PDB Chemical Component XLD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XLD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N2	1.372	1.324
C1	C6	1.417	1.391
C1	N7	1.366	1.394
N2	C3	1.335	1.320
C3	C4	1.417	1.382
C3	HC3	1.103	1.079
C4	CL1	1.762	1.735
C4	C5	1.420	1.389
C5	C6	1.408	1.384
C5	HC5	1.103	1.080
C6	HC6	1.103	1.080
N7	C9	1.375	1.348
N7	HN7	1.020	0.970
C9	O10	1.261	1.216
C9	C11	1.445	1.474
C11	C12	1.456	1.401
C11	C16	1.411	1.398
C12	C13	1.429	1.394
C12	N19	1.374	1.394
C13	C14	1.421	1.384
C13	O17	1.363	1.359
C14	C15	1.413	1.386
C14	H141	1.103	1.080
C15	CL2	1.685	1.735
C15	C16	1.391	1.379
C16	H161	1.103	1.081
O17	C18	1.424	1.429
C18	H181	1.115	1.090
C18	H182	1.115	1.089
C18	H183	1.115	1.090
N19	C20	1.367	1.346
N19	H191	1.020	0.970
C20	O21	1.261	1.218
C20	C22	1.437	1.464
C22	S23	1.748	1.783
C22	C26	1.423	1.388
S23	C24	1.714	1.734
C24	C25	1.387	1.358
C24	H241	1.103	1.080
C25	C26	1.413	1.373
C25	C28	1.498	1.507
C26	CL3	1.706	1.736
C28	N29	1.511	1.465
C28	H281	1.115	1.090
C28	H282	1.115	1.090
N29	C31	1.490	1.465
N29	C32	1.417	1.373
C31	H311	1.115	1.090
C31	H312	1.115	1.090
C31	H313	1.115	1.090
C32	N33	1.354	1.298
C32	O36	1.350	1.347
N33	C34	1.414	1.476
C34	C35	1.546	1.547
C34	H341	1.115	1.090
C34	H342	1.114	1.090
C35	O36	1.429	1.443
C35	H351	1.115	1.090
C35	H352	1.115	1.090

Bond Angles for XLD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	C6	118.8	120.6
N2	C1	N7	121.9	119.7
C1	N2	C3	123.6	121.7
C6	C1	N7	119.2	119.7
C1	C6	C5	119.0	119.1
C1	C6	HC6	120.8	120.4
C1	N7	C9	128.7	120.0
C1	N7	HN7	115.2	120.0
N2	C3	C4	120.3	120.8
N2	C3	HC3	116.9	119.6
C4	C3	HC3	122.8	119.6
C3	C4	CL1	120.8	120.4
C3	C4	C5	118.1	119.3
CL1	C4	C5	121.1	120.3
C4	C5	C6	120.2	118.5
C4	C5	HC5	120.3	120.8
C6	C5	HC5	119.5	120.7
C5	C6	HC6	120.2	120.5
C9	N7	HN7	116.1	120.0
N7	C9	O10	120.9	120.0
N7	C9	C11	119.2	120.0
O10	C9	C11	119.9	120.0
C9	C11	C12	125.2	120.2
C9	C11	C16	116.7	120.2
C12	C11	C16	118.2	119.7
C11	C12	C13	119.7	119.7
C11	C12	N19	119.4	120.2
C11	C16	C15	122.2	120.0
C11	C16	H161	119.6	120.0
C13	C12	N19	120.9	120.1
C12	C13	C14	119.5	119.9
C12	C13	O17	118.4	120.0
C12	N19	C20	127.0	120.0
C12	N19	H191	116.8	120.0
C14	C13	O17	122.1	120.1
C13	C14	C15	120.4	120.4
C13	C14	H141	120.1	119.8
C13	O17	C18	129.5	106.8
C15	C14	H141	119.5	119.8
C14	C15	CL2	121.6	119.8
C14	C15	C16	120.0	120.3
CL2	C15	C16	118.4	119.9
C15	C16	H161	118.2	120.0
O17	C18	H181	105.2	109.5
