PDB Chemical Component XK9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XK9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	N7	1.435	1.218
N7	O2	1.419	1.217
N7	C3	1.343	1.480
C3	C2	1.396	1.377
C3	C4	1.394	1.392
C2	C1	1.395	1.389
C4	N1	1.322	1.375
C4	C5	1.400	1.409
N1	C8	1.342	1.381
C8	C7	1.337	1.359
C8	C9	1.530	1.470
C7	C5	1.336	1.416
C5	C6	1.389	1.400
C6	C1	1.388	1.365
C9	O1	1.236	1.216
C9	N2	1.348	1.348
N2	C10	1.356	1.397
C10	C15	1.403	1.391
C10	C11	1.384	1.390
C15	C14	1.403	1.378
C14	C13	1.410	1.397
C13	C12	1.396	1.398
C13	C16	1.401	1.474
C12	C11	1.397	1.378
C16	C17	1.519	1.507
C16	N3	1.330	1.298
N3	N4	1.247	1.401
N4	C18	1.350	1.376
C18	N6	1.326	1.303
C18	N5	1.315	1.376
N5	OBC	1.373	1.416
C2	H2	1.080	1.080
C1	H1	1.080	1.079
N1	HA	1.000	0.970
C7	H7	1.081	1.081
C6	H6	1.080	1.080
N2	HB	1.000	0.970
C15	H15	1.080	1.080
C11	H11	1.080	1.079
C14	H14	1.080	1.079
C12	H12	1.080	1.080
C17	H171	1.100	1.091
C17	H172	1.100	1.091
C17	H173	1.100	1.090
N4	H4	1.000	0.970
N5	H5	1.000	0.970
OBC	HBC	0.950	0.967
N6	H6A	0.999	0.971

Bond Angles for XK9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	N7	O2	117.4	120.0
O3	N7	C3	123.0	119.9
O2	N7	C3	119.6	120.0
N7	C3	C2	119.2	120.1
N7	C3	C4	121.6	120.1
C2	C3	C4	119.2	119.8
C3	C2	C1	120.7	120.7
C3	C2	H2	119.7	119.7
C3	C4	N1	132.6	133.2
C3	C4	C5	120.1	119.4
C2	C1	C6	119.8	120.6
C1	C2	H2	119.7	119.6
C2	C1	H1	120.1	119.7
N1	C4	C5	107.3	107.4
C4	N1	C8	107.4	108.8
C4	N1	HA	126.3	125.6
C4	C5	C7	107.9	106.9
C4	C5	C6	120.2	119.7
N1	C8	C7	110.8	109.1
N1	C8	C9	123.9	125.5
C8	N1	HA	126.3	125.6
C7	C8	C9	125.3	125.4
C8	C7	C5	106.5	107.8
C8	C7	H7	126.7	126.2
C8	C9	O1	118.9	120.0
C8	C9	N2	115.3	119.9
C7	C5	C6	131.8	133.4
C5	C7	H7	126.7	126.1
C5	C6	C1	120.0	119.9
C5	C6	H6	120.0	120.1
C6	C1	H1	120.1	119.7
C1	C6	H6	120.0	120.1
O1	C9	N2	125.7	120.0
C9	N2	C10	125.1	120.0
C9	N2	HB	117.4	120.1
N2	C10	C15	119.3	119.9
N2	C10	C11	122.6	119.9
C10	N2	HB	117.5	120.0
C15	C10	C11	118.0	120.2
C10	C15	C14	121.3	120.1
C10	C15	H15	119.3	120.0
C10	C11	C12	121.0	120.1
C10	C11	H11	119.5	120.0
C15	C14	C13	120.4	119.9
C14	C15	H15	119.4	119.9
