PDB Chemical Component XND

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XND

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CL29	C22	1.714	1.736
C22	C21	1.384	1.383
C22	C23	1.386	1.384
C21	C20	1.385	1.383
C20	CL28	1.724	1.736
C20	C16	1.397	1.384
C23	C24	1.382	1.382
C24	C16	1.388	1.382
C16	C11	1.551	1.506
C11	C5	1.536	1.510
C11	N10	1.481	1.447
C5	C6	1.475	1.415
C5	C4	1.359	1.343
C6	O25	1.218	1.216
C6	C1	1.513	1.498
C1	C2	1.536	1.533
N10	C17	1.428	1.349
N10	C9	1.436	1.395
C17	C19	1.512	1.507
C17	O18	1.230	1.212
C9	C15	1.391	1.386
C9	C8	1.411	1.385
C15	C14	1.377	1.384
C14	C13	1.382	1.383
C13	C12	1.386	1.389
C12	O30	1.347	1.361
C12	C8	1.378	1.387
C8	N7	1.412	1.391
N7	C4	1.379	1.357
C4	C3	1.533	1.520
C3	C2	1.521	1.527
C2	C27	1.547	1.530
C2	C26	1.551	1.530
C21	H21	1.080	1.079
C23	H23	1.080	1.081
C24	H24	1.080	1.080
C11	H11	1.101	1.090
C1	H1	1.100	1.089
C1	H1A	1.100	1.090
C19	H19	1.100	1.090
C19	H19A	1.100	1.091
C19	H19B	1.100	1.090
C15	H15	1.080	1.080
C14	H14	1.080	1.080
C13	H13	1.080	1.080
O30	HO30	0.950	0.967
N7	HN7	1.000	0.970
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C27	H27	1.100	1.090
C27	H27A	1.100	1.090
C27	H27B	1.100	1.090
C26	H26	1.100	1.090
C26	H26A	1.100	1.091
C26	H26B	1.099	1.090

Bond Angles for XND

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CL29	C22	C21	120.5	120.0
CL29	C22	C23	118.9	120.0
C21	C22	C23	120.6	120.0
C22	C21	C20	118.7	119.9
C22	C21	H21	120.6	120.0
C22	C23	C24	120.3	120.0
C22	C23	H23	119.8	120.0
C21	C20	CL28	119.9	120.0
C21	C20	C16	121.4	120.0
C20	C21	H21	120.6	120.1
CL28	C20	C16	118.7	120.0
C20	C16	C24	118.8	120.0
C20	C16	C11	118.0	120.0
C23	C24	C16	120.1	120.0
C24	C23	H23	119.8	120.0
C23	C24	H24	119.9	120.0
C24	C16	C11	123.2	120.0
C16	C24	H24	120.0	119.9
C16	C11	C5	113.6	108.5
C16	C11	N10	109.9	108.5
C16	C11	H11	107.6	108.4
C5	C11	N10	113.0	114.4
C11	C5	C6	116.5	113.8
C11	C5	C4	124.5	126.0
C5	C11	H11	104.1	108.5
C11	N10	C17	116.4	119.4
C11	N10	C9	113.4	121.1
N10	C11	H11	108.3	108.4
C6	C5	C4	118.7	120.2
C5	C6	O25	119.4	118.8
C5	C6	C1	118.1	122.4
C5	C4	N7	124.9	124.9
