PDB Chemical Component XK3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XK3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 C02 1.488 1.531
C02 C03 1.487 1.507
C03 C04 1.656 1.380
C03 C07 1.548 1.349
C04 C05 1.473 1.336
C05 S06 1.680 1.758
S06 C07 1.541 1.759
C07 C08 1.389 1.477
C08 C09 1.406 1.396
C08 N23 1.372 1.332
C09 N10 1.387 1.320
N10 C11 1.383 1.328
C11 N12 1.423 1.390
C11 C13 1.401 1.393
C13 C14 1.504 1.507
C13 N23 1.382 1.318
C14 C15 1.537 1.530
C14 C22 1.543 1.529
C15 C16 1.519 1.531
C16 C17 1.522 1.530
C17 C18 1.482 1.507
C17 C21 1.538 1.530
C18 O19 1.212 1.209
C18 O20 1.371 1.342
C21 C22 1.529 1.530
C01 H011 1.100 1.090
C01 H012 1.100 1.090
C01 H013 1.100 1.090
C02 H021 1.100 1.090
C02 H022 1.100 1.090
C04 H04 1.080 1.080
C05 H05 1.080 1.081
C09 H09 1.080 1.080
N12 H121 1.000 0.970
N12 H122 1.000 0.970
C14 H14 1.101 1.090
C15 H151 1.100 1.089
C15 H152 1.100 1.090
C22 H221 1.100 1.090
C22 H222 1.100 1.091
C16 H161 1.100 1.090
C16 H162 1.100 1.089
C17 H17 1.100 1.090
C21 H211 1.101 1.090
C21 H212 1.100 1.091
O20 H20 0.950 0.968

Bond Angles for XK3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 C02 C03 114.3 109.5
C02 C01 H011 109.5 109.4
C02 C01 H012 109.5 109.4
C02 C01 H013 109.4 109.5
C01 C02 H021 107.9 109.5
C01 C02 H022 106.8 109.5
C02 C03 C04 125.8 122.7
C02 C03 C07 126.5 122.7
C03 C02 H021 107.9 109.5
C03 C02 H022 106.8 109.5
C04 C03 C07 107.7 114.7
C03 C04 C05 109.0 115.0
C03 C04 H04 125.5 122.4
C03 C07 S06 108.3 109.4
C03 C07 C08 127.9 125.3
C04 C05 S06 107.0 109.8
C05 C04 H04 125.5 122.5
C04 C05 H05 126.5 125.1
C05 S06 C07 108.0 91.0
S06 C05 H05 126.5 125.1
S06 C07 C08 123.8 125.3
C07 C08 C09 122.5 120.0
C07 C08 N23 116.5 120.0
C09 C08 N23 120.8 119.9
C08 C09 N10 118.4 119.9
C08 C09 H09 120.8 120.0
C08 N23 C13 120.4 119.9
C09 N10 C11 121.0 120.1
N10 C09 H09 120.8 120.0
N10 C11 N12 120.8 120.0
N10 C11 C13 119.7 120.1
N12 C11 C13 119.4 120.0
C11 N12 H121 109.5 120.0
C11 N12 H122 109.4 120.0
C11 C13 C14 123.3 120.0
C11 C13 N23 119.6 120.1
C14 C13 N23 117.0 119.9
C13 C14 C15 119.5 109.4
C13 C14 C22 122.1 109.5
C13 C14 H14 86.2 109.5
C15 C14 C22 114.4 109.5
C14 C15 C16 115.1 109.5
C15 C14 H14 105.4 109.4
C14 C15 H151 107.6 109.5
C14 C15 H152 106.3 109.4
C14 C22 C21 113.9 109.5
C22 C14 H14 99.1 109.5
C14 C22 H221 108.0 109.5
C14 C22 H222 107.0 109.5
C15 C16 C17 112.7 109.5
C16 C15 H151 107.7 109.5
C16 C15 H152 106.4 109.4
C15 C16 H161 108.4 109.4
C15 C16 H162 107.6 109.5
C16 C17 C18 118.0 109.4
C16 C17 C21 113.4 109.5
C17 C16 H161 108.4 109.5
C17 C16 H162 107.7 109.5
C16 C17 H17 105.1 109.5
C18 C17 C21 120.1 109.5
C17 C18 O19 119.1 120.0
C17 C18 O20 120.5 120.0
C18 C17 H17 93.2 109.5
C17 C21 C22 113.1 109.5
C21 C17 H17 101.4 109.5
C17 C21 H211 108.3 109.5
