PDB Chemical Component XRA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XRA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.355 1.342
N1 C6 1.362 1.319
O1 C8 1.370 1.358
O1 C12 1.432 1.429
C2 C3 1.485 1.417
C2 C7 1.382 1.400
N2 C4 1.355 1.325
N2 C6 1.362 1.330
O2 C9 1.384 1.361
O2 C14 1.433 1.429
C3 C4 1.484 1.415
C3 C10 1.398 1.401
N3 C4 1.352 1.380
O3 C22 1.220 1.217
N4 C6 1.402 1.384
N4 C17 1.457 1.469
N4 C21 1.461 1.468
O4 C23 1.367 1.349
O4 C25 1.481 1.340
N5 C18 1.464 1.471
N5 C20 1.470 1.471
N5 C22 1.338 1.348
C7 C8 1.390 1.377
C8 C9 1.498 1.402
C9 C10 1.400 1.365
C17 C18 1.524 1.532
C20 C21 1.528 1.533
C22 C23 1.494 1.467
C23 C27 1.387 1.365
C25 C26 1.382 1.352
C26 C27 1.384 1.403
N3 HN3 1.000 0.970
N3 HN3A 1.000 0.970
C7 H7 1.080 1.080
C10 H10 1.080 1.080
C12 H12 1.100 1.089
C12 H12A 1.100 1.091
C12 H12B 1.100 1.090
C14 H14 1.100 1.090
C14 H14A 1.101 1.089
C14 H14B 1.100 1.090
C17 H17 1.100 1.090
C17 H17A 1.100 1.090
C18 H18 1.100 1.090
C18 H18A 1.099 1.090
C20 H20 1.100 1.089
C20 H20A 1.100 1.090
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C25 H25 1.080 1.080
C26 H26 1.080 1.079
C27 H27 1.080 1.080

Bond Angles for XRA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.2 120.4
N1 C2 C3 119.7 118.8
N1 C2 C7 120.7 121.7
N1 C6 N2 122.1 122.7
N1 C6 N4 117.9 118.6
C8 O1 C12 119.1 117.0
O1 C8 C7 118.2 119.7
O1 C8 C9 120.9 119.6
O1 C12 H12 109.5 109.5
O1 C12 H12A 109.5 109.5
O1 C12 H12B 109.5 109.4
C3 C2 C7 119.6 119.4
C2 C3 C4 116.0 118.3
C2 C3 C10 121.0 119.9
C2 C7 C8 120.1 119.6
C2 C7 H7 120.0 120.3
C4 N2 C6 122.4 121.4
N2 C4 C3 118.6 118.4
N2 C4 N3 121.0 120.8
N2 C6 N4 120.0 118.6
C9 O2 C14 125.2 117.0
O2 C9 C8 118.7 119.6
O2 C9 C10 122.5 119.6
O2 C14 H14 109.5 109.4
O2 C14 H14A 109.5 109.5
O2 C14 H14B 109.4 109.5
C4 C3 C10 123.0 121.8
C3 C4 N3 120.4 120.8
C3 C10 C9 119.6 119.7
C3 C10 H10 120.2 120.1
C4 N3 HN3 109.5 120.0
C4 N3 HN3A 109.4 120.0
O3 C22 N5 121.4 120.0
O3 C22 C23 117.5 120.0
C6 N4 C17 119.3 111.0
C6 N4 C21 121.0 111.0
C17 N4 C21 119.8 111.3
N4 C17 C18 103.5 109.3
N4 C17 H17 111.5 109.5
N4 C17 H17A 111.5 109.5
N4 C21 C20 106.1 109.4
N4 C21 H21 110.6 109.6
N4 C21 H21A 110.6 109.5
C23 O4 C25 104.3 109.4
