PDB Chemical Component XNL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XNL

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAC CAD 1.503 1.530
CAC CAB 1.498 1.530
CAD CAE 1.497 1.530
CAB CAA 1.497 1.530
CAE CAF 1.507 1.530
CAA CAF 1.507 1.530
CAF CAG 1.558 1.530
CAG OAV 1.416 1.429
CAG CAH 1.532 1.531
CAH NAI 1.465 1.464
CAU CAT 1.374 1.378
CAU CAM 1.311 1.392
NAI CAM 1.311 1.384
NAI CAJ 1.309 1.382
CAT CAS 1.368 1.387
CAM CAL 1.310 1.404
CAJ CAN 1.307 1.390
CAJ CAK 1.305 1.405
CAN NAO 1.369 1.317
CAS CAR 1.367 1.378
CAL CAK 1.311 1.471
CAL CAR 1.311 1.394
CAK CAQ 1.316 1.394
NAO CAP 1.344 1.321
CAQ CAP 1.363 1.379
CAA H1 1.100 1.090
CAA H2 1.099 1.090
CAB H3 1.100 1.090
CAB H4 1.100 1.090
CAC H5 1.100 1.091
CAC H6 1.099 1.090
CAD H7 1.100 1.090
CAD H8 1.100 1.090
CAE H9 1.100 1.090
CAE H10 1.100 1.090
CAF H11 1.100 1.090
CAG H12 1.100 1.090
OAV H13 0.950 0.967
CAH H14 1.100 1.090
CAH H15 1.101 1.090
CAU H16 1.080 1.079
CAT H17 1.080 1.081
CAS H18 1.080 1.080
CAR H19 1.079 1.080
CAN H20 1.080 1.081
CAP H21 1.080 1.080
CAQ H22 1.080 1.080

Bond Angles for XNL

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAC CAD CAE 109.9 109.5
CAD CAC H5 109.3 109.5
CAD CAC H6 109.3 109.5
CAC CAD H7 109.4 109.5
CAC CAD H8 109.4 109.5
CAC CAB H3 109.7 109.5
CAC CAB H4 109.7 109.5
CAD CAE CAF 109.0 109.5
CAE CAD H7 109.4 109.4
CAE CAD H8 109.4 109.5
CAD CAE H9 109.6 109.5
CAD CAE H10 109.6 109.4
CAB CAA CAF 108.0 109.5
CAB CAA H1 109.8 109.4
CAB CAA H2 109.8 109.5
CAA CAF CAE 106.1 109.5
CAE CAF CAG 112.3 109.4
CAF CAE H9 109.6 109.5
CAF CAE H10 109.6 109.5
CAE CAF H11 108.1 109.4
CAA CAF CAG 114.7 109.5
CAF CAA H1 109.8 109.5
CAF CAA H2 109.8 109.5
CAA CAF H11 108.0 109.5
CAF CAG OAV 111.4 109.5
CAF CAG CAH 113.3 109.5
CAG CAF H11 107.5 109.5
CAF CAG H12 107.2 109.5
OAV CAG CAH 108.3 109.4
OAV CAG H12 109.0 109.4
CAG OAV H13 109.5 114.0
CAG CAH NAI 114.4 109.5
CAH CAG H12 107.5 109.5
CAG CAH H14 108.2 109.4
CAG CAH H15 108.2 109.4
CAH NAI CAM 127.5 124.9
CAH NAI CAJ 124.7 124.9
NAI CAH H14 108.2 109.5
NAI CAH H15 108.2 109.5
CAU CAT CAS 118.9 120.6
CAT CAU H16 120.0 120.0
CAU CAT H17 120.5 119.7
CAU CAM CAL 120.9 119.3
CAM NAI CAJ 107.8 110.3
NAI CAM CAL 107.8 108.4
NAI CAJ CAN 131.8 133.2
NAI CAJ CAK 108.4 108.3
CAT CAS CAR 118.3 120.2
CAS CAT H17 120.6 119.7
CAT CAS H18 120.8 119.9
CAM CAL CAK 108.1 106.4
CAM CAL CAR 122.1 120.0
CAJ CAN NAO 120.3 120.5
CAJ CAN H20 119.8 119.7
CAJ CAK CAQ 121.7 118.8
CAN NAO CAP 120.4 122.5
NAO CAN H20 119.8 119.8
