PDB Chemical Component XPR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XPR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CD 1.479 1.476
N CA 1.479 1.483
CD CG 1.562 1.539
CD C14 1.550 1.510
CD HD2 1.100 1.090
CG CB 1.553 1.555
CG C11 1.514 1.530
CG HG2 1.100 1.090
CB CA 1.519 1.542
CB HB2 1.100 1.090
CB HB3 1.100 1.090
CA C 1.552 1.507
CA HA 1.100 1.090
C14 C13 1.541 1.529
C14 H25 1.100 1.090
C14 H26 1.099 1.090
C13 C12 1.536 1.533
C13 O2 1.450 1.429
C13 H27 1.100 1.090
C12 C11 1.522 1.526
C12 H28 1.100 1.090
C12 H29 1.100 1.090
C11 H30 1.100 1.090
C11 H31 1.100 1.090
O2 S 1.591 1.522
S OS1 1.401 1.421
S OS2 1.552 1.522
S OS3 1.438 1.421
OS2 H32 0.950 0.967
C O 1.246 1.208
N H 1.000 1.010
C OXT   1.342
OXT HXT   0.968

Bond Angles for XPR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CD N CA 110.6 105.0
N CD CG 104.1 104.1
N CD C14 110.5 112.8
N CD HD2 112.9 109.0
CD N H 109.1 111.0
N CA CB 106.3 107.1
N CA C 109.4 109.9
N CA HA 113.0 109.9
CA N H 109.1 111.0
CG CD C14 111.2 113.3
CG CD HD2 112.3 109.1
CD CG CB 102.7 101.7
CD CG C11 117.3 110.7
CD CG HG2 110.3 112.2
C14 CD HD2 106.0 108.4
CD C14 C13 112.7 111.4
CD C14 H25 108.4 109.1
CD C14 H26 108.4 109.1
CB CG C11 113.1 106.7
CB CG HG2 114.7 112.4
CG CB CA 106.4 104.9
CG CB HB2 110.5 110.4
CG CB HB3 110.5 110.3
C11 CG HG2 99.2 112.6
CG C11 C12 113.0 110.9
CG C11 H30 108.3 109.2
CG C11 H31 108.3 109.2
CA CB HB2 110.5 110.4
CA CB HB3 110.5 110.3
CB CA C 113.3 109.9
CB CA HA 109.0 109.9
HB2 CB HB3 108.4 110.4
C CA HA 105.9 110.1
CA C O 124.6 120.0
CA C OXT   120.0
C13 C14 H25 108.4 109.1
C13 C14 H26 108.4 109.0
C14 C13 C12 107.9 108.3
C14 C13 O2 111.8 109.7
C14 C13 H27 110.3 109.7
H25 C14 H26 110.5 109.1
C12 C13 O2 113.0 109.7
C12 C13 H27 108.9 109.7
C13 C12 C11 108.4 108.6
C13 C12 H28 109.8 109.7
C13 C12 H29 109.8 109.6
O2 C13 H27 104.9 109.7
C13 O2 S 128.2 114.0
C11 C12 H28 109.8 109.6
C11 C12 H29 109.8 109.6
C12 C11 H30 108.3 109.2
C12 C11 H31 108.3 109.2
H28 C12 H29 109.1 109.7
H30 C11 H31 110.6 109.1
O2 S OS1 104.1 106.4
O2 S OS2 111.1 107.2
O2 S OS3 109.1 106.4
OS1 S OS2 100.6 106.4
OS1 S OS3 121.3 123.2
OS2 S OS3 110.2 106.4
S OS2 H32 109.5 114.0
O C OXT   120.0
C OXT HXT   117.0

Torsion Angles for XPR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CD N CA CB 352.9 24.7