O4 C23 C22 116.0 126.0
O4 C23 C27 111.6 108.0
O4 C25 C26 107.6 108.8
O4 C25 H25 126.2 125.6
C18 N5 C20 117.0 118.3
C18 N5 C22 120.5 120.9
N5 C18 C17 105.7 108.5
N5 C18 H18 110.7 109.6
N5 C18 H18A 110.7 109.6
C20 N5 C22 122.5 120.8
N5 C20 C21 109.7 108.5
N5 C20 H20 109.4 109.7
N5 C20 H20A 109.4 109.6
N5 C22 C23 121.1 120.0
C7 C8 C9 121.0 120.7
C8 C7 H7 120.0 120.2
C8 C9 C10 118.8 120.8
C9 C10 H10 120.2 120.2
C18 C17 H17 111.5 109.5
C18 C17 H17A 111.5 109.5
C17 C18 H18 110.7 109.7
C17 C18 H18A 110.7 109.6
C21 C20 H20 109.4 109.7
C21 C20 H20A 109.4 109.6
C20 C21 H21 110.6 109.5
C20 C21 H21A 110.6 109.4
C22 C23 C27 132.4 126.0
C23 C27 C26 107.7 106.7
C23 C27 H27 126.1 126.6
C25 C26 C27 108.8 107.1
C26 C25 H25 126.2 125.6
C25 C26 H26 125.6 126.4
C27 C26 H26 125.6 126.5
C26 C27 H27 126.1 126.7
HN3 N3 HN3A 109.5 120.0
H12 C12 H12A 109.5 109.5
H12 C12 H12B 109.4 109.6
H12A C12 H12B 109.5 109.4
H14 C14 H14A 109.4 109.5
H14 C14 H14B 109.5 109.4
H14A C14 H14B 109.5 109.5
H17 C17 H17A 107.4 109.5
H18 C18 H18A 108.2 109.8
H20 C20 H20A 109.5 109.8
H21 C21 H21A 108.3 109.5

Torsion Angles for XRA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 N2 359.8 360.0
C2 N1 C6 N4 180.2 180.0
C3 C2 N1 C7 179.8 180.0
N1 C2 C3 C4 0.2 0.0
N1 C2 C3 C10 180.5 180.0
N1 C2 C7 C8 179.7 180.0
N1 C2 C7 H7 359.7 0.0
C6 N1 C2 C3 359.8 360.0
C6 N1 C2 C7 180.0 180.0
C4 N2 C6 N1 0.7 0.1
N2 C6 N1 N4 179.6 180.0
N1 C6 N4 C17 58.0 180.0
N1 C6 N4 C21 239.0 55.7
C8 O1 C12 H12 180.0 180.1
C8 O1 C12 H12A 300.0 300.1
C8 O1 C12 H12B 60.0 60.0
C2 C7 C8 O1 180.3 180.0
O2 C9 C8 O1 359.9 0.0
C7 C8 O1 C9 179.9 180.0
O1 C8 C7 H7 0.3 360.0
O1 C8 C9 C10 179.4 180.0
C12 O1 C8 C7 45.1 360.0
C12 O1 C8 C9 225.2 179.9
H12 C12 O1 H12A 240.0 240.0
H12 C12 O1 H12B 120.0 120.1
H12A C12 O1 H12B 240.0 240.1
C3 C2 N1 C6 359.8 360.0
N1 C2 C3 C7 180.2 180.0
C3 C2 C7 C8 359.9 360.0
C3 C2 C7 H7 179.9 180.0
N2 C4 C3 C2 0.2 0.0
C4 C3 C2 C10 179.7 180.0
C2 C3 C4 N3 179.8 180.0
C2 C3 C10 C9 359.5 0.0
C2 C3 C10 H10 179.5 180.0
C7 C2 N1 C6 180.0 180.0
N1 C2 C7 C3 179.8 180.0
O1 C8 C7 C2 180.3 180.0
C7 C2 C3 C4 180.0 180.0
C7 C2 C3 C10 0.2 360.0
C2 C7 C8 C9 0.2 0.0
C8 C7 C2 H7 180.0 180.0
N1 C6 N2 C4 0.7 0.1
C2 C3 C4 N2 0.2 0.0