CAR CAS H18 120.9 119.9
CAS CAR H19 120.0 120.1
CAL CAK CAQ 130.5 134.6
CAL CAR H19 120.1 120.1
CAK CAQ CAP 121.3 118.7
CAK CAQ H22 119.4 120.7
NAO CAP H21 121.8 119.5
CAQ CAP H21 121.7 119.5
H1 CAA H2 109.5 109.4
H3 CAB H4 109.5 109.4
H5 CAC H6 109.5 109.4
H7 CAD H8 109.5 109.4
H9 CAE H10 109.5 109.4
H14 CAH H15 109.5 109.5

Torsion Angles for XNL

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAD CAC CAB H3 178.6 300.0
CAD CAC CAB H4 298.9 180.0
CAC CAD CAE CAF 59.9 60.0
CAE CAD CAC H7 239.9 240.0
CAE CAD CAC H8 120.0 120.1
CAC CAD CAE H9 179.8 180.0
CAC CAD CAE H10 300.0 299.9
H5 CAC CAD H6 240.3 120.0
H7 CAD CAC H8 240.1 240.0
CAC CAB CAA CAF 295.8 300.0
CAC CAB CAA H1 55.6 60.0
CAC CAB CAA H2 176.0 180.0
H3 CAB CAC H4 239.7 120.0
CAE CAD CAC H5 63.4 180.0
CAE CAD CAC H6 183.1 60.1
CAC CAD CAE H7 120.0 120.0
CAC CAD CAE H8 240.0 239.9
CAA CAF CAE CAD 295.6 300.0
CAD CAE CAF CAG 169.6 180.0
CAF CAE CAD H9 240.1 239.9
CAF CAE CAD H10 119.9 120.0
CAD CAE CAF H11 51.3 60.0
H7 CAD CAE H8 119.9 120.0
H9 CAE CAD H10 239.8 240.1
CAB CAA CAF CAE 66.6 60.0
CAB CAA CAF CAG 191.1 180.0
CAF CAA CAB H1 240.2 240.0
CAF CAA CAB H2 119.8 120.1
CAB CAA CAF H11 310.9 300.0
H1 CAA CAB H2 239.6 240.0
CAF CAE CAD H7 299.9 300.0
CAF CAE CAD H8 180.0 180.0
CAD CAE CAF H9 119.9 120.0
CAD CAE CAF H10 240.1 240.0
CAA CAF CAE CAG 126.0 120.0
CAE CAF CAA H1 306.8 300.0
CAE CAF CAA H2 186.4 180.0
CAA CAF CAE H11 244.3 240.0
CAE CAF CAG OAV 20.9 180.0
CAE CAF CAG CAH 143.3 300.0
CAG CAF CAE H11 118.3 120.0
CAE CAF CAG H12 261.8 60.0
H9 CAE CAF H10 120.2 120.0
CAD CAE CAF CAA 295.6 300.0
CAB CAA CAF H1 119.8 120.0
CAB CAA CAF H2 240.2 239.9
CAE CAF CAA CAG 235.5 240.0
CAA CAF CAE H9 175.7 180.0
CAA CAF CAE H10 55.5 60.0
CAE CAF CAA H11 115.7 120.0
CAA CAF CAG OAV 259.7 60.0
CAA CAF CAG CAH 22.1 180.0
CAG CAF CAA H11 240.2 240.0
CAA CAF CAG H12 140.6 300.0
H1 CAA CAF H2 120.4 120.0
CAA CAF CAG CAE 238.8 240.0
CAG CAF CAE H9 49.7 60.0
CAG CAF CAE H10 289.5 300.0
CAE CAF CAG H11 241.3 240.1
CAG CAF CAA H1 71.3 60.0
CAG CAF CAA H2 310.9 300.0
CAA CAF CAG H11 120.1 120.0
OAV CAG CAF CAH 237.6 240.0
OAV CAG CAF H12 119.2 120.0
CAF CAG OAV H13 180.0 60.0
CAF CAG CAH NAI 156.9 175.0
CAH CAG CAF H12 241.6 240.0
CAF CAG CAH H14 277.6 295.0
CAF CAG CAH H15 36.2 55.0
CAF CAG OAV CAH 125.3 120.0
OAV CAG CAF H11 139.6 300.0
CAF CAG OAV H12 241.9 240.0
OAV CAG CAH NAI 281.1 295.0
CAH CAG OAV H12 116.6 120.0
OAV CAG CAH H14 41.8 55.1
OAV CAG CAH H15 160.4 175.0
CAF CAG CAH OAV 235.9 240.0
