PDB Chemical Component XQI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XQI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CG |
CD1 |
1.389 |
1.381 |
| CG |
CD2 |
1.390 |
1.382 |
| CG |
C9 |
1.512 |
1.508 |
| CD1 |
CE1 |
1.390 |
1.388 |
| CD2 |
CE2 |
1.390 |
1.388 |
| CE1 |
CZ |
1.390 |
1.386 |
| CE1 |
OH1 |
1.362 |
1.359 |
| CE2 |
CZ |
1.389 |
1.387 |
| CE2 |
OH2 |
1.362 |
1.359 |
| C |
O |
1.220 |
1.208 |
| C |
OXT |
1.454 |
1.343 |
| C |
C9 |
1.510 |
1.507 |
| OXT |
CH3 |
1.426 |
1.453 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| C9 |
H91C |
1.100 |
1.090 |
| C9 |
H92C |
1.100 |
1.089 |
| CZ |
HZ |
1.080 |
1.080 |
| OH1 |
HH1 |
0.950 |
0.967 |
| OH2 |
HH2 |
0.950 |
0.967 |
| CH3 |
HH31 |
1.100 |
1.090 |
| CH3 |
HH32 |
1.100 |
1.089 |
| CH3 |
HH33 |
1.100 |
1.090 |
Bond Angles for XQI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD1 |
CG |
CD2 |
120.0 |
120.2 |
| CD1 |
CG |
C9 |
120.0 |
119.9 |
| CG |
CD1 |
CE1 |
120.0 |
120.0 |
| CG |
CD1 |
HD1 |
120.0 |
120.0 |
| CD2 |
CG |
C9 |
120.0 |
119.9 |
| CG |
CD2 |
CE2 |
120.0 |
120.1 |
| CG |
CD2 |
HD2 |
120.0 |
120.0 |
| CG |
C9 |
C |
109.5 |
109.5 |
| CG |
C9 |
H91C |
109.5 |
109.4 |
| CG |
C9 |
H92C |
109.5 |
109.5 |
| CD1 |
CE1 |
CZ |
120.0 |
120.0 |
| CD1 |
CE1 |
OH1 |
120.0 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.0 |
120.0 |
| CD2 |
CE2 |
CZ |
120.0 |
119.9 |
| CD2 |
CE2 |
OH2 |
120.0 |
120.1 |
| CE2 |
CD2 |
HD2 |
120.0 |
119.9 |
| CZ |
CE1 |
OH1 |
120.0 |
120.0 |
| CE1 |
CZ |
CE2 |
120.0 |
119.9 |
| CE1 |
CZ |
HZ |
120.0 |
120.1 |
| CE1 |
OH1 |
HH1 |
109.5 |
114.1 |
| CZ |
CE2 |
OH2 |
120.0 |
120.0 |
| CE2 |
CZ |
HZ |
120.0 |
120.1 |
| CE2 |
OH2 |
HH2 |
109.5 |
114.0 |
| O |
C |
OXT |
119.2 |
120.0 |
| O |
C |
C9 |
120.7 |
120.0 |
| C9 |
C |
OXT |
120.2 |
120.0 |
| C |
OXT |
CH3 |
120.0 |
117.0 |
| C |
C9 |
H91C |
109.5 |
109.4 |
| C |
C9 |
H92C |
109.5 |
109.5 |
| OXT |
CH3 |
HH31 |
109.5 |
109.4 |
| OXT |
CH3 |
HH32 |
109.5 |
109.5 |
| OXT |
CH3 |
HH33 |
109.5 |
109.4 |
| H91C |
C9 |
H92C |
109.5 |
109.5 |
| HH31 |
CH3 |
HH32 |
109.4 |
109.5 |
| HH31 |
CH3 |
HH33 |
109.5 |
109.5 |
| HH32 |
CH3 |
HH33 |
109.5 |
109.5 |
Torsion Angles for XQI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD2 |
CG |
CD1 |
C9 |
180.0 |
180.3 |
| CD1 |
CG |
CD2 |
CE2 |
0.0 |
0.0 |
| CD1 |
CG |
CD2 |
HD2 |
180.1 |
180.0 |
| CD1 |
CG |
C9 |
C |
134.2 |
90.0 |
| CD1 |
CG |
C9 |
H91C |
254.2 |
210.0 |
| CD1 |
CG |
C9 |
H92C |
14.2 |
330.0 |
| CG |
CD1 |
CE1 |
CZ |
0.0 |
359.9 |
| CG |
CD1 |
CE1 |
OH1 |
180.0 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CD1 |
CG |
CD2 |
C9 |
180.0 |
179.7 |
| CD2 |
CG |
CD1 |
CE1 |
360.0 |
0.0 |
| CD2 |
CG |
CD1 |
HD1 |
180.0 |
180.0 |
| CD2 |
CG |
C9 |
C |
314.2 |
269.8 |
| CD2 |
CG |
C9 |
H91C |
74.2 |
29.7 |
| CD2 |
CG |
C9 |
H92C |
194.2 |
149.7 |
| CG |
CD2 |
CE2 |
CZ |
360.0 |
360.0 |
| CG |
CD2 |
CE2 |
OH2 |
179.9 |
180.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CD1 |
CG |
C9 |
CD2 |
180.0 |
180.3 |
| C9 |
CG |
CD1 |
CE1 |
180.0 |
179.8 |
| C9 |
CG |
CD1 |
HD1 |
0.0 |
359.7 |
| C9 |
CG |
CD2 |
CE2 |
180.0 |
180.3 |
| C9 |
CG |
CD2 |
HD2 |
0.0 |
0.3 |
| O |
C |
C9 |
CG |
49.9 |
360.0 |
| CG |
C9 |
C |
OXT |
229.8 |
180.0 |
| C |
C9 |
CG |
H91C |
240.0 |
240.1 |
| C |
C9 |
CG |
H92C |
