PDB Chemical Component XOC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XOC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.393	1.388
C1	C6	1.386	1.391
C1	S1	1.762	1.760
C2	C3	1.389	1.383
C3	C4	1.395	1.382
C4	C5	1.393	1.382
C5	C6	1.395	1.391
C6	N1	1.420	1.393
C7	C8	1.398	1.391
C7	C12	1.392	1.390
C7	N1	1.421	1.393
C8	C9	1.396	1.382
C9	C10	1.389	1.382
C10	C11	1.393	1.382
C11	C12	1.391	1.389
C12	S1	1.764	1.761
C13	C14	1.527	1.507
C13	N2	1.346	1.347
C13	O2	1.234	1.213
C14	N3	1.467	1.468
C15	C16	1.512	1.530
C15	N3	1.483	1.469
C16	C17	1.482	1.531
C17	C18	1.523	1.531
C18	C19	1.507	1.530
C19	N3	1.456	1.468
N1	N2	1.422	1.401
C2	H2	1.080	1.080
C3	H3	1.080	1.080
C4	H4	1.080	1.080
C5	H5	1.080	1.080
C8	H8	1.080	1.079
C9	H9	1.080	1.080
C10	H10	1.080	1.080
C11	H11	1.080	1.081
C14	H141	1.100	1.090
C14	H142	1.100	1.090
N2	HA	1.000	0.970
C15	H151	1.100	1.091
C15	H152	1.100	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.091
C17	H171	1.100	1.090
C17	H172	1.100	1.090
C18	H181	1.100	1.090
C18	H182	1.100	1.090
C19	H191	1.100	1.090
C19	H192	1.099	1.090

Bond Angles for XOC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	122.3	120.0
C2	C1	S1	122.2	119.3
C1	C2	C3	118.5	120.2
C1	C2	H2	120.7	119.9
C6	C1	S1	115.5	120.7
C1	C6	C5	119.2	119.4
C1	C6	N1	116.2	121.8
C1	S1	C12	94.8	103.5
C2	C3	C4	119.6	120.0
C3	C2	H2	120.8	119.9
C2	C3	H3	120.2	120.1
C3	C4	C5	121.5	120.2
C4	C3	H3	120.2	120.0
C3	C4	H4	119.2	120.0
C4	C5	C6	118.9	120.3
C5	C4	H4	119.2	119.9
C4	C5	H5	120.6	119.8
C5	C6	N1	124.6	118.8
C6	C5	H5	120.6	119.8
C6	N1	C7	110.6	124.5
C6	N1	N2	122.0	117.7
C8	C7	C12	119.3	119.4
C8	C7	N1	125.4	118.7
C7	C8	C9	118.9	120.3
C7	C8	H8	120.5	119.9
C12	C7	N1	115.3	121.9
C7	C12	C11	121.9	120.0
C7	C12	S1	116.1	120.7
C7	N1	N2	125.9	117.8
C8	C9	C10	121.2	120.2
C9	C8	H8	120.5	119.9
C8	C9	H9	119.4	119.9
C9	C10	C11	120.2	119.9
C10	C9	H9	119.4	119.9
C9	C10	H10	119.9	120.0
C10	C11	C12	118.5	120.2
C11	C10	H10	119.9	120.0
C10	C11	H11	120.8	119.9
C11	C12	S1	122.0	119.3
C12	C11	H11	120.8	119.9
C14	C13	N2	113.6	120.1
C14	C13	O2	120.9	120.0
C13	C14	N3	113.0	109.5
C13	C14	H141	108.6	109.5
C13	C14	H142	108.6	109.4
N2	C13	O2	125.5	120.0
C13	N2	N1	122.4	120.0
C13	N2	HA	118.8	120.0
C14	N3	C15	108.8	111.0
C14	N3	C19	112.4	111.0
N3	C14	H141	108.6	109.5
N3	C14	H142	108.6	109.5
C16	C15	N3	112.5	109.5
C15	C16	C17	107.9	109.3
C16	C15	H151	108.7	109.5
C16	C15	H152	108.7	109.5