CAH CAG CAF H11 262.0 60.0
CAF CAG CAH H12 118.3 120.0
OAV CAG CAH H12 242.4 240.0
CAH CAG OAV H13 54.7 300.0
CAG CAH NAI CAM 284.5 90.0
CAG CAH NAI CAJ 106.5 269.7
NAI CAH CAG H14 239.3 240.0
NAI CAH CAG H15 120.7 120.0
H14 CAH CAG H15 241.4 240.0
NAI CAH CAG H12 38.7 55.0
CAG CAH NAI H14 120.7 120.0
CAG CAH NAI H15 239.3 240.0
CAM NAI CAH CAJ 178.0 180.3
CAH NAI CAM CAL 180.8 180.0
CAH NAI CAJ CAN 358.6 0.0
CAH NAI CAJ CAK 179.1 179.9
H14 CAH NAI H15 118.6 120.1
CAT CAU CAM CAL 0.4 360.0
CAU CAT CAS CAR 359.5 0.0
CAS CAT CAU H17 180.0 180.0
CAU CAT CAS H18 179.5 179.9
CAU CAM NAI CAJ 180.2 180.3
NAI CAM CAU CAL 178.8 179.9
CAU CAM CAL CAK 179.7 179.9
CAU CAM CAL CAR 0.1 360.0
CAH NAI CAM CAJ 181.7 179.8
CAM NAI CAH H14 163.8 330.0
CAM NAI CAH H15 45.2 209.9
CAU CAM NAI CAL 181.1 180.1
CAM NAI CAJ CAN 180.3 179.8
CAM NAI CAJ CAK 0.8 359.7
NAI CAM CAL CAK 0.6 0.0
NAI CAM CAL CAR 181.0 180.0
CAH NAI CAJ CAM 178.3 180.2
CAJ NAI CAH H14 345.8 149.7
CAJ NAI CAH H15 227.2 29.7
CAJ NAI CAM CAL 359.1 0.2
NAI CAJ CAN NAO 181.7 180.0
NAI CAJ CAN H20 1.7 360.0
NAI CAJ CAK CAQ 179.4 180.1
CAS CAT CAU H16 179.8 180.0
CAU CAT CAS H17 180.0 180.0
CAR CAS CAT H18 180.0 180.1
CAT CAS CAR H19 181.0 179.9
CAL CAM NAI CAJ 359.1 0.2
CAM CAL CAK CAQ 180.1 180.0
CAM CAL CAR H19 179.2 180.1
NAI CAJ CAN CAK 180.5 179.9
CAN CAJ CAK CAQ 359.8 0.0
CAJ CAN NAO CAP 357.4 0.0
NAO CAN CAJ H20 180.0 180.0
NAI CAJ CAK CAN 179.6 180.1
CAL CAK CAJ CAQ 180.3 180.2
CAJ CAK CAQ CAP 0.6 359.7
CAJ CAK CAQ H22 180.6 180.2
CAJ CAN NAO H20 180.0 180.0
CAN NAO CAP H21 182.8 179.9
CAR CAS CAT H17 179.5 180.0
CAT CAS CAR H18 180.0 179.9
CAM CAL CAR CAS 359.2 0.0
CAL CAR CAS H19 180.0 180.0
NAI CAJ CAK CAL 359.6 0.3
CAM CAL CAK CAR 180.4 180.1
CAJ CAK CAL CAQ 179.7 179.8
CAK CAL CAR H19 359.7 0.1
CAL CAK CAQ CAP 180.3 179.4
CAL CAK CAQ H22 0.3 359.9
CAM CAL CAR CAK 179.6 179.9
CAL CAR CAS H18 181.0 180.0
CAS CAR CAL H19 180.0 180.0
CAK CAQ CAP H21 178.1 180.2
CAP NAO CAN H20 177.4 180.0
CAK CAQ CAP NAO 358.1 0.5
CAQ CAP NAO H21 180.0 179.7
CAK CAQ CAP H22 180.0 180.5
NAO CAP CAQ H21 180.0 180.3
CAB CAA H1 CAF 241.3 240.0
CAB CAA H1 H2 120.6 120.0
H1 CAA CAF CAE 306.8 300.0
H1 CAA CAF CAG 71.3 60.0
CAF CAA H1 H2 239.3 240.0
H1 CAA CAF H11 191.1 180.0
CAB CAA H2 CAF 118.7 120.1
CAB CAA H2 H1 239.4 240.0
H2 CAA CAF CAE 186.4 180.0
H2 CAA CAF CAG 310.9 300.0
CAF CAA H2 H1 120.7 120.0
H2 CAA CAF H11 70.7 60.1
CAC CAB H3 H4 120.4 239.9
H3 CAB CAA CAF 176.0 60.0
H3 CAB CAA H1 295.8 180.0
H3 CAB CAA H2 56.2 300.0