C4 N2 C6 N4 180.2 180.1
N2 C4 C3 C10 179.9 180.1
C3 C4 N2 N3 179.6 179.9
N2 C4 N3 HN3 360.0 359.9
N2 C4 N3 HN3A 120.0 180.0
N1 C6 N2 N4 180.4 180.0
C6 N2 C4 C3 359.4 359.9
C6 N2 C4 N3 179.8 180.0
N2 C6 N4 C17 238.4 0.0
N2 C6 N4 C21 59.4 235.7
O1 C8 C9 O2 359.9 0.0
C9 O2 C14 H14 180.0 60.0
C9 O2 C14 H14A 300.0 179.9
C9 O2 C14 H14B 60.0 300.0
C3 C10 C9 O2 180.1 180.0
C7 C8 C9 O2 180.0 180.0
C8 C9 O2 C10 179.5 180.0
O2 C9 C10 H10 0.2 0.0
C14 O2 C9 C8 185.9 180.0
C14 O2 C9 C10 6.4 0.0
H14 C14 O2 H14A 240.0 240.0
H14 C14 O2 H14B 120.0 119.9
H14A C14 O2 H14B 240.0 239.9
C4 C3 C2 C7 180.0 180.0
C2 C3 C4 C10 180.3 179.9
C3 C4 N2 C6 359.4 359.9
N2 C4 C3 N3 180.4 180.1
C4 C3 C10 C9 179.8 180.0
C4 C3 C10 H10 359.8 359.9
C3 C4 N3 HN3 180.4 180.0
C3 C4 N3 HN3A 300.4 0.0
C10 C3 C2 C7 0.2 360.0
C2 C3 C10 C4 179.7 180.1
O2 C9 C10 C3 180.1 180.0
C10 C3 C4 N3 359.6 0.0
C8 C9 C10 C3 0.6 0.0
C9 C10 C3 H10 180.0 180.0
N3 C4 N2 C6 179.8 180.0
N2 C4 N3 C3 179.6 179.9
N3 C4 C3 C10 359.6 0.0
HN3 N3 C4 HN3A 240.0 179.9
O4 C23 C22 O3 113.0 172.5
C18 N5 C22 O3 354.9 353.1
C20 N5 C22 O3 175.2 173.0
N5 C22 O3 C23 180.5 179.9
O3 C22 C23 C27 293.2 352.5
N1 C6 N4 N2 179.6 180.0
C17 N4 C6 C21 179.0 124.3
C6 N4 C17 C18 229.0 172.7
C6 N4 C17 H17 349.0 292.7
C6 N4 C17 H17A 109.1 52.8
C6 N4 C21 C20 193.2 187.2
C6 N4 C21 H21 313.2 307.2
C6 N4 C21 H21A 73.2 67.4
C6 N4 C17 C21 180.9 235.8
C17 N4 C21 C20 14.2 63.1
C17 N4 C21 H21 134.2 183.1
C17 N4 C21 H21A 254.2 303.2
N5 C18 C17 N4 291.1 53.8
C18 C17 N4 H17 240.0 240.0
C18 C17 N4 H17A 120.0 119.9
N4 C17 C18 H18 171.1 294.2
N4 C17 C18 H18A 51.1 173.5
H17 C17 N4 H17A 240.0 239.9
C6 N4 C21 C17 179.0 124.1
C21 N4 C17 C18 48.1 296.9
C21 N4 C17 H17 168.1 56.8
C21 N4 C17 H17A 288.1 176.9
N5 C20 C21 N4 302.9 306.2
N4 C21 C20 H20 182.8 186.5
N4 C21 C20 H20A 62.9 65.9
C20 C21 N4 H21 240.0 240.0
C20 C21 N4 H21A 120.0 119.9
H21 C21 N4 H21A 240.0 239.9
O3 C22 C23 O4 113.0 172.5
C23 O4 C25 C26 0.2 0.0
C23 O4 C25 H25 180.1 180.0
N5 C22 C23 O4 292.5 352.6
C22 C23 O4 C27 180.2 180.0
O4 C23 C27 C26 0.2 360.0
O4 C23 C27 H27 180.2 180.1
C25 O4 C23 C22 180.0 180.0
C25 O4 C23 C27 359.8 360.0
O4 C25 C26 C27 360.0 360.0
C26 C25 O4 H25 180.0 180.0
O4 C25 C26 H26 180.0 180.0
