PDB Chemical Component XM5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XM5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O15 |
C9 |
1.254 |
1.220 |
| C8 |
C9 |
1.393 |
1.403 |
| C9 |
N10 |
1.430 |
1.344 |
| N10 |
C3 |
1.406 |
1.382 |
| N10 |
C14 |
1.473 |
1.465 |
| C14 |
H14 |
1.100 |
1.091 |
| C14 |
H14A |
1.100 |
1.090 |
| C14 |
H14B |
1.100 |
1.089 |
| C2 |
C3 |
1.481 |
1.406 |
| C3 |
C4 |
1.470 |
1.392 |
| C4 |
C5 |
1.447 |
1.389 |
| C4 |
O11 |
1.363 |
1.366 |
| C6 |
C5 |
1.389 |
1.393 |
| C5 |
O13 |
1.352 |
1.366 |
| O13 |
C12 |
1.437 |
1.439 |
| O11 |
C12 |
1.434 |
1.440 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C1 |
C6 |
1.393 |
1.364 |
| C6 |
H6 |
1.080 |
1.080 |
| C2 |
C1 |
1.405 |
1.398 |
| C1 |
H1 |
1.080 |
1.081 |
| C7 |
C2 |
1.489 |
1.469 |
| O16 |
C7 |
1.367 |
1.353 |
| C8 |
C7 |
1.400 |
1.366 |
| C8 |
H8 |
1.080 |
1.079 |
| O16 |
C17 |
1.440 |
1.429 |
| C17 |
H17 |
1.100 |
1.091 |
| C17 |
H17A |
1.100 |
1.090 |
| C17 |
H17B |
1.101 |
1.090 |
Bond Angles for XM5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
C9 |
N10 |
118.4 |
119.1 |
| C9 |
N10 |
C3 |
118.8 |
121.1 |
| C9 |
N10 |
C14 |
118.2 |
119.4 |
| C14 |
N10 |
C3 |
122.9 |
119.4 |
| N10 |
C3 |
C4 |
124.3 |
121.0 |
| N10 |
C14 |
H14 |
109.5 |
109.5 |
| N10 |
C14 |
H14A |
109.5 |
109.5 |
| N10 |
C14 |
H14B |
109.4 |
109.5 |
| H14 |
C14 |
H14A |
109.5 |
109.5 |
| H14 |
C14 |
H14B |
109.5 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
| C3 |
C4 |
C5 |
119.2 |
119.7 |
| C3 |
C4 |
O11 |
131.9 |
131.5 |
| C5 |
C4 |
O11 |
108.8 |
108.8 |
| C4 |
C5 |
O13 |
107.2 |
108.6 |
| C4 |
O11 |
C12 |
107.6 |
105.4 |
| C5 |
O13 |
C12 |
108.8 |
105.6 |
| O13 |
C12 |
H12 |
110.8 |
110.6 |
| O13 |
C12 |
H12A |
111.6 |
110.6 |
| O11 |
C12 |
H12 |
110.8 |
110.6 |
| O11 |
C12 |
H12A |
111.6 |
110.7 |
| H12 |
C12 |
H12A |
106.5 |
110.5 |
| C1 |
C6 |
H6 |
121.2 |
119.7 |
| C2 |
C1 |
H1 |
118.5 |
120.0 |
| O16 |
C17 |
H17 |
109.5 |
109.5 |
| O16 |
C17 |
H17A |
109.5 |
109.5 |
| O16 |
C17 |
H17B |
109.4 |
109.5 |
| H17 |
C17 |
H17A |
109.5 |
109.5 |
| H17 |
C17 |
H17B |
109.4 |
109.5 |
| H17A |
C17 |
H17B |
109.5 |
109.5 |
Torsion Angles for XM5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
C9 |
N10 |
C3 |
178.8 |
180.0 |
| O15 |
C9 |
N10 |
C14 |
1.7 |
360.0 |
| C14 |
N10 |
C9 |
C3 |
182.9 |
180.0 |
| C9 |
N10 |
C3 |
C4 |
180.4 |
180.0 |
| C9 |
N10 |
C14 |
H14 |
108.1 |
0.0 |
| C9 |
N10 |
C14 |
H14A |
228.1 |
120.0 |
| C9 |
N10 |
C14 |
H14B |
348.1 |
240.0 |
| C9 |
N10 |
C3 |
C14 |
183.1 |
180.0 |
| C3 |
N10 |