C15	C14	H14	119.8	120.1
C14	C13	C12	117.5	119.9
C14	C13	C16	121.0	120.1
C13	C14	H14	119.8	120.0
C12	C13	C16	121.5	120.0
C13	C12	C11	121.8	119.9
C13	C12	H12	119.1	120.1
C13	C16	C17	122.7	120.0
C13	C16	N3	118.5	120.0
C12	C11	H11	119.5	119.9
C11	C12	H12	119.1	120.0
C17	C16	N3	118.7	120.0
C16	C17	H171	109.5	109.5
C16	C17	H172	109.5	109.4
C16	C17	H173	109.5	109.5
C16	N3	N4	124.7	120.0
N3	N4	C18	119.0	120.0
N3	N4	H4	120.5	120.0
N4	C18	N6	123.0	120.0
N4	C18	N5	120.4	120.0
C18	N4	H4	120.5	120.0
N6	C18	N5	116.6	120.0
C18	N6	H6A	111.0	120.0
C18	N5	OBC	119.4	120.0
C18	N5	H5	120.3	120.0
OBC	N5	H5	120.3	120.0
N5	OBC	HBC	109.5	114.0
H171	C17	H172	109.4	109.5
H171	C17	H173	109.5	109.5
H172	C17	H173	109.5	109.5

Torsion Angles for XK9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	N7	O3	C3	181.0	180.3
O3	N7	C3	C2	171.6	360.0
O3	N7	C3	C4	351.0	179.7
O3	N7	O2	C3	179.1	179.7
O2	N7	C3	C2	350.7	179.7
O2	N7	C3	C4	170.0	359.4
O3	N7	C3	O2	181.0	180.3
C2	C3	N7	C4	180.7	180.3
N7	C3	C2	C1	180.2	180.0
N7	C3	C2	H2	0.2	360.0
N7	C3	C4	N1	1.8	0.0
N7	C3	C4	C5	179.9	180.0
N7	C3	C2	C4	179.4	179.7
C2	C3	C4	N1	181.2	179.8
C2	C3	C4	C5	359.3	359.8
C3	C2	C1	C6	359.7	360.0
C1	C2	C3	H2	180.0	180.0
C3	C2	C1	H1	179.7	180.0
N7	C3	C4	C2	180.7	180.3
C4	C3	C2	C1	0.9	0.2
C4	C3	C2	H2	180.9	180.2
N1	C4	C3	C5	181.9	180.0
C3	C4	N1	C8	179.6	180.0
C3	C4	N1	HA	359.6	0.0
C3	C4	C5	C7	181.2	180.0
C3	C4	C5	C6	0.1	0.1
C1	C2	C3	C4	0.9	0.2
C3	C2	C1	H2	180.0	180.0
C5	C6	C1	C2	359.7	359.8
C6	C1	C2	H1	180.0	180.0
C2	C1	C6	H6	179.7	180.0
C3	C4	N1	C5	178.3	180.0
N1	C4	C5	C7	359.8	0.0
N1	C4	C5	C6	178.6	180.0
C4	N1	C8	C7	358.0	360.0
C4	N1	C8	C9	180.5	180.0
C8	N1	C4	HA	180.0	180.0
C3	C4	C5	N1	181.5	180.0
C5	C4	N1	C8	1.3	360.0
C5	C4	N1	HA	181.3	180.0
C8	C7	C5	C4	359.0	360.0
C7	C5	C4	C6	181.2	180.0
C4	C5	C7	H7	179.0	180.1
C4	C5	C6	C1	0.5	0.1
C4	C5	C6	H6	180.4	180.0
C8	N1	C4	C5	1.3	360.0
C4	N1	C8	HA	180.0	180.0
C7	C8	N1	C9	177.5	180.0
N1	C8	C7	C5	1.8	0.0
N1	C8	C7	H7	181.8	179.9
N1	C8	C9	O1	4.9	180.0
N1	C8	C9	N2	183.4	0.0
C4	C5	C7	C8	359.0	360.0
N1	C8	C7	C9	182.5	180.0
C7	C8	N1	HA	178.0	180.0
C7	C8	C9	O1	187.8	359.9