CD N CA C 115.6 144.1
CD N CA HA 233.3 265.4
CA N CD H 240.0 240.0
CG CD N C14 119.5 123.2
CG CD N HD2 238.0 243.7
N CD CG CB 328.8 39.8
N CD CG C11 204.1 286.7
N CD CG HG2 91.6 160.1
C14 CD N HD2 118.5 120.5
N CD C14 C13 161.3 65.1
N CD C14 H25 281.3 185.6
N CD C14 H26 41.3 304.7
CA N CD CG 24.4 319.4
CA N CD C14 264.9 196.2
CA N CD HD2 146.4 75.7
CD N CA H 120.0 120.0
CG CB CA N 346.5 0.5
N CA CB HB2 226.6 241.6
N CA CB HB3 106.6 119.3
CB CA N C 237.3 240.6
CB CA N HA 119.6 119.3
C CA N HA 242.3 238.7
N CA C O 326.5 341.5
N CA C OXT   161.4
CG CD N CA 24.4 319.4
N CD CG C14 241.0 237.1
N CD CG HD2 122.4 116.2
CG CD N H 144.4 79.4
C14 CD CG HD2 241.4 239.2
CG CD C14 C13 46.2 307.2
CG CD C14 H25 166.2 67.6
CG CD C14 H26 286.2 186.7
CB CG CD C11 124.7 113.1
CB CG CD HG2 237.2 239.7
CD CG CB CA 27.5 336.0
CD CG CB HB2 147.4 94.9
CD CG CB HB3 267.5 217.2
C11 CG CD HG2 112.5 126.6
CD CG C11 C12 43.4 305.8
CD CG C11 H30 163.3 66.2
CD CG C11 H31 283.4 185.4
C14 CD N CA 264.9 196.2
N CD C14 CG 115.1 117.9
N CD C14 HD2 237.3 239.1
C14 CD N H 24.9 316.2
CG CD C14 HD2 122.3 121.2
C14 CD CG CB 87.9 162.7
C14 CD CG C11 323.1 49.6
C14 CD CG HG2 210.6 283.0
C13 C14 CD H25 240.0 239.5
C13 C14 CD H26 120.0 120.5
CD C14 C13 C12 297.8 59.1
CD C14 C13 O2 62.7 178.8
CD C14 C13 H27 178.9 299.4
H25 C14 CD H26 240.0 240.9
HD2 CD N CA 146.4 75.7
N CD HD2 CG 242.7 247.0
N CD HD2 C14 121.1 123.2
HD2 CD N H 266.4 195.7
CG CD HD2 C14 238.4 236.2
HD2 CD CG CB 206.4 283.5
HD2 CD CG C11 81.7 170.5
HD2 CD CG HG2 329.2 43.8
HD2 CD C14 C13 283.9 186.0
HD2 CD C14 H25 43.9 306.4
HD2 CD C14 H26 163.9 65.5
N CA CB CG 346.5 0.5
CB CG CD C14 87.9 162.7
CB CG CD HD2 206.4 283.5
CD CG CB C11 232.6 244.0
CD CG CB HG2 119.7 120.2
C11 CG CB HG2 247.1 236.2
CB CG C11 C12 284.0 195.9
CB CG C11 H30 44.0 316.3
CB CG C11 H31 164.0 75.5
CA CB CG HB2 240.0 241.1
CA CB CG HB3 120.0 118.8
CG CB CA C 226.4 241.1
CG CB CA HA 108.7 119.8
HB2 CB CG HB3 240.0 237.7
C11 CG CD C14 323.1 49.6
C11 CG CD HD2 81.7 170.5
CD CG C11 CB 119.4 109.9
CD CG C11 HG2 241.4 233.6
CB CG C11 HG2 122.0 123.7
C11 CG CB CA 154.9 92.0
C11 CG CB HB2 274.9 210.9
C11 CG CB HB3 34.9 333.2
C13 C12 C11 CG 302.9 62.1
CG C11 C12 H28 182.9 302.3
