PDB Chemical Component XOP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XOP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C1 1.393 1.382
C1 C6 1.364 1.382
C1 P 1.727 1.815
C3 C2 1.411 1.382
C2 H2 1.080 1.080
C3 C4 1.360 1.382
C3 H3 1.080 1.080
C4 C5 1.363 1.382
C4 H4 1.080 1.080
C5 C6 1.383 1.382
C5 H5 1.079 1.080
C6 H6 1.080 1.080
C13 C7 1.570 1.532
O2 C7 1.486 1.429
C8 C7 1.543 1.532
C7 H7 1.100 1.090
C9 C8 1.520 1.537
C8 H8 1.100 1.090
C8 H8A 1.100 1.090
C10 C9 1.541 1.546
N C9 1.505 1.487
C9 H9 1.100 1.090
C14 N 1.527 1.469
C12 N 1.492 1.488
P O1 1.451 1.481
O3 HO3   0.967
O2 P 1.540 1.610
O3 P   1.610
C11 C10 1.575 1.543
C10 H10 1.100 1.089
C10 H10A 1.100 1.090
C11 C12 1.540 1.570
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C12 C13 1.554 1.536
C12 H12 1.100 1.090
C13 H13 1.100 1.090
C13 H13A 1.100 1.090
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C14 H14B 1.100 1.090

Bond Angles for XOP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 113.6 120.0
C2 C1 P 125.8 120.0
C6 C1 P 120.6 120.0
C1 C6 C5 125.3 120.0
C1 C6 H6 117.4 120.0
C1 P O1 114.0 109.4
C1 P O2 104.9 109.5
C1 P O3   109.5
C3 C2 H2 119.1 120.0
C4 C3 H3 119.1 120.0
C3 C4 C5 117.0 120.0
C3 C4 H4 121.5 120.0
C5 C4 H4 121.5 120.0
C4 C5 C6 120.5 120.0
C4 C5 H5 119.8 120.0
C6 C5 H5 119.8 120.0
C5 C6 H6 117.4 120.0
C13 C7 H7 114.9 109.4
O2 C7 H7 114.5 109.4
C8 C7 H7 101.7 109.4
C9 C8 H8 108.0 109.6
C9 C8 H8A 107.0 109.6
H8 C8 H8A 113.0 109.6
C10 C9 H9 111.2 112.2
N C9 H9 119.2 112.2
P O3 HO3   114.0
O2 P O3   109.5
C11 C10 H10 110.3 110.4
C11 C10 H10A 110.8 110.4
H10 C10 H10A 107.7 110.3
C12 C11 H11 111.4 110.3
C12 C11 H11A 112.7 110.7
C11 C12 C13 107.5 107.6
C11 C12 H12 113.0 112.2
H11 C11 H11A 105.1 110.4
C13 C12 H12 111.4 112.7
C12 C13 H13 107.6 109.6
C12 C13 H13A 106.3 109.6
H13 C13 H13A 114.1 109.7
H14 C14 H14A 109.5 109.5
H14 C14 H14B 109.5 109.5
H14A C14 H14B 109.5 109.4

Torsion Angles for XOP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 P 180.1 180.3
C2 C1 C6 C5 0.3 360.0
C2 C1 C6 H6 180.3 179.7
C2 C1 P O1 153.5 245.3
C2 C1 P O2 29.5 5.3
C2 C1 P O3   125.3
C2 C1 C6 P 179.9 179.7
C6 C1 P O1 333.4 65.0
C6 C1 P O2 209.3 185.0
C6 C1 P O3   305.0
C4 C5 C6 C1 0.9 360.0
C1 C6 C5 H5 180.9 180.0
C5 C6 C1 H6 180.0 180.3
C2 C1 P C6 180.1 180.3
P C1 C6 C5 180.4 180.3
P C1 C6 H6 0.4 360.0
C1 P O3 HO3   300.0
O2 P C1 O3   240.0
C3 C2 C1 C6 0.2 0.1
C3 C2 C1 P 180.1 179.8
H2 C2 C1 C6 180.2 180.0
H2 C2 C1 P 0.1 359.7
C4 C3 C2 H2 178.0 180.0