O3 C22 N5 C18 354.9 353.1
N4 C17 C18 N5 291.1 53.8
C20 N5 C18 C22 179.7 180.1
C18 N5 C20 C21 35.6 51.1
C18 N5 C20 H20 155.7 170.9
C18 N5 C20 H20A 275.6 291.5
C18 N5 C22 C23 175.3 173.0
N5 C18 C17 H17 171.1 293.9
N5 C18 C17 H17A 51.1 173.8
C17 C18 N5 H18 240.0 240.3
C17 C18 N5 H18A 120.0 119.7
H18 C18 N5 H18A 240.0 239.4
O3 C22 N5 C20 175.2 173.0
N4 C21 C20 N5 302.9 306.2
C18 N5 C20 C22 180.3 179.9
C20 N5 C18 C17 28.2 308.8
C20 N5 C18 H18 148.2 68.6
C20 N5 C18 H18A 268.2 189.1
C20 N5 C22 C23 355.7 352.9
C21 C20 N5 H20 240.0 240.2
C21 C20 N5 H20A 120.0 119.6
N5 C20 C21 H21 182.9 186.2
N5 C20 C21 H21A 62.9 66.2
H20 C20 N5 H20A 240.0 239.4
O3 C22 N5 C23 179.5 180.1
O4 C23 C22 N5 292.5 352.6
C18 N5 C22 C20 179.7 180.1
C22 N5 C18 C17 208.5 128.7
C22 N5 C18 H18 328.5 248.5
C22 N5 C18 H18A 88.5 9.0
C22 N5 C20 C21 215.3 231.2
C22 N5 C20 H20 335.4 351.0
C22 N5 C20 H20A 95.3 111.6
N5 C22 C23 C27 112.7 172.6
C7 C8 O1 C12 45.1 360.0
O1 C8 C7 C9 180.1 180.0
C2 C7 C8 H7 180.0 180.0
O2 C9 C8 C7 180.0 180.0
C7 C8 C9 C10 359.5 360.0
C9 C8 O1 C12 225.2 179.9
O1 C8 C9 C7 179.9 180.0
C8 C9 O2 C14 185.9 180.0
O2 C9 C8 C10 180.5 180.0
C3 C10 C9 C8 0.6 0.0
C9 C8 C7 H7 180.2 180.0
C8 C9 C10 H10 180.6 180.1
C10 C9 O2 C14 6.4 0.0
O2 C9 C10 C8 179.5 180.0
C3 C10 C9 H10 180.0 180.0
C18 C17 N4 C21 48.1 296.9
N4 C17 C18 H17 120.0 119.9
N4 C17 C18 H17A 240.0 240.1
C17 C18 N5 C20 28.2 308.8
C17 C18 N5 C22 208.5 128.7
N5 C18 C17 H18 120.0 119.7
N5 C18 C17 H18A 240.0 240.3
H17 C17 C18 H17A 120.0 120.1
H18 C18 C17 H18A 120.0 120.7
N4 C21 C20 H21 120.0 120.0
N4 C21 C20 H21A 240.0 240.0
C21 C20 N5 C22 215.3 231.2
N5 C20 C21 H20 120.0 119.8
N5 C20 C21 H20A 240.0 240.4
H20 C20 C21 H20A 120.0 120.6
H21 C21 C20 H21A 120.0 120.0
O3 C22 C23 N5 180.5 179.9
C22 C23 O4 C25 180.0 180.0
O4 C23 C22 C27 179.8 180.0
C22 C23 C27 C26 180.0 180.0
C22 C23 C27 H27 360.0 0.1
C27 C23 O4 C25 359.8 360.0
O4 C23 C27 C22 180.2 180.0
C25 C26 C27 C23 359.9 0.0
C23 C27 C26 H26 179.9 180.0
C26 C27 C23 H27 180.0 179.9
O4 C25 C26 H25 180.0 180.0
C23 C27 C26 C25 359.9 0.0
C27 C26 C25 H26 180.0 180.0
C25 C26 C27 H27 179.9 180.0
C23 C27 C26 H27 180.0 180.1
C27 C26 C25 H25 180.0 180.0
C25 C26 C27 H26 180.0 180.0
C4 N3 HN3 HN3A 120.0 180.1