O17	C18	H182	129.5	109.5
O17	C18	H183	105.2	109.5
H181	C18	H182	105.3	109.5
H181	C18	H183	103.9	109.4
H182	C18	H183	105.2	109.4
C20	N19	H191	116.2	120.0
N19	C20	O21	117.4	120.0
N19	C20	C22	124.1	120.0
O21	C20	C22	118.4	120.0
C20	C22	S23	118.8	129.1
C20	C22	C26	130.1	129.1
S23	C22	C26	111.1	101.9
C22	S23	C24	90.1	98.7
C22	C26	C25	113.2	117.0
C22	C26	CL3	125.9	121.5
S23	C24	C25	115.5	103.2
S23	C24	H241	131.8	128.4
C25	C24	H241	112.7	128.4
C24	C25	C26	110.1	119.2
C24	C25	C28	125.6	120.4
C26	C25	C28	124.3	120.4
C25	C26	CL3	120.9	121.5
C25	C28	N29	122.3	109.5
C25	C28	H281	107.7	109.5
C25	C28	H282	107.6	109.5
N29	C28	H281	107.6	109.4
N29	C28	H282	107.7	109.4
C28	N29	C31	117.8	120.0
C28	N29	C32	113.1	120.0
H281	C28	H282	102.1	109.5
C31	N29	C32	113.7	120.0
N29	C31	H311	109.2	109.4
N29	C31	H312	117.7	109.5
N29	C31	H313	109.2	109.5
N29	C32	N33	123.8	123.1
N29	C32	O36	125.8	123.1
H311	C31	H312	109.2	109.5
H311	C31	H313	100.9	109.5
H312	C31	H313	109.2	109.4
N33	C32	O36	110.4	113.8
C32	N33	C34	111.5	108.4
C32	O36	C35	110.6	107.7
N33	C34	C35	103.6	101.9
N33	C34	H341	114.4	110.9
N33	C34	H342	114.4	110.9
C35	C34	H341	114.5	110.9
C35	C34	H342	114.4	110.9
C34	C35	O36	103.9	101.3
C34	C35	H351	114.3	111.0
C34	C35	H352	114.3	111.0
H341	C34	H342	96.0	110.9
O36	C35	H351	114.3	111.3
O36	C35	H352	114.3	111.0
H351	C35	H352	96.2	110.9

Torsion Angles for XLD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	N2	N7	182.2	179.7
N2	C1	C6	C5	358.6	0.3
N2	C1	C6	HC6	178.6	180.3
N2	C1	N7	C9	27.4	4.8
N2	C1	N7	HN7	207.4	184.9
C1	N2	C3	C4	359.7	0.5
C1	N2	C3	HC3	179.8	180.3
N2	C1	C6	N7	177.8	180.3
C6	C1	N2	C3	1.7	359.4
C6	C1	N7	C9	205.1	185.1
C6	C1	N7	HN7	25.2	5.2
C4	C5	C6	C1	359.9	0.1
C1	C6	C5	HC5	179.9	180.0
C5	C6	C1	HC6	180.0	180.0
N2	C1	N7	C6	182.2	179.7
N7	C1	N2	C3	179.4	179.7
N7	C1	C6	C5	180.8	180.0
N7	C1	C6	HC6	0.7	360.0
C9	N7	C1	HN7	180.0	179.9
C1	N7	C9	O10	0.6	354.7
C1	N7	C9	C11	182.1	174.8
C3	N2	C1	C6	1.7	359.4
C3	N2	C1	N7	179.4	179.7
C4	C3	N2	HC3	180.0	180.2
N2	C3	C4	CL1	175.3	179.7
N2	C3	C4	C5	358.7	359.8
N2	C3	C4	HC3	180.0	179.8
CL1	C4	C3	C5	176.6	179.9
C3	C4	C5	C6	1.5	359.9
C3	C4	C5	HC5	181.5	180.0
N2	C3	HC3	C4	180.0	180.2
HC3	C3	C4	CL1	355.3	359.9
HC3	C3	C4	C5	178.7	180.0
CL1	C4	C3	HC3	355.3	359.9
C3	C4	CL1	C5	183.5	180.1
CL1	C4	C5	C6	184.9	180.0
CL1	C4	C5	HC5	4.9	0.1
C1	C6	C5	C4	359.9	0.1
C5	C4	C3	HC3	178.7	180.0
C3	C4	C5	CL1	176.6	179.9
C6	C5	C4	HC5	180.0	180.0