C5	C4	C3	122.7	120.4
O25	C6	C1	122.4	118.8
C6	C1	C2	109.8	108.6
C6	C1	H1	109.4	109.7
C6	C1	H1A	109.3	109.6
C1	C2	C3	108.4	107.7
C1	C2	C27	109.4	109.8
C1	C2	C26	111.0	109.8
C2	C1	H1	109.3	109.6
C2	C1	H1A	109.3	109.6
C17	N10	C9	124.7	119.4
N10	C17	C19	123.1	120.0
N10	C17	O18	120.9	120.0
N10	C9	C15	119.0	121.5
N10	C9	C8	122.7	118.5
C19	C17	O18	116.0	120.0
C17	C19	H19	109.5	109.4
C17	C19	H19A	109.5	109.5
C17	C19	H19B	109.5	109.5
C15	C9	C8	118.3	120.0
C9	C15	C14	121.5	119.6
C9	C15	H15	119.2	120.3
C9	C8	C12	119.8	120.4
C9	C8	N7	126.0	117.2
C15	C14	C13	119.8	120.4
C14	C15	H15	119.3	120.2
C15	C14	H14	120.1	119.8
C14	C13	C12	119.9	120.2
C13	C14	H14	120.1	119.7
C14	C13	H13	120.1	119.9
C13	C12	O30	120.7	120.4
C13	C12	C8	120.8	119.3
C12	C13	H13	120.1	119.9
O30	C12	C8	118.5	120.4
C12	O30	HO30	109.5	114.0
C12	C8	N7	114.3	122.3
C8	N7	C4	133.3	124.8
C8	N7	HN7	113.3	117.6
N7	C4	C3	112.4	114.7
C4	N7	HN7	113.3	117.6
C4	C3	C2	114.9	109.9
C4	C3	H3	107.7	109.4
C4	C3	H3A	106.5	109.4
C3	C2	C27	109.9	109.8
C3	C2	C26	107.0	109.8
C2	C3	H3	107.7	109.4
C2	C3	H3A	106.5	109.4
C27	C2	C26	111.0	109.8
C2	C27	H27	109.5	109.4
C2	C27	H27A	109.5	109.5
C2	C27	H27B	109.5	109.4
C2	C26	H26	109.5	109.5
C2	C26	H26A	109.5	109.4
C2	C26	H26B	109.5	109.5
H1	C1	H1A	109.8	109.7
H19	C19	H19A	109.5	109.5
H19	C19	H19B	109.4	109.5
H19A	C19	H19B	109.5	109.5
H3	C3	H3A	113.8	109.3
H27	C27	H27A	109.4	109.5
H27	C27	H27B	109.5	109.5
H27A	C27	H27B	109.5	109.5
H26	C26	H26A	109.4	109.5
H26	C26	H26B	109.5	109.5
H26A	C26	H26B	109.5	109.4

Torsion Angles for XND

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C21	C22	CL29	C23	179.9	180.2
CL29	C22	C21	C20	179.8	180.0
CL29	C22	C21	H21	359.8	0.0
CL29	C22	C23	C24	180.1	180.0
CL29	C22	C23	H23	0.1	0.0
CL29	C22	C21	C23	180.1	179.8
C21	C22	C23	C24	0.2	359.8
C21	C22	C23	H23	180.2	179.8
C22	C21	C20	CL28	179.9	180.1
C22	C21	C20	C16	0.2	0.1
C20	C21	C22	H21	180.0	180.0
CL29	C22	C23	C21	179.9	180.2
C23	C22	C21	C20	359.8	0.2
C23	C22	C21	H21	179.7	180.2
C22	C23	C24	C16	359.9	359.9
C24	C23	C22	H23	180.0	180.0
C22	C23	C24	H24	179.9	180.0
