |
C4 |
N5 |
H5 |
120.2 |
120.0 |
| C3 |
C4 |
N5 |
H6 |
239.8 |
240.0 |
| C4 |
N5 |
C6 |
H7 |
134.2 |
60.0 |
| C4 |
N5 |
C6 |
H8 |
253.5 |
300.0 |
| H5 |
C4 |
N5 |
H6 |
119.6 |
119.9 |
| C6 |
N5 |
C4 |
H5 |
76.9 |
60.0 |
| C6 |
N5 |
C4 |
H6 |
317.2 |
300.0 |
| C4 |
N5 |
C6 |
H20 |
121.7 |
123.9 |
| C7 |
C6 |
N5 |
H7 |
239.6 |
120.0 |
| C7 |
C6 |
N5 |
H8 |
120.4 |
240.0 |
| H7 |
C6 |
N5 |
H8 |
240.8 |
120.0 |
| C9 |
C8 |
C7 |
H11 |
120.0 |
240.0 |
| C9 |
C8 |
C7 |
H12 |
240.0 |
120.0 |
| C8 |
C7 |
C6 |
H7 |
32.2 |
300.0 |
| C8 |
C7 |
C6 |
H8 |
273.0 |
60.0 |
| H9 |
C7 |
C8 |
H10 |
241.0 |
120.0 |
| H11 |
C8 |
C7 |
H12 |
120.0 |
240.0 |
| C4 |
N5 |
C6 |
C7 |
13.8 |
180.0 |
| N5 |
C6 |
C7 |
H7 |
120.4 |
240.0 |
| N5 |
C6 |
C7 |
H8 |
239.6 |
120.0 |
| H7 |
C6 |
C7 |
H8 |
119.2 |
240.0 |
| N1 |
C2 |
H1 |
H2 |
119.4 |
240.0 |
| C3 |
C2 |
H1 |
H2 |
240.6 |
120.0 |
| N1 |
C2 |
H2 |
H1 |
240.6 |
120.0 |
| C3 |
C2 |
H2 |
H1 |
119.4 |
240.0 |
| H3 |
C3 |
C2 |
H1 |
166.2 |
60.0 |
| H3 |
C3 |
C2 |
H2 |
46.6 |
180.0 |
| H3 |
C3 |
C4 |
N5 |
186.4 |
60.0 |
| C4 |
C3 |
H3 |
H4 |
240.3 |
240.0 |
| H3 |
C3 |
C4 |
H5 |
306.6 |
180.0 |
| H3 |
C3 |
C4 |
H6 |
66.3 |
300.0 |
| H4 |
C3 |
C2 |
H1 |
286.0 |
180.0 |
| H4 |
C3 |
C2 |
H2 |
166.4 |
300.0 |
| H4 |
C3 |
C4 |
N5 |
66.6 |
300.0 |
| C4 |
C3 |
H4 |
H3 |
119.7 |
120.0 |
| H4 |
C3 |
C4 |
H5 |
186.8 |
60.0 |
| H4 |
C3 |
C4 |
H6 |
306.5 |
180.0 |
| C3 |
C4 |
H5 |
N5 |
238.9 |
240.0 |
| H5 |
C4 |
C3 |
H3 |
306.6 |
180.0 |
| H5 |
C4 |
C3 |
H4 |
186.8 |
60.0 |
| C3 |
C4 |
H5 |
H6 |
119.5 |
120.0 |
| H5 |
C4 |
N5 |
C6 |
76.9 |
60.0 |
| N5 |
C4 |
H5 |
H6 |
240.6 |
240.0 |
| H5 |
C4 |
N5 |
H20 |
198.5 |
183.9 |
| C3 |
C4 |
H6 |
N5 |
121.0 |
120.0 |
| H6 |
C4 |
C3 |
H3 |
66.3 |
300.0 |
| H6 |
C4 |
C3 |
H4 |
306.5 |
180.0 |
| C3 |
C4 |
H6 |
H5 |
240.5 |
240.0 |
| H6 |
C4 |
N5 |
C6 |
317.2 |
300.0 |
| N5 |
C4 |
H6 |
H5 |
119.4 |
120.0 |
| H6 |
C4 |
N5 |
H20 |
78.9 |
64.0 |
| N5 |
C6 |
H7 |
H8 |