C7	C8	C9	N2	6.2	180.0
C8	C7	C5	C6	180.4	179.9
C5	C7	C8	H7	180.0	180.1
N1	C8	C9	C7	177.1	180.0
C9	C8	N1	HA	0.5	359.9
C9	C8	C7	C5	179.3	180.1
C9	C8	C7	H7	359.3	360.0
O1	C9	C8	N2	181.6	179.9
C8	C9	N2	C10	185.7	174.7
C8	C9	N2	HB	5.7	354.7
C4	C5	C7	C6	178.6	180.0
C5	C7	C8	C9	179.3	180.1
C8	C7	C5	H7	180.0	179.9
C7	C5	C6	C1	179.0	180.2
C7	C5	C6	H6	358.9	0.0
C2	C1	C6	C5	359.7	359.8
C4	C5	C6	C7	181.5	180.0
C6	C5	C7	H7	0.4	0.0
C5	C6	C1	H1	179.7	179.8
C1	C6	C5	H6	180.0	180.1
C6	C1	C2	H2	179.7	180.0
C2	C1	C6	H1	180.0	180.0
C5	C6	C1	H6	180.0	179.9
C8	C9	O1	N2	178.3	180.1
O1	C9	N2	C10	4.0	354.7
O1	C9	N2	HB	184.0	174.8
C8	C9	N2	O1	181.7	179.9
C9	N2	C10	C15	176.9	146.6
C9	N2	C10	C11	0.9	326.4
C10	N2	C9	HB	180.0	180.0
C9	N2	C10	HB	180.0	180.0
C15	C10	N2	C11	176.0	180.2
N2	C10	C15	C14	182.2	180.0
N2	C10	C15	H15	2.2	0.1
N2	C10	C11	C12	177.7	179.7
N2	C10	C11	H11	357.7	359.9
N2	C10	C15	C11	183.8	179.8
C15	C10	N2	HB	356.9	326.5
C15	C10	C11	C12	1.6	359.5
C15	C10	C11	H11	181.6	179.7
C10	C15	C14	C13	0.9	0.0
C14	C15	C10	H15	180.0	180.0
C10	C15	C14	H14	180.9	179.9
N2	C10	C11	C15	176.1	180.2
C11	C10	N2	HB	180.9	146.3
C11	C10	C15	C14	358.4	0.2
C11	C10	C15	H15	178.4	180.3
C13	C12	C11	C10	358.9	0.4
C12	C11	C10	H11	180.0	179.8
C10	C11	C12	H12	178.9	180.3
C14	C15	C10	C11	358.4	0.2
C10	C15	C14	H15	180.0	180.0
C15	C14	C13	C12	359.6	359.9
C15	C14	C13	C16	179.7	180.0
C13	C14	C15	H14	180.0	180.1
C13	C14	C15	H15	181.0	180.0
C15	C14	C13	H14	180.0	179.9
C12	C13	C14	C16	179.9	180.0
C14	C13	C12	C11	0.4	359.8
C14	C13	C12	H12	180.4	180.0
C14	C13	C16	C17	155.9	180.0
C14	C13	C16	N3	335.5	360.0
C10	C11	C12	C13	358.9	0.4
C14	C13	C12	C16	180.1	180.0
C12	C13	C14	H14	179.7	180.0
C12	C13	C16	C17	336.0	360.0
C12	C13	C16	N3	155.5	180.0
C13	C12	C11	H11	178.9	180.3
C11	C12	C13	H12	180.0	179.8
C14	C13	C16	C12	179.9	180.0
C16	C13	C14	H14	359.7	0.1
C16	C13	C12	C11	180.3	179.8
C16	C13	C12	H12	0.3	360.0
C17	C16	C13	N3	180.5	180.0
C13	C16	C17	H171	172.1	90.0
C13	C16	C17	H172	292.1	210.0
C13	C16	C17	H173	52.1	330.0
C13	C16	N3	N4	178.6	180.0
C10	C11	C12	H11	180.0	180.2
C11	C12	C13	C16	180.3	179.8
C13	C12	C11	H12	180.0	180.2