CG C11 C12 H29 62.9 181.9
C12 C11 CG H30 240.0 239.6
C12 C11 CG H31 120.0 120.4
H30 C11 CG H31 240.0 240.8
HG2 CG CD C14 210.6 283.0
HG2 CG CD HD2 329.2 43.8
CD CG HG2 CB 244.6 246.1
CD CG HG2 C11 123.8 125.6
CB CG HG2 C11 239.2 239.5
HG2 CG CB CA 267.8 215.8
HG2 CG CB HB2 27.7 334.7
HG2 CG CB HB3 147.8 97.0
HG2 CG C11 C12 162.0 72.2
HG2 CG C11 H30 282.0 192.6
HG2 CG C11 H31 42.0 311.8
N CA CB C 120.2 119.4
N CA CB HA 237.9 240.7
CB CA N H 232.9 264.7
CA CB CG C11 154.9 92.0
CA CB CG HG2 267.8 215.8
CG CB CA HB2 120.0 118.9
CG CB CA HB3 240.0 241.2
HB2 CB CA HB3 120.0 122.3
C CA CB HA 117.7 121.3
CB CA C O 84.9 99.1
CB CA C OXT   279.1
HB2 CB CG C11 274.9 210.9
HB2 CB CG HG2 27.7 334.7
CG CB HB2 CA 242.6 244.5
CG CB HB2 HB3 121.3 122.3
CA CB HB2 HB3 238.8 237.7
HB2 CB CA C 106.4 122.2
HB2 CB CA HA 348.7 0.9
HB3 CB CG C11 34.9 333.2
HB3 CB CG HG2 147.8 97.0
CG CB HB3 CA 117.5 115.4
CG CB HB3 HB2 238.7 237.7
CA CB HB3 HB2 121.2 122.3
HB3 CB CA C 346.4 359.9
HB3 CB CA HA 228.7 238.6
N CA C CB 241.6 242.4
N CA C HA 122.1 121.2
C CA N H 355.6 24.1
C CA CB HB2 106.4 122.2
C CA CB HB3 346.4 359.9
CB CA C HA 240.5 238.9
O C CA OXT   180.0
CA C OXT HXT   180.0
N CA HA CB 118.0 117.6
N CA HA C 240.3 238.8
HA CA N H 113.3 145.4
HA CA CB HB2 348.7 0.9
HA CA CB HB3 228.7 238.6
CB CA HA C 122.3 121.2
HA CA C O 204.4 220.2
HA CA C OXT   40.2
C13 C14 CD HD2 283.9 186.0
CD C14 C13 H25 120.0 120.5
CD C14 C13 H26 240.0 239.5
H25 C14 C13 H26 120.0 119.0
C12 C13 C14 O2 235.1 240.3
C12 C13 C14 H27 118.9 119.7
C14 C13 C12 C11 66.1 296.5
C14 C13 C12 H28 186.1 56.3
C14 C13 C12 H29 306.1 176.8
O2 C13 C14 H27 243.7 239.4
C14 C13 O2 S 166.3 145.0
H25 C14 CD HD2 43.9 306.4
CD C14 H25 C13 237.4 238.1
CD C14 H25 H26 118.7 119.1
C13 C14 H25 H26 241.3 241.0
H25 C14 C13 C12 177.8 298.6
H25 C14 C13 O2 302.6 58.3
H25 C14 C13 H27 58.9 178.9
H26 C14 CD HD2 163.9 65.5
CD C14 H26 C13 122.6 121.9
CD C14 H26 H25 241.3 240.9
C13 C14 H26 H25 118.7 119.0
H26 C14 C13 C12 57.8 179.6
H26 C14 C13 O2 182.7 299.3
H26 C14 C13 H27 298.9 59.9
CG C11 C12 C13 302.9 62.1
C12 C13 C14 H25 177.8 298.6
C12 C13 C14 H26 57.8 179.6
C14 C13 C12 O2 124.1 119.7
C14 C13 C12 H27 240.2 240.3
O2 C13 C12 H27 116.1 120.6
C12 C13 O2 S 288.2 263.8
C11 C12 C13 H28 240.0 240.2
C11 C12 C13 H29 120.0 119.7