118.9 |
240.0 |
| C7 |
C6 |
H7 |
H8 |
241.1 |
120.0 |
| N5 |
C6 |
H8 |
H7 |
241.1 |
120.0 |
| C7 |
C6 |
H8 |
H7 |
118.9 |
240.0 |
| C8 |
C7 |
H9 |
H10 |
118.5 |
240.0 |
| H9 |
C7 |
C8 |
H11 |
246.6 |
180.0 |
| H9 |
C7 |
C8 |
H12 |
126.5 |
300.0 |
| H9 |
C7 |
C6 |
H7 |
271.8 |
60.0 |
| H9 |
C7 |
C6 |
H8 |
152.5 |
180.0 |
| C8 |
C7 |
H10 |
H9 |
241.5 |
120.0 |
| H10 |
C7 |
C8 |
H11 |
5.6 |
60.0 |
| H10 |
C7 |
C8 |
H12 |
245.5 |
180.0 |
| H10 |
C7 |
C6 |
H7 |
152.8 |
180.0 |
| H10 |
C7 |
C6 |
H8 |
33.5 |
300.0 |
| C9 |
C8 |
H11 |
H12 |
120.0 |
240.0 |
| H11 |
C8 |
C7 |
H9 |
246.6 |
180.0 |
| H11 |
C8 |
C7 |
H10 |
5.6 |
60.0 |
| C7 |
C8 |
H11 |
H12 |
239.9 |
119.9 |
| C9 |
C8 |
H12 |
H11 |
240.0 |
120.0 |
| H12 |
C8 |
C7 |
H9 |
126.5 |
300.0 |
| H12 |
C8 |
C7 |
H10 |
245.5 |
180.0 |
| C7 |
C8 |
H12 |
H11 |
120.0 |
240.1 |
| C10 |
C9 |
H13 |
H14 |
120.3 |
240.0 |
| H13 |
C9 |
C10 |
H15 |
169.0 |
180.0 |
| H13 |
C9 |
C10 |
H16 |
49.8 |
300.0 |
| H13 |
C9 |
C8 |
H11 |
191.9 |
180.0 |
| H13 |
C9 |
C8 |
H12 |
312.0 |
60.0 |
| C10 |
C9 |
H14 |
H13 |
239.7 |
120.0 |
| H14 |
C9 |
C10 |
H15 |
289.2 |
60.0 |
| H14 |
C9 |
C10 |
H16 |
170.1 |
180.0 |
| H14 |
C9 |
C8 |
H11 |
71.8 |
300.0 |
| H14 |
C9 |
C8 |
H12 |
191.8 |
180.0 |
| C11 |
C10 |
H15 |
H16 |
118.7 |
240.0 |
| H15 |
C10 |
C9 |
H13 |
169.0 |
180.0 |
| H15 |
C10 |
C9 |
H14 |
289.2 |
60.0 |
| C9 |
C10 |
H15 |
H16 |
241.3 |
120.0 |
| C11 |
C10 |
H16 |
H15 |
241.3 |
120.0 |
| H16 |
C10 |
C9 |
H13 |
49.8 |
300.0 |
| H16 |
C10 |
C9 |
H14 |
170.1 |
180.0 |
| C9 |
C10 |
H16 |
H15 |
118.7 |
240.0 |
| H17 |
N1 |
C2 |
H1 |
300.2 |
296.0 |
| H17 |
N1 |
C2 |
H2 |
59.8 |
176.0 |
| H18 |
N1 |
C2 |
H1 |
60.2 |
60.1 |
| H18 |
N1 |
C2 |
H2 |
179.8 |
300.1 |
| C4 |
N5 |
H20 |
C6 |
229.1 |
236.0 |
| H20 |
N5 |
C4 |
H5 |
198.5 |
183.9 |
| H20 |
N5 |
C4 |
H6 |
78.9 |
64.0 |
| H20 |
N5 |
C6 |
H7 |
12.6 |
296.1 |
| H20 |
N5 |
C6 |
H8 |
131.8 |
176.1 |
| H23 |
O14 |
N13 |
H22 |
181.1 |
0.1 |