C14 |
H14 |
291.1 |
180.0 |
| C3 |
N10 |
C14 |
H14A |
51.1 |
300.0 |
| C3 |
N10 |
C14 |
H14B |
171.2 |
60.0 |
| N10 |
C3 |
C4 |
C5 |
180.5 |
180.0 |
| N10 |
C3 |
C4 |
O11 |
3.4 |
0.0 |
| C9 |
N10 |
C14 |
C3 |
177.0 |
180.0 |
| C14 |
N10 |
C3 |
C4 |
357.3 |
0.0 |
| H14 |
C14 |
N10 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
N10 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
N10 |
H14B |
240.0 |
240.0 |
| H14 |
C14 |
N10 |
C3 |
291.1 |
180.0 |
| N10 |
C14 |
H14 |
H14A |
120.0 |
120.0 |
| N10 |
C14 |
H14 |
H14B |
240.0 |
240.0 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
N10 |
C3 |
51.1 |
300.0 |
| N10 |
C14 |
H14A |
H14 |
240.0 |
240.0 |
| N10 |
C14 |
H14A |
H14B |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
240.0 |
| H14B |
C14 |
N10 |
C3 |
171.2 |
60.0 |
| N10 |
C14 |
H14B |
H14 |
120.0 |
120.0 |
| N10 |
C14 |
H14B |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
120.0 |
| C5 |
C4 |
C3 |
O11 |
177.1 |
180.0 |
| C3 |
C4 |
C5 |
O13 |
180.2 |
180.0 |
| C3 |
C4 |
O11 |
C12 |
170.6 |
162.7 |
| C3 |
C4 |
C5 |
O11 |
182.3 |
180.0 |
| C5 |
C4 |
O11 |
C12 |
353.3 |
342.7 |
| C4 |
C5 |
O13 |
C12 |
10.0 |
17.4 |
| C3 |
C4 |
O11 |
C5 |
177.3 |
180.0 |
| O11 |
C4 |
C5 |
O13 |
357.9 |
359.9 |
| C4 |
O11 |
C12 |
H12 |
252.5 |
268.6 |
| C4 |
O11 |
C12 |
H12A |
134.0 |
145.7 |
| O13 |
C5 |
C4 |
O11 |
357.9 |
359.9 |
| C5 |
O13 |
C12 |
H12 |
106.0 |
91.4 |
| C5 |
O13 |
C12 |
H12A |
224.5 |
214.2 |
| C4 |
O11 |
C12 |
O13 |
12.5 |
27.1 |
| O11 |
C12 |
O13 |
H12 |
240.0 |
241.4 |
| O11 |
C12 |
O13 |
H12A |
121.5 |
118.7 |
| H12 |
C12 |
O13 |
H12A |
241.5 |
237.2 |
| O13 |
C12 |
O11 |
H12 |
120.0 |
118.5 |
| O13 |
C12 |
O11 |
H12A |
238.5 |
241.4 |
| H12 |
C12 |
O11 |
H12A |
118.5 |
122.9 |
| O13 |
C12 |
H12 |
H12A |
121.6 |
122.8 |
| O11 |
C12 |
H12 |
H12A |
238.4 |
237.1 |
| O13 |
C12 |
H12A |
H12 |
239.0 |
237.2 |
| O11 |
C12 |
H12A |
H12 |
121.0 |
122.9 |
| C2 |
C1 |
C6 |
H6 |
179.8 |
180.0 |
| H1 |
C1 |
C6 |
H6 |
359.8 |
360.0 |
| C7 |
C2 |
C1 |
H1 |
0.5 |
0.0 |
| H17 |
C17 |
O16 |
H17A |
240.0 |
240.0 |
| H17 |
C17 |
O16 |
H17B |
120.0 |
120.0 |
| H17A |
C17 |
O16 |
H17B |
240.0 |
240.0 |
| O16 |
C17 |
H17 |
H17A |
120.0 |
120.0 |
| O16 |
C17 |
H17 |
H17B |
240.0 |
240.0 |
| H17A |
C17 |
H17 |
H17B |
120.0 |
120.0 |
| O16 |
C17 |
H17A |
H17 |
240.0 |
240.0 |
| O16 |
C17 |
H17A |
H17B |
120.0 |
120.0 |
| H17 |
C17 |
H17A |
H17B |
240.0 |
240.0 |
| O16 |
C17 |
H17B |
H17 |
120.0 |
120.0 |
| O16 |
C17 |
H17B |
H17A |
240.0 |
240.0 |
| H17 |
C17 |
H17B |
H17A |
120.0 |
120.0 |