C4	C5	C6	HC6	179.9	180.0
C5	C6	C1	N7	180.8	180.0
C1	C6	C5	HC6	180.0	180.0
C4	C5	C6	HC5	180.0	180.0
C4	C5	HC5	C6	180.0	180.0
HC5	C5	C6	HC6	359.9	360.0
HC6	C6	C1	N7	0.7	360.0
C1	C6	HC6	C5	180.0	180.0
HC6	C6	C5	HC5	359.9	360.0
C1	N7	C9	HN7	180.0	180.1
O10	C9	N7	C11	178.5	179.9
N7	C9	C11	C12	218.9	180.3
N7	C9	C11	C16	38.6	360.0
C1	N7	HN7	C9	180.0	179.9
HN7	N7	C9	O10	180.6	174.7
HN7	N7	C9	C11	2.1	354.7
O10	C9	N7	HN7	180.6	174.7
N7	C9	O10	C11	181.5	180.1
O10	C9	C11	C12	40.4	0.3
O10	C9	C11	C16	220.1	180.0
C11	C9	N7	HN7	2.1	354.7
N7	C9	C11	O10	178.5	179.9
C12	C11	C9	C16	180.3	180.3
C9	C11	C12	C13	180.0	180.3
C9	C11	C12	N19	0.8	359.7
C9	C11	C16	C15	180.4	180.0
C9	C11	C16	H161	0.4	0.0
C9	C11	C12	C16	179.7	179.7
C12	C11	C16	C15	0.2	359.7
C12	C11	C16	H161	180.2	179.7
C13	C12	C11	N19	179.2	180.5
C11	C12	C13	C14	359.7	359.5
C11	C12	C13	O17	179.8	179.7
C11	C12	N19	C20	116.8	120.1
C11	C12	N19	H191	296.8	300.0
C9	C11	C16	C12	180.3	180.3
C16	C11	C12	C13	0.3	0.5
C16	C11	C12	N19	181.1	180.0
C14	C15	C16	C11	359.4	0.1
CL2	C15	C16	C11	179.8	180.1
C15	C16	C11	H161	180.0	180.0
C13	C12	C11	C16	0.3	0.5
C11	C12	C13	N19	180.8	179.5
C13	C12	N19	C20	297.6	299.5
C13	C12	N19	H191	117.6	119.5
C14	C13	C12	O17	179.9	179.7
C12	C13	C14	C15	359.9	0.3
C12	C13	C14	H141	179.9	180.3
C12	C13	O17	C18	180.6	179.7
N19	C12	C11	C16	181.1	180.0
C11	C12	N19	C13	179.2	180.5
N19	C12	C13	C14	178.9	180.0
N19	C12	C13	O17	359.0	0.3
C20	N19	C12	H191	180.0	180.0
C12	N19	C20	O21	359.1	359.9
C12	N19	C20	C22	182.6	180.0
C14	C13	C12	N19	178.9	180.0
C12	C13	C14	O17	180.1	180.3
C14	C13	O17	C18	0.7	360.0
C15	C14	C13	H141	180.0	180.0
C13	C14	C15	CL2	180.1	180.0
C13	C14	C15	C16	0.5	360.0
O17	C13	C12	N19	359.0	0.3
C12	C13	O17	C14	179.9	179.7
O17	C13	C14	C15	179.8	180.0
O17	C13	C14	H141	359.8	0.0
C13	O17	C18	H181	54.7	180.0
C13	O17	C18	H182	180.0	300.0
C13	O17	C18	H183	305.3	60.0
C11	C16	C15	C14	359.4	0.1
C15	C14	C13	O17	179.8	180.0
C13	C14	C15	H141	180.0	180.0
CL2	C15	C14	C16	179.6	180.0
C14	C15	C16	H161	179.4	180.0
H141	C14	C13	O17	359.8	0.0
C13	C14	H141	C15	180.0	180.0
H141	C14	C15	CL2	0.1	360.0
H141	C14	C15	C16	180.5	180.0
C11	C16	C15	CL2	179.8	180.1
CL2	C15	C14	H141	0.1	360.0
C14	C15	CL2	C16	180.4	180.0
CL2	C15	C16	H161	359.8	0.0
C11	C16	C15	H161	180.0	180.0
C16	C15	C14	H141	180.5	180.0
C14	C15	C16	CL2	179.6	180.0
C11	C16	H161	C15	180.0	180.0
H181	C18	O17	H182	234.7	240.0
H181	C18	O17	H183	109.4	119.9