C17 C21 H212 107.4 109.5
O19 C18 O20 119.5 120.0
C18 O20 H20 109.5 117.0
C21 C22 H221 108.0 109.5
C21 C22 H222 107.1 109.5
C22 C21 H211 108.3 109.5
C22 C21 H212 107.5 109.5
H011 C01 H012 109.4 109.5
H011 C01 H013 109.5 109.5
H012 C01 H013 109.5 109.5
H021 C02 H022 113.3 109.5
H121 N12 H122 109.5 120.0
H151 C15 H152 114.0 109.5
H221 C22 H222 112.9 109.4
H161 C16 H162 112.0 109.5
H211 C21 H212 112.4 109.4

Torsion Angles for XK3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C01 C02 C03 C04 323.6 261.7
C01 C02 C03 C07 141.0 81.4
C03 C02 C01 H021 240.0 240.0
C03 C02 C01 H022 117.9 120.0
H011 C01 C02 H012 240.0 240.0
H011 C01 C02 H013 120.0 120.0
H012 C01 C02 H013 240.0 240.0
H021 C02 C01 H022 237.9 240.0
C03 C02 C01 H011 23.7 180.0
C03 C02 C01 H012 143.7 300.0
C03 C02 C01 H013 263.7 60.0
C01 C02 C03 H021 120.0 120.0
C01 C02 C03 H022 242.1 240.0
C04 C03 C02 C07 182.6 180.2
C02 C03 C04 C05 177.3 180.0
C02 C03 C04 H04 357.3 0.0
C02 C03 C07 S06 182.8 179.9
C02 C03 C07 C08 3.6 359.9
H021 C02 C03 H022 122.1 120.0
C02 C03 C04 C07 177.8 179.8
C04 C03 C02 H021 203.6 141.7
C04 C03 C02 H022 81.5 21.7
C04 C03 C07 S06 0.6 359.6
C04 C03 C07 C08 181.4 179.7
C03 C04 C05 S06 0.3 0.0
C05 C04 C03 H04 180.0 180.0
C03 C04 C05 H05 180.3 180.0
C02 C03 C07 C04 182.2 180.2
C07 C03 C02 H021 21.0 321.4
C07 C03 C02 H022 258.9 201.4
C07 C03 C04 C05 359.5 0.2
C07 C03 C04 H04 179.5 180.2
C05 S06 C07 C03 359.6 0.3
S06 C07 C03 C08 179.1 179.9
C03 C07 C08 C09 336.7 227.1
C03 C07 C08 N23 161.5 46.8
C05 C04 C03 C07 359.5 0.2
C03 C04 C05 H04 180.0 180.0
C04 C05 S06 C07 0.1 359.8
S06 C05 C04 H05 180.0 180.0
C03 C07 S06 C05 359.6 0.3
S06 C05 C04 H04 180.3 180.0
C04 C05 S06 H05 180.0 180.0
C05 S06 C07 C08 178.7 180.3
C03 C07 S06 C08 180.8 180.1
C07 S06 C05 H05 180.1 179.9
S06 C07 C08 C09 157.7 47.2
S06 C07 C08 N23 342.5 226.9
C03 C07 C08 S06 179.0 179.9
C09 C08 C07 N23 175.2 180.3
C07 C08 C09 N10 181.6 180.0
C07 C08 C09 H09 1.6 360.0
C07 C08 N23 C13 178.7 179.8
C07 C08 C09 N23 185.0 179.7
C09 C08 N23 C13 3.5 359.4
C08 C09 N10 C11 1.6 360.0
N10 C09 C08 H09 180.0 180.1
C07 C08 N23 C09 175.2 180.3
N23 C08 C09 N10 356.5 0.3
N23 C08 C09 H09 176.5 180.3
C11 C13 N23 C08 358.4 0.5
C14 C13 N23 C08 180.5 180.3
N10 C09 C08 N23 356.5 0.3
C08 C09 N10 H09 180.0 179.9
C09 N10 C11 N12 177.0 180.0
C09 N10 C11 C13 0.2 360.0
C11 N10 C09 H09 181.6 180.0
N12 C11 N10 C13 176.8 180.1
N10 C11 N12 H121 348.2 6.3
N10 C11 N12 H122 108.2 186.3
N10 C11 C13 C14 177.5 180.0
N10 C11 C13 N23 359.7 359.8
N10 C11 N12 C13 183.2 179.9
N12 C11 C13 C14 0.6 359.9
N12 C11 C13 N23 182.9 179.8
H121 N12 C11 H122 240.0 180.0
C08 N23 C13 C11 358.4 0.5
N10 C11 C13 N12 176.9 180.1
C13 C11 N12 H121 165.0 186.3
C13 C11 N12 H122 285.0 6.3
C14 C13 C11 N23 177.7 180.2
C11 C13 C14 C15 145.2 113.9