C13 C12 C11 H30 182.9 301.8
C13 C12 C11 H31 62.9 182.5
H28 C12 C13 H29 240.0 239.5
O2 C13 C14 H25 302.6 58.3
O2 C13 C14 H26 182.7 299.3
C14 C13 O2 C12 238.0 241.2
C14 C13 O2 H27 119.5 120.6
C12 C13 O2 H27 241.5 239.4
O2 C13 C12 C11 302.0 176.8
O2 C13 C12 H28 62.0 296.6
O2 C13 C12 H29 182.0 57.1
C13 O2 S OS1 83.6 321.4
C13 O2 S OS2 336.2 75.0
C13 O2 S OS3 214.4 188.5
H27 C13 C14 H25 58.9 178.9
H27 C13 C14 H26 298.9 59.9
C14 C13 H27 C12 118.3 118.8
C14 C13 H27 O2 239.5 239.4
C12 C13 H27 O2 121.3 120.6
H27 C13 C12 C11 185.9 56.2
H27 C13 C12 H28 305.9 176.0
H27 C13 C12 H29 65.9 296.5
H27 C13 O2 S 46.8 24.4
C12 C11 CG HG2 162.0 72.2
CG C11 C12 H30 120.0 120.4
CG C11 C12 H31 240.0 239.7
C11 C12 C13 O2 302.0 176.8
C11 C12 C13 H27 185.9 56.2
C13 C12 C11 H28 120.0 119.8
C13 C12 C11 H29 240.0 240.3
H28 C12 C11 H29 120.0 120.5
H30 C11 C12 H31 120.0 119.3
H28 C12 C13 O2 62.0 296.6
H28 C12 C13 H27 305.9 176.0
C13 C12 H28 C11 240.9 240.9
C13 C12 H28 H29 120.4 120.5
C11 C12 H28 H29 239.6 239.6
H28 C12 C11 H30 62.9 182.0
H28 C12 C11 H31 302.9 62.7
H29 C12 C13 O2 182.0 57.1
H29 C12 C13 H27 65.9 296.5
C13 C12 H29 C11 119.1 119.1
C13 C12 H29 H28 239.6 239.5
C11 C12 H29 H28 120.4 120.4
H29 C12 C11 H30 302.9 61.5
H29 C12 C11 H31 182.9 302.2
H30 C11 CG HG2 282.0 192.6
CG C11 H30 C12 237.1 238.6
CG C11 H30 H31 118.6 119.3
H30 C11 C12 H28 62.9 182.0
H30 C11 C12 H29 302.9 61.5
C12 C11 H30 H31 241.5 240.6
H31 C11 CG HG2 42.0 311.8
CG C11 H31 C12 122.9 121.4
CG C11 H31 H30 241.4 240.7
H31 C11 C12 H28 302.9 62.7
H31 C11 C12 H29 182.9 302.2
C12 C11 H31 H30 118.5 119.3
S O2 C13 H27 46.8 24.4
OS1 S O2 OS2 107.4 246.4
OS1 S O2 OS3 229.2 132.9
OS2 S O2 OS3 121.8 246.5
O2 S OS2 H32 109.7 180.1
O2 S OS1 OS2 244.8 114.1
O2 S OS1 OS3 123.2 237.0
OS2 S OS1 OS3 238.4 122.9
OS1 S OS2 H32 360.0 293.6
O2 S OS2 OS1 109.7 246.4
O2 S OS2 OS3 238.9 113.5
OS1 S OS2 OS3 129.2 227.1
O2 S OS3 OS1 239.2 123.0
O2 S OS3 OS2 122.3 245.9
OS1 S OS3 OS2 243.1 122.9
OS3 S OS2 H32 230.8 66.5
H32 OS2 S OS3 230.8 66.5
O C CA HA 204.4 220.2
CA C O OXT   180.0
O C OXT HXT   360.0
CD N H CA 239.1 243.6
H N CD CG 144.4 79.4
H N CD C14 24.9 316.2
H N CD HD2 266.4 195.7
H N CA CB 232.9 264.7
H N CA C 355.6 24.1
H N CA HA 113.3 145.4
OXT C CA HA   40.2
CA C OXT O   180.0