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 C6 357.4 0.0
C3 C4 C5 H5 177.4 180.0
H3 C3 C2 H2 358.0 360.0
H3 C3 C4 C5 183.1 180.0
H3 C3 C4 H4 3.1 0.0
C1 C6 C5 C4 0.9 360.0
C5 C4 C3 H3 183.1 180.0
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 H6 180.9 180.3
H4 C4 C3 H3 3.1 0.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 177.5 180.1
H4 C4 C5 H5 357.4 0.0
C5 C6 C1 P 180.4 180.3
C1 C6 C5 H6 180.0 179.7
C6 C5 C4 H4 177.5 180.1
C4 C5 C6 H5 180.0 180.0
H5 C5 C4 H4 357.4 0.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 H6 0.9 0.3
H6 C6 C1 P 0.4 360.0
C1 C6 H6 C5 180.0 180.3
H6 C6 C5 H5 0.9 0.3
O2 C7 C13 H7 123.0 119.9
C8 C7 C13 H7 243.9 240.0
C1 P O2 C7 201.9 185.0
C13 C7 O2 H7 236.7 240.1
C8 C7 O2 H7 116.1 119.9
C13 C7 C8 H7 123.7 120.0
O2 C7 C8 H7 236.5 240.1
C9 C8 C7 H7 200.3 185.9
H8 C8 C9 H8A 122.0 120.3
H8 C8 C7 H7 320.2 305.8
C9 C8 H8 H8A 241.8 239.6
H8A C8 C7 H7 82.2 66.0
C9 C8 H8A H8 118.8 120.3
C10 C9 C8 H8 187.2 191.9
C10 C9 C8 H8A 65.2 71.6
N C9 C10 H9 126.9 122.0
N C9 C8 H8 296.8 304.3
N C9 C8 H8A 174.8 184.0
C10 C9 N H9 238.7 238.0
H9 C9 C8 H8 64.3 67.9
H9 C9 C8 H8A 302.3 307.6
C14 N C9 H9 44.9 44.8
C12 N C9 H9 164.6 163.9
C1 P O1 O2 240.4 120.0
C1 P O1 O3   240.0
O2 P O3 HO3   60.0
C1 P O2 O1 124.7 240.0
C1 P O2 O3   120.0
P O2 C7 H7 356.5 0.0
C1 P O3 O1   120.0
C1 P O3 O2   240.0
C11 C10 C9 H9 204.1 212.5
H10 C10 C11 H10A 119.1 122.3
H10 C10 C9 H9 324.1 331.4
C11 C10 H10 H10A 239.0 237.7
H10A C10 C9 H9 83.2 93.6
C11 C10 H10A H10 120.7 122.3
C12 C11 C10 H10 245.7 241.4
C12 C11 C10 H10A 126.6 119.1
H11 C11 C12 H11A 117.9 122.5
C13 C12 C11 H12 123.3 124.5
C11 C12 C13 H13 300.2 287.8
C11 C12 C13 H13A 177.6 167.4
H11 C11 C10 H10 5.7 360.0
H11 C11 C10 H10A 246.6 237.7
C12 C11 H11 H11A 237.6 237.4
H11 C11 C12 C13 148.5 152.7
H11 C11 C12 H12 25.2 28.1
H11A C11 C10 H10 123.6 122.3
H11A C11 C10 H10A 4.5 0.0
C12 C11 H11A H11 121.6 122.4
H11A C11 C12 C13 30.6 30.2
H11A C11 C12 H12 267.3 265.7
C12 C13 C7 H7 149.2 174.1
C13 C12 C11 H11 148.5 152.7
C13 C12 C11 H11A 30.6 30.2
C11 C12 C13 H12 235.7 235.8
H13 C13 C12 H13A 122.6 120.4
H12 C12 C11 H11 25.2 28.1
H12 C12 C11 H11A 267.3 265.7
C11 C12 H12 C13 121.1 121.7
H12 C12 C13 H13 64.5 52.1
H12 C12 C13 H13A 301.8 291.7
H13 C13 C7 H7 269.2 293.7
H13 C13 C12 H12 64.5 52.1
C12 C13 H13 H13A 242.4 239.7
H13A C13 C7 H7 31.7 54.1
H13A C13 C12 H12 301.8 291.7
C12 C13 H13A H13 118.4 120.4
H14A C14 H14 H14B 120.0 120.0
H14 C14 H14A H14B 240.0 240.0
H14 C14 H14B H14A 120.0 120.0