C13	C16	C17	N3	179.5	180.0
C17	C16	N3	N4	358.1	0.0
H171	C17	C16	H172	240.0	240.0
H171	C17	C16	H173	120.0	120.0
H172	C17	C16	H173	240.0	240.0
C13	C16	N3	C17	180.4	180.0
N3	C16	C17	H171	352.6	270.0
N3	C16	C17	H172	112.6	30.0
N3	C16	C17	H173	232.6	150.0
C16	N3	N4	C18	178.5	180.0
C16	N3	N4	H4	358.5	360.0
N3	N4	C18	N6	181.9	360.0
N3	N4	C18	N5	1.4	180.0
C18	N4	N3	H4	180.0	180.1
N3	N4	C18	H4	180.0	179.9
N6	C18	N4	N5	180.5	180.0
N4	C18	N6	H6A	180.0	180.0
N4	C18	N5	OBC	180.1	180.0
N4	C18	N5	H5	0.2	0.0
N4	C18	N6	N5	179.5	180.0
N6	C18	N4	H4	1.9	180.0
N6	C18	N5	OBC	359.7	360.0
N6	C18	N5	H5	179.7	180.0
N4	C18	N5	N6	180.4	180.0
N5	C18	N4	H4	181.4	0.1
N5	C18	N6	H6A	0.5	360.0
OBC	N5	C18	H5	180.0	179.9
C18	N5	OBC	HBC	163.5	180.0
C18	N5	OBC	H5	180.0	180.1
H2	C2	C3	C4	180.9	180.2
C3	C2	H2	C1	180.0	180.0
H2	C2	C1	C6	179.7	180.0
H2	C2	C1	H1	359.7	0.0
C2	C1	H1	C6	180.0	180.0
H1	C1	C2	H2	359.7	0.0
H1	C1	C6	H6	359.7	359.9
HA	N1	C4	C5	181.3	180.0
C4	N1	HA	C8	180.0	180.0
HA	N1	C8	C7	178.0	180.0
HA	N1	C8	C9	0.5	359.9
H7	C7	C8	C9	359.3	360.0
C8	C7	H7	C5	180.0	180.1
H7	C7	C5	C6	0.4	0.0
C5	C6	H6	C1	180.0	180.1
H6	C6	C1	H1	359.7	359.9
C9	N2	HB	C10	180.0	180.0
HB	N2	C10	C15	356.9	326.5
HB	N2	C10	C11	180.9	146.3
H15	C15	C10	C11	178.4	180.3
C10	C15	H15	C14	180.0	180.0
H15	C15	C14	C13	181.0	180.0
H15	C15	C14	H14	1.0	359.9
C10	C11	H11	C12	180.0	179.8
H11	C11	C12	H12	358.9	0.1
C15	C14	H14	C13	180.0	180.1
H14	C14	C15	H15	1.0	359.9
H14	C14	C13	C12	179.7	180.0
H14	C14	C13	C16	359.7	0.1
H12	C12	C13	C16	0.3	360.0
C13	C12	H12	C11	180.0	179.8
H12	C12	C11	H11	358.9	0.1
H171	C17	C16	N3	352.6	270.0
C16	C17	H171	H172	120.0	119.9
C16	C17	H171	H173	240.0	239.9
H172	C17	H171	H173	120.0	120.0
H172	C17	C16	N3	112.6	30.0
C16	C17	H172	H171	240.0	240.0
C16	C17	H172	H173	120.0	120.1
H171	C17	H172	H173	240.0	240.0
H173	C17	C16	N3	232.6	150.0
C16	C17	H173	H171	120.0	120.0
C16	C17	H173	H172	240.0	240.0
H171	C17	H173	H172	120.0	120.0
N3	N4	H4	C18	180.0	180.1
H4	N4	C18	N6	1.9	180.0
H4	N4	C18	N5	181.4	0.1
C18	N5	H5	OBC	180.0	179.9
H5	N5	OBC	HBC	343.5	360.0
HBC	OBC	N5	H5	343.5	360.0
H6A	N6	C18	N5	0.5	360.0