C15	C16	H161	109.8	109.5
C15	C16	H162	109.9	109.4
C15	N3	C19	107.5	111.2
N3	C15	H151	108.7	109.4
N3	C15	H152	108.7	109.4
C16	C17	C18	107.1	109.2
C17	C16	H161	109.9	109.5
C17	C16	H162	109.9	109.5
C16	C17	H171	110.0	109.5
C16	C17	H172	110.1	109.5
C17	C18	C19	111.8	109.3
C18	C17	H171	110.1	109.5
C18	C17	H172	110.0	109.5
C17	C18	H181	108.9	109.4
C17	C18	H182	108.9	109.5
C18	C19	N3	108.2	109.5
C19	C18	H181	108.9	109.5
C19	C18	H182	108.9	109.5
C18	C19	H191	109.8	109.4
C18	C19	H192	109.8	109.4
N3	C19	H191	109.8	109.5
N3	C19	H192	109.8	109.5
N1	N2	HA	118.8	120.0
H141	C14	H142	109.4	109.4
H151	C15	H152	109.5	109.5
H161	C16	H162	109.5	109.6
H171	C17	H172	109.5	109.6
H181	C18	H182	109.4	109.6
H191	C19	H192	109.5	109.4

Torsion Angles for XOC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	S1	178.9	180.2
C2	C1	C6	C5	359.7	0.1
C2	C1	C6	N1	181.5	180.4
C2	C1	S1	C12	131.8	197.6
C1	C2	C3	C4	0.5	0.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	H3	180.4	180.0
C2	C1	C6	S1	181.1	179.8
C6	C1	C2	C3	359.8	359.9
C6	C1	C2	H2	179.8	179.9
C6	C1	S1	C12	312.9	17.4
C4	C5	C6	C1	0.6	359.8
C5	C6	C1	N1	178.2	179.8
C1	C6	C5	H5	180.5	180.0
C1	C6	N1	C7	59.3	335.2
C1	C6	N1	N2	225.8	155.2
C2	C1	S1	C6	178.9	180.2
S1	C1	C2	C3	180.9	179.7
S1	C1	C2	H2	0.9	359.7
S1	C1	C6	C5	178.6	180.4
S1	C1	C6	N1	0.4	0.6
C7	C12	S1	C1	47.4	342.7
C11	C12	S1	C1	228.5	162.5
C3	C2	C1	C6	359.8	359.9
C3	C2	C1	S1	180.9	179.7
C1	C2	C3	H2	180.0	180.0
C2	C3	C4	C5	359.8	360.0
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	H4	179.8	180.0
C4	C3	C2	H2	180.4	180.0
C2	C3	C4	H3	180.0	179.9
C3	C4	C5	C6	359.7	0.1
C5	C4	C3	H4	180.0	179.9
C3	C4	C5	H5	179.7	180.0
C1	C6	C5	C4	0.6	359.8
C5	C4	C3	H3	179.8	180.0
C3	C4	C5	H4	180.0	180.1
C4	C5	C6	N1	178.6	179.6
C6	C5	C4	H5	180.0	180.1
C5	C6	C1	S1	178.6	180.4
C1	C6	C5	N1	182.0	180.2
C6	C5	C4	H4	179.7	180.0
C4	C5	C6	H5	180.0	179.9
C5	C6	N1	C7	241.2	155.4
C5	C6	N1	N2	47.7	335.4
N1	C6	C1	S1	0.4	0.6
C1	C6	N1	C5	178.1	179.8
N1	C6	C5	H5	358.6	359.7
C8	C7	N1	C6	119.1	204.7
C12	C7	N1	C6	301.2	24.9
C7	N1	C6	N2	193.6	180.0
C13	N2	N1	C6	225.5	105.0
C6	N1	N2	HA	45.5	284.9
C6	N1	C7	C8	119.1	204.7
C12	C7	C8	N1	177.8	179.8
C8	C7	C12	C11	0.2	359.7
C8	C7	C12	S1	181.3	179.5
C8	C7	N1	N2	313.3	24.6
C7	C8	C9	C10	0.9	360.0
C9	C8	C7	H8	180.0	180.0
C7	C8	C9	H9	180.8	180.0
C1	S1	C12	C7	47.4	342.7
C6	N1	C7	C12	301.2	24.9
C8	C7	C12	N1	182.0	180.2
C12	C7	C8	C9	359.2	0.2
C12	C7	C8	H8	179.2	180.3