C20	C21	C22	C23	359.8	0.2
C22	C21	C20	H21	180.0	180.0
CL28	C20	C21	C16	179.7	180.0
C21	C20	C16	C24	359.8	359.6
C21	C20	C16	C11	179.9	180.0
C21	C20	CL28	C16	180.3	180.0
CL28	C20	C21	H21	359.9	0.0
CL28	C20	C16	C24	180.2	179.7
CL28	C20	C16	C11	0.3	360.0
C21	C20	C16	CL28	179.7	180.0
C16	C20	C21	H21	180.3	180.0
C23	C24	C16	C20	0.1	0.3
C24	C16	C20	C11	179.9	179.7
C20	C16	C24	H24	180.1	180.2
C20	C16	C11	C5	176.9	162.1
C20	C16	C11	N10	304.6	286.9
C20	C16	C11	H11	62.2	44.4
C22	C23	C24	H23	180.0	180.0
C20	C16	C24	C23	0.1	0.3
C23	C24	C16	C11	180.0	180.0
C16	C24	C23	H24	180.0	179.9
C20	C16	C24	C11	180.1	180.3
C16	C24	C23	H23	179.9	179.9
C23	C24	C16	H24	180.0	180.1
C24	C16	C11	C5	357.0	342.4
C24	C16	C11	N10	124.7	107.2
C24	C16	C11	H11	242.3	224.7
C20	C16	C11	C24	179.9	179.7
C11	C16	C24	H24	0.0	359.9
C5	C11	C16	N10	232.3	235.2
C16	C11	C5	C6	258.6	289.4
C16	C11	C5	C4	73.4	109.6
C5	C11	C16	H11	114.6	117.7
C16	C11	N10	C17	157.5	123.4
C16	C11	N10	C9	312.7	303.3
N10	C11	C16	H11	242.3	242.5
C16	C11	C5	N10	126.1	121.3
C16	C11	C5	H11	243.3	242.4
C5	C11	N10	C17	285.5	244.6
C5	C11	N10	C9	80.7	64.5
N10	C11	C5	H11	117.2	121.1
C6	C5	C11	C4	185.2	179.8
C11	C5	C6	O25	12.0	0.9
C11	C5	C6	C1	188.7	180.9
C11	C5	C4	N7	9.4	1.0
C11	C5	C4	C3	188.8	181.8
C16	C11	N10	C5	232.0	238.7
C16	C11	N10	H11	117.2	117.6
N10	C11	C5	C6	132.5	168.1
N10	C11	C5	C4	307.3	348.3
C5	C11	N10	H11	245.3	238.8
C17	N10	C11	C9	204.8	180.1
C11	N10	C17	C19	158.6	180.0
C11	N10	C17	O18	340.4	0.0
C11	N10	C9	C15	124.2	114.8
C11	N10	C9	C8	307.1	295.3
C6	C5	C11	N10	132.5	168.1
C11	C5	C6	C4	175.1	180.2
C6	C5	C11	H11	15.3	47.0
C6	C5	C4	N7	184.1	181.2
C6	C5	C4	C3	3.5	2.0
O25	C6	C5	C1	183.3	180.0
C5	C6	C1	C2	314.3	27.7
C5	C6	C1	H1	74.3	147.4
C5	C6	C1	H1A	194.5	268.0
C4	C5	C11	N10	307.3	348.3
C11	C5	C4	C6	185.3	179.8
C4	C5	C11	H11	190.1	227.2
C4	C5	C6	O25	196.8	180.7
C4	C5	C6	C1	13.5	0.7
C8	N7	C4	C5	357.3	313.1
N7	C4	C5	C3	180.6	179.2
C5	C4	N7	HN7	177.3	133.2
C5	C4	C3	C2	13.3	326.8
C5	C4	C3	H3	133.3	87.0
C5	C4	C3	H3A	255.7	206.7
O25	C6	C5	C4	196.8	180.7
C5	C6	O25	C1	176.5	180.0
O25	C6	C1	C2	130.9	207.6