H182	C18	O17	H183	234.7	240.0
O17	C18	H181	H182	139.2	120.1
O17	C18	H181	H183	249.6	240.0
H182	C18	H181	H183	110.4	119.9
O17	C18	H182	H181	234.7	240.0
O17	C18	H182	H183	125.3	120.0
H181	C18	H182	H183	250.6	240.1
O17	C18	H183	H181	110.4	120.0
O17	C18	H183	H182	220.8	239.9
H181	C18	H183	H182	110.4	120.0
C12	N19	C20	H191	180.0	180.0
O21	C20	N19	C22	176.5	179.9
N19	C20	C22	S23	173.1	0.0
N19	C20	C22	C26	354.0	179.6
C12	N19	H191	C20	180.0	180.0
H191	N19	C20	O21	179.1	180.0
H191	N19	C20	C22	2.6	0.0
O21	C20	N19	H191	179.1	180.0
N19	C20	O21	C22	183.3	180.1
O21	C20	C22	S23	356.6	180.1
O21	C20	C22	C26	177.6	359.7
C22	C20	N19	H191	2.6	0.0
N19	C20	C22	O21	176.4	179.9
S23	C22	C20	C26	179.1	180.4
C20	C22	S23	C24	181.4	179.9
C20	C22	C26	C25	178.1	179.8
C20	C22	C26	CL3	359.0	0.4
C20	C22	S23	C26	180.8	179.7
S23	C22	C26	C25	359.0	359.5
S23	C22	C26	CL3	179.9	180.1
C22	S23	C24	C25	359.8	0.0
C22	S23	C24	H241	179.8	180.0
C20	C22	C26	S23	179.1	180.3
C26	C22	S23	C24	0.6	0.3
C24	C25	C26	C22	0.8	0.6
C22	C26	C25	C28	181.0	180.3
C25	C26	C22	CL3	179.1	179.4
C24	S23	C22	C26	0.6	0.3
C25	C24	S23	H241	180.0	180.0
S23	C24	C25	C26	359.7	359.6
S23	C24	C25	C28	179.5	180.0
C22	C26	C25	C24	0.8	0.6
S23	C24	C25	H241	180.0	180.0
C26	C25	C24	C28	180.2	179.6
C24	C25	C26	CL3	180.0	180.0
C24	C25	C28	N29	2.0	360.0
C24	C25	C28	H281	236.7	119.9
C24	C25	C28	H282	127.3	240.0
S23	C24	H241	C25	180.0	180.0
H241	C24	C25	C26	179.7	179.7
H241	C24	C25	C28	359.5	0.0
C22	C26	C25	CL3	180.9	180.6
C26	C25	C24	H241	179.7	179.7
C24	C25	C26	C28	179.8	180.4
C26	C25	C28	N29	181.8	180.3
C26	C25	C28	H281	56.5	300.3
C26	C25	C28	H282	307.1	60.3
C28	C25	C24	H241	359.5	0.0
C24	C25	C28	C26	180.2	179.6
C28	C25	C26	CL3	0.2	359.7
N29	C28	C25	H281	125.3	240.0
N29	C28	C25	H282	234.7	120.0
C25	C28	N29	C31	305.4	90.0
C25	C28	N29	C32	81.3	269.9
H281	C28	C25	H282	109.4	240.0
C22	C26	CL3	C25	179.0	179.4
CL3	C26	C25	C28	0.2	359.7
C25	C28	N29	H281	234.7	120.0
C25	C28	N29	H282	125.3	239.9
H281	C28	N29	H282	250.6	119.9
C31	N29	C28	C32	224.1	180.1
C28	N29	C31	H311	54.7	360.0
C28	N29	C31	H312	180.0	120.0
C28	N29	C31	H313	305.2	240.0
C28	N29	C32	N33	18.3	179.9
C28	N29	C32	O36	197.7	359.8
C25	C28	H281	N29	133.6	240.0
C25	C28	H281	H282	246.8	120.1
N29	C28	H281	H282	113.2	240.1
H281	C28	N29	C31	70.7	330.0
H281	C28	N29	C32	206.6	149.9
C25	C28	H282	N29	226.4	120.0
C25	C28	H282	H281	113.2	239.9
N29	C28	H282	H281	246.8	119.9