C12	C7	N1	N2	135.4	204.8
C10	C11	C12	C7	0.2	0.2
C11	C12	C7	S1	179.0	180.2
C7	C12	C11	H11	180.3	180.2
C6	N1	C7	N2	165.8	180.0
C8	C7	N1	C12	177.9	179.8
N1	C7	C8	C9	181.4	180.4
N1	C7	C8	H8	1.4	0.5
N1	C7	C12	C11	178.2	179.5
N1	C7	C12	S1	359.3	359.3
C13	N2	N1	C7	29.8	285.0
C7	N1	N2	HA	209.8	105.0
C9	C8	C7	C12	359.2	0.2
C9	C8	C7	N1	181.4	180.4
C7	C8	C9	H8	180.0	180.0
C8	C9	C10	C11	359.6	359.9
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	H10	179.6	179.9
C10	C9	C8	H8	180.9	179.9
C8	C9	C10	H9	180.0	180.0
C9	C10	C11	C12	359.8	0.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	H11	179.8	180.0
C7	C12	C11	C10	0.2	0.2
C11	C10	C9	H9	179.6	179.9
C9	C10	C11	H10	180.0	180.0
C10	C11	C12	S1	179.2	180.4
C12	C11	C10	H11	180.0	180.1
C1	S1	C12	C11	228.5	162.5
C11	C12	C7	N1	178.2	179.5
C7	C12	C11	S1	181.1	179.8
C12	C11	C10	H10	179.8	180.0
C10	C11	C12	H11	180.0	179.9
S1	C12	C7	N1	359.3	359.3
C7	C12	S1	C11	179.0	180.2
S1	C12	C11	H11	359.2	0.5
N2	C13	C14	O2	181.1	180.0
C14	C13	N2	N1	219.3	180.0
C14	C13	N2	HA	39.3	0.0
C13	C14	N3	C15	78.6	170.0
C13	C14	N3	C19	197.5	294.2
N3	C14	C13	H141	239.5	239.9
N3	C14	C13	H142	120.5	120.0
H141	C14	C13	H142	241.1	240.1
C6	N1	N2	C13	225.5	105.0
C7	N1	N2	C13	29.8	285.0
C14	C13	N2	O2	178.8	180.0
N2	C13	C14	N3	127.0	180.0
N2	C13	C14	H141	247.6	300.0
N2	C13	C14	H142	6.5	60.0
N1	N2	C13	HA	180.0	179.9
C14	C13	O2	N2	181.3	180.0
O2	C13	C14	N3	305.9	360.0
O2	C13	C14	H141	66.4	120.0
O2	C13	C14	H142	185.4	240.0
O2	C13	N2	N1	40.5	360.0
O2	C13	N2	HA	220.5	180.0
N3	C14	C13	N2	127.0	180.0
N3	C14	C13	O2	305.9	360.0
C13	C14	N3	H141	120.5	120.1
C13	C14	N3	H142	239.5	240.0
C16	C15	N3	C14	170.4	185.8
C15	N3	C14	C19	241.0	235.8
C14	N3	C15	H151	50.0	65.8
C14	N3	C15	H152	290.9	305.9
C18	C19	N3	C14	171.3	174.1
C14	N3	C19	H191	51.5	54.1
C14	N3	C19	H192	291.2	294.2
H141	C14	N3	H142	118.9	120.0
C14	N3	C15	C16	170.4	185.8
C16	C15	N3	C19	48.4	61.7
N3	C15	C16	H151	239.6	240.0
N3	C15	C16	H152	120.5	120.0
C15	C16	C17	C18	293.9	57.7
C17	C16	C15	H161	240.2	240.0
C17	C16	C15	H162	119.8	119.9
C15	C16	C17	H171	53.6	177.6
C15	C16	C17	H172	174.3	297.8
H151	C15	C16	H152	240.9	240.0
H161	C16	C15	H162	239.6	239.9
C14	N3	C15	C19	122.0	124.1
C15	N3	C14	H141	318.0	49.9
C15	N3	C14	H142	199.1	290.0
N3	C15	C16	C17	18.9	300.8
C16	C15	N3	H151	120.4	120.0
C16	C15	N3	H152	239.5	240.0
N3	C15	C16	H161	138.7	60.8
N3	C15	C16	H162	259.1	180.9
C18	C19	N3	C15	291.1	298.3