O25	C6	C1	H1	250.9	327.4
O25	C6	C1	H1A	11.0	87.9
C1	C6	C5	C4	13.5	0.7
C5	C6	C1	O25	183.4	180.0
C6	C1	C2	C3	59.2	303.6
C6	C1	C2	C27	179.1	63.1
C6	C1	C2	C26	301.9	184.0
C2	C1	C6	H1	240.0	240.2
C2	C1	C6	H1A	119.8	119.7
H1	C1	C6	H1A	239.8	239.5
C6	C1	C2	H1	120.0	119.8
C6	C1	C2	H1A	240.1	240.3
C4	C3	C2	C1	315.8	59.9
C3	C2	C1	C27	240.2	240.4
C3	C2	C1	C26	117.3	119.6
C1	C2	C3	H3	195.8	299.8
C1	C2	C3	H3A	73.4	180.0
C27	C2	C1	C26	237.2	239.1
C1	C2	C27	H27	309.5	60.0
C1	C2	C27	H27A	69.5	180.0
C1	C2	C27	H27B	189.5	300.0
C1	C2	C26	H26	218.0	60.1
C1	C2	C26	H26A	338.0	180.1
C1	C2	C26	H26B	98.0	300.0
H1	C1	C2	H1A	120.1	120.5
C11	N10	C17	C9	152.1	179.9
C17	N10	C11	H11	40.3	5.8
C17	N10	C9	C15	276.9	294.7
C17	N10	C9	C8	99.9	115.2
C19	C17	N10	O18	178.2	179.9
N10	C17	C19	H19	354.8	90.0
N10	C17	C19	H19A	114.8	210.0
N10	C17	C19	H19B	234.8	330.0
C11	N10	C9	C17	207.2	180.1
C9	N10	C11	H11	195.5	185.7
C9	N10	C17	C19	6.5	0.0
C9	N10	C17	O18	188.3	180.1
C15	C9	N10	C8	177.0	179.5
N10	C9	C15	C14	180.9	182.2
N10	C9	C15	H15	0.9	2.1
N10	C9	C8	C12	179.3	176.8
N10	C9	C8	N7	0.2	353.7
C19	C17	N10	C9	6.5	0.0
N10	C17	C19	O18	181.7	180.1
H19	C19	C17	H19A	240.0	240.0
H19	C19	C17	H19B	120.0	120.0
H19A	C19	C17	H19B	240.0	240.0
O18	C17	N10	C9	188.3	180.1
N10	C17	O18	C19	178.3	179.9
O18	C17	C19	H19	173.1	270.0
O18	C17	C19	H19A	293.1	29.9
O18	C17	C19	H19B	53.1	150.0
N10	C9	C15	C8	182.8	180.5
C15	C9	C8	C12	2.2	357.3
C15	C9	C8	N7	183.2	174.2
C9	C15	C14	C13	0.7	0.1
C14	C15	C9	H15	180.0	180.1
C9	C15	C14	H14	180.6	180.2
N10	C9	C8	C15	177.1	179.5
C8	C9	C15	C14	358.1	1.7
C8	C9	C15	H15	178.1	181.6
C13	C12	C8	C9	358.7	1.9
O30	C12	C8	C9	179.3	181.9
C12	C8	C9	N7	179.1	183.1
C9	C8	N7	C4	19.8	65.1
C9	C8	N7	HN7	199.8	245.1
C14	C15	C9	C8	358.1	1.7
C9	C15	C14	H15	180.0	179.9
C15	C14	C13	C12	0.4	359.1
C13	C14	C15	H14	180.0	179.9
C15	C14	C13	H13	180.4	179.0
C13	C14	C15	H15	180.6	180.2
C15	C14	C13	H14	180.0	180.1
C14	C13	C12	O30	179.3	179.9
C14	C13	C12	C8	360.0	359.9
C12	C13	C14	H13	180.0	180.1
C9	C8	C12	C13	358.7	1.9
C12	C13	C14	H14	180.4	179.0
C14	C13	C12	H13	180.0	179.9
O30	C12	C13	C8	179.3	180.1