C11 C13 C14 C22 301.4 233.9
C11 C13 C14 H14 39.7 353.9
C08 N23 C13 C14 180.5 180.3
C11 C13 C14 N23 182.2 179.8
C15 C14 C13 C22 203.8 240.0
C13 C14 C15 C16 201.5 180.0
C15 C14 C13 H14 105.5 119.9
C13 C14 C15 H151 321.6 300.0
C13 C14 C15 H152 84.1 60.1
C13 C14 C22 C21 159.5 180.0
C22 C14 C13 H14 261.7 240.0
C13 C14 C22 H221 279.5 300.1
C13 C14 C22 H222 41.4 60.0
C11 C13 N23 C14 177.9 180.2
N23 C13 C14 C15 323.0 294.1
N23 C13 C14 C22 119.2 54.1
N23 C13 C14 H14 217.5 174.1
C15 C14 C13 N23 323.0 294.1
C13 C14 C15 C22 158.0 120.0
C13 C14 C15 H14 265.6 240.0
C15 C14 C22 C21 316.8 300.0
C22 C14 C15 H14 107.7 120.0
C15 C14 C22 H221 76.8 60.0
C15 C14 C22 H222 198.7 180.0
C14 C15 C16 C17 312.5 300.1
C16 C15 C14 H151 240.0 240.0
C16 C15 C14 H152 117.5 119.9
C14 C15 C16 H161 72.6 60.1
C14 C15 C16 H162 193.9 180.0
H151 C15 C14 H152 237.5 240.0
C22 C14 C13 N23 119.2 54.1
C13 C14 C22 C15 202.7 240.0
C13 C14 C22 H14 91.1 120.1
C22 C14 C15 C16 43.6 59.9
C15 C14 C22 H14 248.5 240.0
C22 C14 C15 H151 163.6 180.0
C22 C14 C15 H152 286.1 300.0
C17 C21 C22 C14 47.1 60.0
C21 C22 C14 H221 240.0 240.0
C21 C22 C14 H222 118.1 120.1
C14 C22 C21 H211 287.1 300.0
C14 C22 C21 H212 165.5 180.0
H221 C22 C14 H222 238.1 240.1
C16 C15 C14 C22 43.6 59.9
C16 C15 C14 H14 295.9 299.9
C14 C15 C16 H151 120.0 120.1
C14 C15 C16 H152 242.5 240.1
C15 C16 C17 C18 199.4 180.0
C15 C16 C17 C21 51.3 60.0
C17 C16 C15 H161 240.0 240.0
C17 C16 C15 H162 118.6 120.1
C15 C16 C17 H17 301.5 299.9
H151 C15 C16 H152 122.6 120.0
H161 C16 C15 H162 238.6 240.1
C17 C16 C15 H151 192.5 180.0
C17 C16 C15 H152 70.0 60.0
C15 C16 C17 H161 120.0 119.9
C15 C16 C17 H162 241.4 240.0
C18 C17 C16 C21 148.1 120.0
C16 C17 C18 O19 45.7 0.0
C16 C17 C18 O20 236.6 180.0
C18 C17 C16 H17 257.9 240.1
C16 C17 C21 C22 308.4 300.0
C21 C17 C16 H17 109.8 120.1
C16 C17 C21 H211 68.4 60.0
C16 C17 C21 H212 190.0 180.0
H161 C16 C17 H162 121.4 120.0
C16 C17 C18 C21 214.1 240.0
C18 C17 C16 H161 79.4 60.0
C18 C17 C16 H162 318.0 300.0
C16 C17 C18 H17 109.0 119.9
C18 C17 C21 C22 161.1 180.0
C21 C17 C18 H17 254.9 239.9
C18 C17 C21 H211 281.1 300.1
C18 C17 C21 H212 42.7 60.0
O19 C18 C17 O20 169.1 180.0
C17 C18 O20 H20 169.1 180.0
C14 C22 C21 C17 47.1 60.0
C16 C17 C21 C18 147.3 120.0
C21 C17 C16 H161 291.3 300.0
C21 C17 C16 H162 169.9 180.0
C16 C17 C21 H17 247.9 240.0
C21 C17 C18 O19 191.6 120.0
C21 C17 C18 O20 22.5 300.0
C18 C17 C21 H17 100.6 120.0
C17 C21 C22 H221 287.1 300.0
C17 C21 C22 H222 165.2 180.1
C22 C21 C17 H211 240.0 240.0
C22 C21 C17 H212 118.4 120.0
H211 C21 C17 H212 238.4 240.0
O19 C18 C17 C21 191.6 120.0
C17 C18 O19 O20 190.8 180.0
O19 C18 C17 H17 296.7 240.1
O19 C18 O20 H20 0.0 360.0
O20 C18 C17 C21 22.5 300.0
C17 C18 O20 O19 169.1 180.0
O20 C18 C17 H17 127.6 60.0