C15	N3	C19	H191	171.3	178.2
C15	N3	C19	H192	50.9	58.3
H151	C15	N3	H152	119.1	119.9
C17	C16	C15	N3	18.9	300.8
C17	C16	C15	H151	139.3	60.8
C17	C16	C15	H152	258.4	180.8
C15	C16	C17	H161	119.7	120.0
C15	C16	C17	H162	240.2	240.1
C16	C17	C18	C19	46.0	302.3
C18	C17	C16	H171	240.3	240.1
C18	C17	C16	H172	119.6	119.9
C16	C17	C18	H181	166.4	62.3
C16	C17	C18	H182	285.7	182.4
H161	C16	C17	H162	120.5	120.2
H171	C17	C16	H172	239.3	239.8
C18	C17	C16	H161	174.2	297.7
C18	C17	C16	H162	53.7	177.6
C16	C17	C18	H171	119.6	119.9
C16	C17	C18	H172	240.4	240.1
C17	C18	C19	N3	20.5	59.2
C19	C18	C17	H181	239.6	240.1
C19	C18	C17	H182	120.3	120.0
C17	C18	C19	H191	140.3	179.2
C17	C18	C19	H192	260.7	299.2
H171	C17	C18	H172	120.7	120.2
H181	C18	C17	H182	240.7	239.9
C14	N3	C19	C18	171.3	174.1
C15	N3	C19	C18	291.1	298.3
C19	C18	C17	H171	286.4	182.4
C19	C18	C17	H172	165.6	62.3
C17	C18	C19	H181	120.4	119.9
C17	C18	C19	H182	239.6	240.1
N3	C19	C18	H191	240.2	239.9
N3	C19	C18	H192	119.8	120.0
H181	C18	C19	H182	119.3	120.2
H191	C19	C18	H192	239.6	240.1
C14	N3	C19	C15	240.2	235.9
C19	N3	C14	H141	77.0	174.2
C19	N3	C14	H142	318.1	54.2
C19	N3	C15	H151	288.0	301.7
C19	N3	C15	H152	168.9	181.8
N3	C19	C18	H181	260.1	299.3
N3	C19	C18	H182	140.8	179.1
C18	C19	N3	H191	119.8	120.0
C18	C19	N3	H192	240.2	240.0
H191	C19	N3	H192	120.4	120.0
C6	N1	N2	C7	195.7	180.0
N1	N2	C13	O2	40.5	360.0
C13	N2	N1	HA	180.0	180.1
H2	C2	C1	C6	179.8	179.9
H2	C2	C1	S1	0.9	359.7
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	180.4	180.0
H2	C2	C3	H3	0.4	359.9
C2	C3	H3	C4	180.0	180.1
H3	C3	C2	H2	0.4	359.9
H3	C3	C4	C5	179.8	180.0
H3	C3	C4	H4	359.8	0.1
C3	C4	H4	C5	180.0	179.9
H4	C4	C3	H3	359.8	0.1
H4	C4	C5	C6	179.7	180.0
H4	C4	C5	H5	359.7	359.9
C4	C5	H5	C6	180.0	180.1
H5	C5	C4	H4	359.7	359.9
H5	C5	C6	N1	358.6	359.7
H8	C8	C7	C12	179.2	180.3
H8	C8	C7	N1	1.4	0.5
C7	C8	H8	C9	180.0	180.0
H8	C8	C9	C10	180.9	179.9
H8	C8	C9	H9	0.8	360.0
C8	C9	H9	C10	180.0	180.0
H9	C9	C8	H8	0.8	360.0
H9	C9	C10	C11	179.6	179.9
H9	C9	C10	H10	359.6	359.9
C9	C10	H10	C11	180.0	180.0
H10	C10	C9	H9	359.6	359.9
H10	C10	C11	C12	179.8	180.0
H10	C10	C11	H11	359.8	360.0
C10	C11	H11	C12	180.0	180.1
H11	C11	C10	H10	359.8	360.0
H11	C11	C12	S1	359.2	0.5
H141	C14	C13	N2	247.6	300.0
H141	C14	C13	O2	66.4	120.0
C13	C14	H141	N3	236.8	239.9
C13	C14	H141	H142	118.4	119.9
H141	C14	N3	C15	318.0	49.9
H141	C14	N3	C19	77.0	174.2
N3	C14	H141	H142	241.6	240.0
H142	C14	C13	N2	6.5	60.0