H282	C28	N29	C31	180.1	210.1
H282	C28	N29	C32	316.0	30.0
C31	N29	C28	H281	70.7	330.0
C31	N29	C28	H282	180.1	210.1
C28	N29	C31	C32	135.6	179.9
C31	N29	C32	N33	156.1	359.9
C31	N29	C32	O36	335.4	179.7
H311	C31	N29	H312	234.7	240.0
H311	C31	N29	H313	109.5	120.0
H312	C31	N29	H313	234.8	240.0
C32	N29	C28	H281	206.6	149.9
C32	N29	C28	H282	316.0	30.0
C28	N29	C32	C31	222.3	180.1
C32	N29	C31	H311	279.1	180.1
C32	N29	C31	H312	44.4	300.1
C32	N29	C31	H313	169.6	60.1
N33	C32	N29	O36	180.6	180.1
N29	C32	N33	C34	179.1	180.4
N29	C32	O36	C35	180.8	162.5
H311	C31	N29	C32	279.1	180.1
N29	C31	H311	H312	130.1	120.0
N29	C31	H311	H313	245.0	240.0
H312	C31	H311	H313	115.0	120.0
H312	C31	N29	C32	44.4	300.1
N29	C31	H312	H311	234.7	240.0
N29	C31	H312	H313	125.3	120.0
H311	C31	H312	H313	250.5	240.0
H313	C31	N29	C32	169.6	60.1
N29	C31	H313	H311	115.0	120.0
N29	C31	H313	H312	229.9	240.0
H311	C31	H313	H312	115.0	120.0
N29	C32	N33	O36	179.5	179.9
N33	C32	O36	C35	0.2	342.4
C32	N33	C34	C35	0.3	15.1
C32	N33	C34	H341	235.0	133.2
C32	N33	C34	H342	125.5	256.9
N29	C32	O36	N33	180.6	180.1
O36	C32	N33	C34	359.7	0.6
C34	C35	O36	C32	360.0	25.2
C32	O36	C35	H351	125.2	267.1
C32	O36	C35	H352	234.7	143.1
C34	N33	C32	O36	359.7	0.6
C35	C34	N33	H341	125.3	241.9
C35	C34	N33	H342	234.8	118.2
N33	C34	C35	O36	359.9	336.3
N33	C34	C35	H351	234.6	94.6
N33	C34	C35	H352	125.1	218.4
H341	C34	N33	H342	109.5	236.3
C32	O36	C35	C34	360.0	25.2
N33	C34	C35	H341	234.7	118.1
N33	C34	C35	H342	125.2	241.9
H341	C34	C35	H342	250.5	123.7
O36	C35	C34	H351	125.3	241.8
O36	C35	C34	H352	234.8	117.9
H351	C35	C34	H352	109.5	236.1
N33	C34	H341	C35	119.3	247.5
N33	C34	H341	H342	239.7	123.7
C35	C34	H341	H342	120.3	236.2
H341	C34	C35	O36	125.1	218.2
H341	C34	C35	H351	359.9	336.4
H341	C34	C35	H352	250.4	100.3
N33	C34	H342	C35	240.7	112.6
N33	C34	H342	H341	120.3	236.3
C35	C34	H342	H341	239.6	123.7
H342	C34	C35	O36	234.6	94.5
H342	C34	C35	H351	109.4	212.7
H342	C34	C35	H352	359.9	336.6
O36	C35	C34	H341	125.1	218.2
O36	C35	C34	H342	234.6	94.5
C34	C35	O36	H351	234.8	118.1
C34	C35	O36	H352	125.3	242.1
H351	C35	O36	H352	250.5	124.0
H351	C35	C34	H341	359.9	336.4
H351	C35	C34	H342	109.4	212.7
C34	C35	H351	O36	119.6	248.0
C34	C35	H351	H352	239.8	123.9
O36	C35	H351	H352	120.2	236.0
H352	C35	C34	H341	250.4	100.3
H352	C35	C34	H342	359.9	336.6
C34	C35	H352	O36	240.5	111.9
C34	C35	H352	H351	120.2	236.1
O36	C35	H352	H351	239.8	124.2