120.0 |
120.0 |
| H91C |
C9 |
CG |
H92C |
240.0 |
240.0 |
| CE1 |
CD1 |
CG |
CD2 |
360.0 |
0.0 |
| CE1 |
CD1 |
CG |
C9 |
180.0 |
179.8 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
OH1 |
180.1 |
179.9 |
| CD1 |
CE1 |
CZ |
CE2 |
360.0 |
0.1 |
| CD1 |
CE1 |
CZ |
HZ |
180.0 |
180.0 |
| CD1 |
CE1 |
OH1 |
HH1 |
180.0 |
89.9 |
| CE2 |
CD2 |
CG |
C9 |
180.0 |
180.3 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
0.0 |
360.0 |
| CZ |
CE2 |
CD2 |
OH2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HZ |
180.0 |
180.1 |
| CD2 |
CE2 |
OH2 |
HH2 |
180.0 |
90.0 |
| CD1 |
CE1 |
CZ |
OH1 |
179.9 |
180.1 |
| CZ |
CE1 |
CD1 |
HD1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
0.0 |
360.0 |
| CZ |
CE1 |
OH1 |
HH1 |
359.9 |
270.0 |
| CE1 |
CZ |
CE2 |
OH2 |
180.1 |
180.0 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
180.1 |
| CD1 |
CE1 |
OH1 |
CZ |
180.1 |
179.9 |
| OH1 |
CE1 |
CD1 |
HD1 |
360.0 |
0.0 |
| OH1 |
CE1 |
CZ |
CE2 |
180.0 |
180.0 |
| OH1 |
CE1 |
CZ |
HZ |
0.0 |
359.9 |
| CD2 |
CE2 |
CZ |
OH2 |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HD2 |
179.9 |
180.0 |
| CE2 |
CZ |
CE1 |
OH1 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
179.9 |
| CZ |
CE2 |
OH2 |
HH2 |
360.0 |
270.0 |
| CD2 |
CE2 |
OH2 |
CZ |
180.0 |
180.0 |
| OH2 |
CE2 |
CD2 |
HD2 |
359.9 |
360.0 |
| OH2 |
CE2 |
CZ |
HZ |
0.1 |
0.1 |
| CG |
C9 |
C |
O |
49.9 |
360.0 |
| C9 |
C |
O |
OXT |
180.0 |
180.1 |
| O |
C |
OXT |
CH3 |
316.2 |
0.1 |
| O |
C |
C9 |
H91C |
289.9 |
240.0 |
| O |
C |
C9 |
H92C |
169.9 |
120.0 |
| O |
C |
OXT |
C9 |
180.0 |
180.1 |
| OXT |
C |
C9 |
H91C |
109.8 |
60.1 |
| OXT |
C |
C9 |
H92C |
349.8 |
300.0 |
| C |
OXT |
CH3 |
HH31 |
180.0 |
300.0 |
| C |
OXT |
CH3 |
HH32 |
300.0 |
60.0 |
| C |
OXT |
CH3 |
HH33 |
60.0 |
179.9 |
| CG |
C9 |
C |
H91C |
120.0 |
119.9 |
| CG |
C9 |
C |
H92C |
240.0 |
240.0 |
| O |
C |
C9 |
OXT |
180.0 |
179.9 |
| C9 |
C |
OXT |
CH3 |
136.2 |
180.0 |
| H91C |
C9 |
C |
H92C |
120.0 |
120.1 |
| HH31 |
CH3 |
OXT |
HH32 |
240.1 |
240.0 |
| HH31 |
CH3 |
OXT |
HH33 |
120.0 |
120.0 |
| HH32 |
CH3 |
OXT |
HH33 |
240.0 |
240.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.0 |
180.0 |
| HD1 |
CD1 |
CG |
C9 |
0.0 |
359.7 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
OH1 |
360.0 |
0.0 |
| HD2 |
CD2 |
CG |
C9 |
0.0 |
0.3 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
179.9 |
180.0 |
| HD2 |
CD2 |
CE2 |
OH2 |
359.9 |
360.0 |
| CG |
C9 |
H91C |
C |
240.0 |
240.1 |
| CG |
C9 |
H91C |
H92C |
120.0 |
120.0 |
| H91C |
C9 |
C |
OXT |
109.8 |
60.1 |
| C |
C9 |
H91C |
H92C |
240.0 |
239.9 |
| CG |
C9 |
H92C |
C |
120.0 |
120.0 |
| CG |
C9 |
H92C |
H91C |
240.0 |
240.0 |
| H92C |
C9 |
C |
OXT |
349.8 |
300.0 |
| C |
C9 |
H92C |
H91C |
120.0 |
120.0 |
| HZ |
CZ |
CE1 |
OH1 |
0.0 |
359.9 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
180.1 |
| HZ |
CZ |
CE2 |
OH2 |
0.1 |
0.1 |
| OXT |
CH3 |
HH31 |
HH32 |
120.0 |
120.0 |
| OXT |
CH3 |
HH31 |
HH33 |
240.0 |
240.0 |
| HH32 |
CH3 |
HH31 |
HH33 |
120.0 |
120.0 |
| OXT |
CH3 |
HH32 |
HH31 |
240.0 |
240.0 |
| OXT |
CH3 |
HH32 |
HH33 |
120.0 |
120.0 |
| HH31 |
CH3 |
HH32 |
HH33 |
240.0 |
239.9 |
| OXT |
CH3 |
HH33 |
HH31 |
120.0 |
120.0 |
| OXT |
CH3 |
HH33 |
HH32 |
240.0 |
240.0 |
| HH31 |
CH3 |
HH33 |
HH32 |
119.9 |
120.0 |