C13	C12	O30	HO30	99.6	90.0
C13	C12	C8	N7	177.9	185.2
C9	C8	C12	O30	179.3	181.9
C13	C12	O30	C8	180.6	179.9
O30	C12	C13	H13	359.3	0.0
O30	C12	C8	N7	358.5	5.1
C9	C8	C12	N7	180.8	176.8
C13	C12	C8	O30	179.4	180.1
C8	C12	C13	H13	180.0	180.0
C8	C12	O30	HO30	279.0	270.0
C12	C8	N7	C4	200.7	242.0
C12	C8	N7	HN7	20.7	61.9
C5	C4	N7	C8	357.3	313.1
C9	C8	N7	C12	179.1	183.1
C8	N7	C4	C3	177.8	132.4
C4	N7	C8	HN7	180.0	180.0
C5	C4	N7	C3	179.5	180.7
C8	N7	C4	HN7	180.0	180.0
N7	C4	C3	C2	192.8	147.5
N7	C4	C3	H3	312.8	267.7
N7	C4	C3	H3A	75.2	27.4
C5	C4	C3	N7	180.5	179.3
C1	C2	C3	C4	315.8	59.9
C3	C4	N7	HN7	357.8	312.4
C4	C3	C2	C27	196.2	300.4
C4	C3	C2	C26	75.6	179.5
C2	C3	C4	H3	240.0	239.8
C2	C3	C4	H3A	117.6	120.1
H3	C3	C4	H3A	237.6	240.3
C1	C2	C3	C27	119.6	119.6
C1	C2	C3	C26	240.2	240.5
C3	C2	C1	H1	299.2	183.8
C3	C2	C1	H1A	179.1	63.3
C4	C3	C2	H3	120.0	120.1
C4	C3	C2	H3A	242.4	239.9
C27	C2	C3	C26	120.6	120.9
C3	C2	C27	H27	68.5	178.3
C3	C2	C27	H27A	188.4	298.3
C3	C2	C27	H27B	308.5	58.3
C3	C2	C26	H26	99.8	301.8
C3	C2	C26	H26A	219.8	61.8
C3	C2	C26	H26B	339.8	181.7
H3	C3	C2	H3A	122.4	119.8
C1	C2	C27	C3	241.1	241.7
C1	C2	C27	C26	122.9	120.8
C27	C2	C1	H1	59.1	303.3
C27	C2	C1	H1A	298.9	182.9
C3	C2	C27	C26	241.8	239.1
C27	C2	C3	H3	76.2	180.2
C27	C2	C3	H3A	313.8	60.4
C27	C2	C26	H26	339.9	180.9
C27	C2	C26	H26A	99.9	300.9
C27	C2	C26	H26B	219.9	60.8
H27	C27	C2	H27A	240.0	240.0
H27	C27	C2	H27B	120.0	119.9
H27A	C27	C2	H27B	240.0	240.0
C1	C2	C26	C3	118.2	118.3
C1	C2	C26	C27	238.1	239.1
C26	C2	C1	H1	181.9	64.2
C26	C2	C1	H1A	61.7	303.7
C3	C2	C26	C27	119.9	120.9
C26	C2	C3	H3	315.6	59.3
C26	C2	C3	H3A	193.2	299.6
C26	C2	C27	H27	186.7	299.1
C26	C2	C27	H27A	306.6	59.2
C26	C2	C27	H27B	66.7	179.2
H26	C26	C2	H26A	240.0	240.0
H26	C26	C2	H26B	120.0	120.1
H26A	C26	C2	H26B	240.0	240.1
H21	C21	C22	C23	179.7	180.2
C22	C21	H21	C20	180.0	180.0
H21	C21	C20	CL28	359.9	0.0
H21	C21	C20	C16	180.3	180.0
C22	C23	H23	C24	180.0	180.0
H23	C23	C24	C16	179.9	179.9
H23	C23	C24	H24	359.9	0.0
C23	C24	H24	C16	180.0	179.9
H24	C24	C23	H23	359.9	0.0
H24	C24	C16	C11	0.0	359.9
C16	C11	H11	C5	120.9	117.6