H142	C14	C13	O2	185.4	240.0
C13	C14	H142	N3	123.2	120.0
C13	C14	H142	H141	241.6	240.0
H142	C14	N3	C15	199.1	290.0
H142	C14	N3	C19	318.1	54.2
N3	C14	H142	H141	118.4	120.0
HA	N2	C13	O2	220.5	180.0
C13	N2	HA	N1	180.0	179.9
C16	C15	H151	N3	237.2	240.0
H151	C15	C16	C17	139.3	60.8
C16	C15	H151	H152	118.6	120.0
H151	C15	C16	H161	259.1	180.8
H151	C15	C16	H162	19.5	300.9
H151	C15	N3	C19	288.0	301.7
N3	C15	H151	H152	241.4	240.1
C16	C15	H152	N3	122.8	120.1
H152	C15	C16	C17	258.4	180.8
C16	C15	H152	H151	241.4	240.0
H152	C15	C16	H161	18.2	300.8
H152	C15	C16	H162	138.6	60.9
H152	C15	N3	C19	168.9	181.8
N3	C15	H152	H151	118.6	119.9
H161	C16	C15	N3	138.7	60.8
C15	C16	H161	C17	241.4	240.2
H161	C16	C15	H151	259.1	180.8
H161	C16	C15	H152	18.2	300.8
C15	C16	H161	H162	120.7	120.1
H161	C16	C17	C18	174.2	297.7
C17	C16	H161	H162	239.2	239.9
H161	C16	C17	H171	293.9	57.6
H161	C16	C17	H172	54.6	177.8
H162	C16	C15	N3	259.1	180.9
C15	C16	H162	C17	118.6	119.8
H162	C16	C15	H151	19.5	300.9
H162	C16	C15	H152	138.6	60.9
C15	C16	H162	H161	239.3	239.9
H162	C16	C17	C18	53.7	177.6
C17	C16	H162	H161	120.8	120.1
H162	C16	C17	H171	173.4	297.4
H162	C16	C17	H172	294.1	57.6
C16	C17	H171	C18	242.2	240.3
H171	C17	C16	H161	293.9	57.6
H171	C17	C16	H162	173.4	297.4
C16	C17	H171	H172	121.1	120.2
H171	C17	C18	C19	286.4	182.4
C18	C17	H171	H172	238.9	239.8
H171	C17	C18	H181	46.8	302.4
H171	C17	C18	H182	166.0	62.5
C16	C17	H172	C18	117.8	119.7
H172	C17	C16	H161	54.6	177.8
H172	C17	C16	H162	294.1	57.6
C16	C17	H172	H171	238.9	239.8
H172	C17	C18	C19	165.6	62.3
C18	C17	H172	H171	121.1	120.2
H172	C17	C18	H181	286.0	182.2
H172	C17	C18	H182	45.3	302.3
C17	C18	H181	C19	237.9	240.2
H181	C18	C17	H171	46.8	302.4
H181	C18	C17	H172	286.0	182.2
C17	C18	H181	H182	119.0	120.1
H181	C18	C19	N3	260.1	299.3
C19	C18	H181	H182	241.1	239.8
H181	C18	C19	H191	19.9	59.4
H181	C18	C19	H192	140.3	179.3
C17	C18	H182	C19	122.1	119.8
H182	C18	C17	H171	166.0	62.5
H182	C18	C17	H172	45.3	302.3
C17	C18	H182	H181	241.0	240.0
H182	C18	C19	N3	140.8	179.1
C19	C18	H182	H181	118.9	120.2
H182	C18	C19	H191	260.6	299.2
H182	C18	C19	H192	21.0	59.1
C18	C19	H191	N3	241.1	239.9
H191	C19	C18	H181	19.9	59.4
H191	C19	C18	H182	260.6	299.2
C18	C19	H191	H192	120.6	119.9
N3	C19	H191	H192	239.5	240.0
C18	C19	H192	N3	118.9	120.1
H192	C19	C18	H181	140.3	179.3
H192	C19	C18	H182	21.0	59.1
C18	C19	H192	H191	239.4	240.1
N3	C19	H192	H191	120.5	120.0