CAC CAB H4 H3 239.6 120.0
H4 CAB CAA CAF 55.6 180.0
H4 CAB CAA H1 175.4 299.9
H4 CAB CAA H2 295.9 59.9
H5 CAC CAD CAE 63.4 180.0
CAD CAC H5 H6 119.6 240.0
H5 CAC CAD H7 183.4 300.0
H5 CAC CAD H8 303.3 60.0
H5 CAC CAB H3 58.5 60.0
H5 CAC CAB H4 178.8 300.0
H6 CAC CAD CAE 183.1 60.1
CAD CAC H6 H5 240.4 120.0
H6 CAC CAD H7 303.2 180.0
H6 CAC CAD H8 63.1 300.0
H6 CAC CAB H3 298.7 179.9
H6 CAC CAB H4 59.0 59.9
CAC CAD H7 CAE 239.6 240.0
H7 CAD CAC H5 183.4 300.0
H7 CAD CAC H6 303.2 180.0
CAC CAD H7 H8 119.8 120.0
H7 CAD CAE CAF 299.9 300.0
CAE CAD H7 H8 240.2 240.0
H7 CAD CAE H9 59.8 60.1
H7 CAD CAE H10 180.0 180.0
CAC CAD H8 CAE 120.3 120.1
H8 CAD CAC H5 303.3 60.0
H8 CAD CAC H6 63.1 300.0
CAC CAD H8 H7 240.2 240.0
H8 CAD CAE CAF 180.0 180.0
CAE CAD H8 H7 119.8 120.0
H8 CAD CAE H9 299.9 300.1
H8 CAD CAE H10 60.0 60.0
CAD CAE H9 CAF 240.4 240.0
H9 CAE CAD H7 59.8 60.1
H9 CAE CAD H8 299.9 300.1
CAD CAE H9 H10 120.2 119.9
H9 CAE CAF CAG 49.7 60.0
CAF CAE H9 H10 239.8 239.9
H9 CAE CAF H11 291.4 300.0
CAD CAE H10 CAF 119.6 120.0
H10 CAE CAD H7 180.0 180.0
H10 CAE CAD H8 60.0 60.0
CAD CAE H10 H9 239.8 240.1
H10 CAE CAF CAG 289.5 300.0
CAF CAE H10 H9 120.2 120.1
H10 CAE CAF H11 171.2 180.0
CAA CAF H11 CAE 114.4 120.0
CAE CAF H11 CAG 121.4 119.9
H11 CAF CAE H9 291.4 300.0
H11 CAF CAE H10 171.2 180.0
CAA CAF H11 CAG 235.8 240.0
H11 CAF CAA H1 191.1 180.0
H11 CAF CAA H2 70.7 60.1
H11 CAF CAG OAV 139.6 300.0
H11 CAF CAG CAH 262.0 60.0
H11 CAF CAG H12 20.4 180.0
CAF CAG H12 OAV 120.7 120.0
CAF CAG H12 CAH 237.9 240.0
H12 CAG CAF H11 20.4 180.0
OAV CAG H12 CAH 117.2 120.0
H12 CAG OAV H13 298.1 180.0
H12 CAG CAH NAI 38.7 55.0
H12 CAG CAH H14 159.4 175.0
H12 CAG CAH H15 277.9 295.0
H13 OAV CAG CAH 54.7 300.0
H13 OAV CAG H12 298.1 180.0
CAG CAH H14 NAI 235.5 240.0
H14 CAH CAG H12 159.4 175.0
CAG CAH H14 H15 117.7 119.9
H14 CAH NAI CAM 163.8 330.0
H14 CAH NAI CAJ 345.8 149.7
NAI CAH H14 H15 242.2 239.9
CAG CAH H15 NAI 124.5 120.0
H15 CAH CAG H12 277.9 295.0
CAG CAH H15 H14 242.3 240.1
H15 CAH NAI CAM 45.2 209.9
H15 CAH NAI CAJ 227.2 29.7
NAI CAH H15 H14 117.8 120.1
H16 CAU CAT CAS 179.8 180.0
H16 CAU CAT H17 359.8 360.0
H16 CAU CAM CAL 180.4 180.0
CAU CAT H17 CAS 180.0 180.0
H17 CAT CAU H16 359.8 360.0
H17 CAT CAS CAR 179.5 180.0
H17 CAT CAS H18 359.5 359.9
CAT CAS H18 CAR 180.0 180.1
H18 CAS CAT H17 359.5 359.9
H18 CAS CAR H19 1.0 0.0
H19 CAR CAS H18 1.0 0.0
CAJ CAN H20 NAO 180.0 180.0
H20 CAN NAO CAP 177.4 180.0
CAK CAQ H22 CAP 180.0 179.5
H22 CAQ CAP H21 358.1 359.7