C4 N3 HN3A HN3 240.0 179.9
C2 C7 H7 C8 180.0 180.0
H7 C7 C8 C9 180.2 180.0
C3 C10 H10 C9 180.0 180.0
O1 C12 H12 H12A 120.0 120.0
O1 C12 H12 H12B 240.0 240.0
H12A C12 H12 H12B 120.0 120.0
O1 C12 H12A H12 240.0 240.0
O1 C12 H12A H12B 120.0 119.9
H12 C12 H12A H12B 240.0 239.9
O1 C12 H12B H12 120.0 120.0
O1 C12 H12B H12A 240.0 240.0
H12 C12 H12B H12A 120.0 120.0
O2 C14 H14 H14A 120.0 120.0
O2 C14 H14 H14B 240.0 240.0
H14A C14 H14 H14B 120.0 120.0
O2 C14 H14A H14 239.9 240.0
O2 C14 H14A H14B 120.0 120.1
H14 C14 H14A H14B 240.0 240.0
O2 C14 H14B H14 120.0 120.0
O2 C14 H14B H14A 240.0 239.9
H14 C14 H14B H14A 120.0 120.0
H17 C17 N4 C21 168.1 56.8
N4 C17 H17 C18 244.8 240.2
N4 C17 H17 H17A 122.4 120.1
C18 C17 H17 H17A 237.6 239.9
H17 C17 C18 H18 51.1 174.2
H17 C17 C18 H18A 291.1 53.6
H17A C17 N4 C21 288.1 176.9
N4 C17 H17A C18 115.2 119.8
N4 C17 H17A H17 237.6 239.9
C18 C17 H17A H17 122.4 120.1
H17A C17 C18 H18 291.1 54.1
H17A C17 C18 H18A 171.1 293.4
H18 C18 N5 C20 148.2 68.6
H18 C18 N5 C22 328.5 248.5
N5 C18 H18 C17 243.1 241.0
N5 C18 H18 H18A 121.5 120.4
H18 C18 C17 H17 51.1 174.2
H18 C18 C17 H17A 291.1 54.1
C17 C18 H18 H18A 238.5 239.5
H18A C18 N5 C20 268.2 189.1
H18A C18 N5 C22 88.5 9.0
N5 C18 H18A C17 117.0 119.0
N5 C18 H18A H18 238.5 239.6
H18A C18 C17 H17 291.1 53.6
H18A C18 C17 H17A 171.1 293.4
C17 C18 H18A H18 121.5 120.6
H20 C20 N5 C22 335.4 351.0
N5 C20 H20 C21 239.8 240.9
N5 C20 H20 H20A 119.9 120.5
C21 C20 H20 H20A 240.1 239.5
H20 C20 C21 H21 62.8 66.4
H20 C20 C21 H21A 302.9 306.4
H20A C20 N5 C22 95.3 111.6
N5 C20 H20A C21 120.2 119.0
N5 C20 H20A H20 240.1 239.5
C21 C20 H20A H20 119.9 120.5
H20A C20 C21 H21 302.9 305.9
H20A C20 C21 H21A 182.9 185.8
N4 C21 H21 C20 242.8 240.1
N4 C21 H21 H21A 121.4 120.2
H21 C21 C20 H20 62.8 66.4
H21 C21 C20 H20A 302.9 305.9
C20 C21 H21 H21A 238.6 240.1
N4 C21 H21A C20 117.3 119.9
N4 C21 H21A H21 238.6 239.8
H21A C21 C20 H20 302.9 306.4
H21A C21 C20 H20A 182.9 185.8
C20 C21 H21A H21 121.4 120.0
O4 C25 H25 C26 180.0 180.1
H25 C25 C26 C27 180.0 180.0
H25 C25 C26 H26 0.0 360.0
C25 C26 H26 C27 180.0 180.0
H26 C26 C25 H25 0.0 360.0
H26 C26 C27 H27 359.9 360.0
C23 C27 H27 C26 180.0 179.9
H27 C27 C26 H26 359.9 360.0