C16	C11	H11	N10	241.3	242.4
C5	C11	H11	N10	120.4	124.8
H11	C11	C5	C6	15.3	47.0
H11	C11	C5	C4	190.1	227.2
H11	C11	N10	C17	40.3	5.8
H11	C11	N10	C9	195.5	185.7
C6	C1	H1	C2	239.8	240.8
C6	C1	H1	H1A	119.9	120.5
H1	C1	C2	C3	299.2	183.8
H1	C1	C2	C27	59.1	303.3
H1	C1	C2	C26	181.9	64.2
C2	C1	H1	H1A	240.1	239.6
C6	C1	H1A	C2	120.2	119.1
C6	C1	H1A	H1	240.1	239.5
H1A	C1	C2	C3	179.1	63.3
H1A	C1	C2	C27	298.9	182.9
H1A	C1	C2	C26	61.7	303.7
C2	C1	H1A	H1	119.9	120.4
H19	C19	C17	O18	173.1	270.0
C17	C19	H19	H19A	120.0	119.9
C17	C19	H19	H19B	240.0	240.0
H19A	C19	H19	H19B	120.0	120.1
H19A	C19	C17	O18	293.1	29.9
C17	C19	H19A	H19	239.9	240.1
C17	C19	H19A	H19B	120.0	120.0
H19	C19	H19A	H19B	240.1	239.9
H19B	C19	C17	O18	53.1	150.0
C17	C19	H19B	H19	120.0	120.0
C17	C19	H19B	H19A	240.0	240.0
H19	C19	H19B	H19A	120.0	120.0
H15	C15	C9	C8	178.1	181.6
C9	C15	H15	C14	180.0	180.1
H15	C15	C14	C13	180.6	180.2
H15	C15	C14	H14	0.6	0.3
C15	C14	H14	C13	180.0	179.9
H14	C14	C15	H15	0.6	0.3
H14	C14	C13	C12	180.4	179.0
H14	C14	C13	H13	0.4	358.9
C14	C13	H13	C12	180.0	180.1
H13	C13	C14	H14	0.4	358.9
H13	C13	C12	O30	359.3	0.0
H13	C13	C12	C8	180.0	180.0
HO30	O30	C12	C8	279.0	270.0
C8	N7	HN7	C4	180.0	180.0
HN7	N7	C4	C3	357.8	312.4
C4	C3	H3	C2	235.5	239.6
C4	C3	H3	H3A	117.8	119.8
H3	C3	C2	C27	76.2	180.2
H3	C3	C2	C26	315.6	59.3
C2	C3	H3	H3A	242.2	240.2
C4	C3	H3A	C2	123.0	120.4
C4	C3	H3A	H3	241.5	240.2
H3A	C3	C2	C27	313.8	60.4
H3A	C3	C2	C26	193.2	299.6
C2	C3	H3A	H3	118.5	119.8
H27	C27	C2	C26	186.7	299.1
C2	C27	H27	H27A	120.0	120.0
C2	C27	H27	H27B	240.0	240.1
H27A	C27	H27	H27B	120.0	120.1
H27A	C27	C2	C26	306.6	59.2
C2	C27	H27A	H27	240.0	240.0
C2	C27	H27A	H27B	120.0	120.0
H27	C27	H27A	H27B	240.0	240.0
H27B	C27	C2	C26	66.7	179.2
C2	C27	H27B	H27	120.1	119.9
C2	C27	H27B	H27A	240.0	240.0
H27	C27	H27B	H27A	119.9	120.1
C2	C26	H26	H26A	120.0	120.0
C2	C26	H26	H26B	240.0	240.0
H26A	C26	H26	H26B	120.0	120.0
C2	C26	H26A	H26	240.0	240.0
C2	C26	H26A	H26B	120.0	120.0
H26	C26	H26A	H26B	240.0	240.0
C2	C26	H26B	H26	120.0	120.1
C2	C26	H26B	H26A	240.0	240.1
H26	C26	H26B	H26A	120.0	120.0