C21 C22 C14 H14 68.4 60.0
C14 C22 C21 H221 120.0 120.0
C14 C22 C21 H222 241.9 239.9
C22 C21 C17 H17 60.5 60.0
C17 C21 C22 H211 120.0 120.0
C17 C21 C22 H212 241.6 240.0
H221 C22 C21 H222 121.9 119.9
H211 C21 C22 H212 121.6 120.0
H011 C01 C02 C03 23.7 180.0
C02 C01 H011 H012 120.0 120.0
C02 C01 H011 H013 240.0 240.0
H011 C01 C02 H021 143.7 300.0
H011 C01 C02 H022 265.8 60.0
H012 C01 H011 H013 120.0 120.1
H012 C01 C02 C03 143.7 300.0
C02 C01 H012 H011 240.0 240.0
C02 C01 H012 H013 120.0 120.0
H012 C01 C02 H021 263.7 60.0
H012 C01 C02 H022 25.8 180.0
H011 C01 H012 H013 240.0 240.0
H013 C01 C02 C03 263.7 60.0
C02 C01 H013 H011 120.0 120.0
C02 C01 H013 H012 240.0 240.0
H013 C01 C02 H021 23.7 180.0
H013 C01 C02 H022 145.8 300.0
H011 C01 H013 H012 120.0 120.1
C01 C02 H021 C03 236.1 240.0
H021 C02 C01 H011 143.7 300.0
H021 C02 C01 H012 263.7 60.0
H021 C02 C01 H013 23.7 180.0
C01 C02 H021 H022 118.0 120.0
H021 C02 C03 C04 203.6 141.7
H021 C02 C03 C07 21.0 321.4
C03 C02 H021 H022 242.0 240.0
C01 C02 H022 C03 122.7 120.0
H022 C02 C01 H011 265.8 60.0
H022 C02 C01 H012 25.8 180.0
H022 C02 C01 H013 145.8 300.0
C01 C02 H022 H021 241.3 240.0
H022 C02 C03 C04 81.5 21.7
H022 C02 C03 C07 258.9 201.4
C03 C02 H022 H021 118.7 120.0
H04 C04 C03 C07 179.5 180.2
C03 C04 H04 C05 180.0 180.0
H04 C04 C05 S06 180.3 180.0
H04 C04 C05 H05 0.3 360.0
C04 C05 H05 S06 180.0 180.1
H05 C05 C04 H04 0.3 360.0
H05 C05 S06 C07 180.1 179.9
H09 C09 C08 N23 176.5 180.3
C08 C09 H09 N10 180.0 180.1
H09 C09 N10 C11 181.6 180.0
H121 N12 C11 C13 165.0 186.3
C11 N12 H121 H122 120.0 180.0
H122 N12 C11 C13 285.0 6.3
C11 N12 H122 H121 240.0 180.0
H14 C14 C13 N23 217.5 174.1
C13 C14 H14 C15 119.6 119.9
C13 C14 H14 C22 238.1 239.9
C15 C14 H14 C22 118.5 120.0
H14 C14 C15 C16 295.9 299.9
H14 C14 C15 H151 55.9 60.0
H14 C14 C15 H152 178.4 180.0
H14 C14 C22 C21 68.4 60.0
H14 C14 C22 H221 188.4 180.0
H14 C14 C22 H222 310.3 299.9
H151 C15 C14 C22 163.6 180.0
C14 C15 H151 C16 235.4 240.0
H151 C15 C14 H14 55.9 60.0
C14 C15 H151 H152 117.7 120.0
H151 C15 C16 C17 192.5 180.0
C16 C15 H151 H152 242.3 240.1
H151 C15 C16 H161 312.6 300.0
H151 C15 C16 H162 74.0 59.9
H152 C15 C14 C22 286.1 300.0
C14 C15 H152 C16 123.1 119.9
H152 C15 C14 H14 178.4 180.0
C14 C15 H152 H151 241.6 239.9
H152 C15 C16 C17 70.0 60.0
C16 C15 H152 H151 118.5 120.0
H152 C15 C16 H161 190.0 180.0
H152 C15 C16 H162 311.4 299.9
C14 C22 H221 C21 236.4 240.0
H221 C22 C14 H14 188.4 180.0
C14 C22 H221 H222 118.2 120.0
C21 C22 H221 H222 241.8 240.0
H221 C22 C21 H211 167.1 179.9
H221 C22 C21 H212 45.5 60.0
C14 C22 H222 C21 122.5 120.1
H222 C22 C14 H14 310.3 299.9
C14 C22 H222 H221 241.2 240.0
C21 C22 H222 H221 118.8 120.0
H222 C22 C21 H211 45.2 60.0
H222 C22 C21 H212 283.6 300.1
C15 C16 H161 C17 237.3 240.0
H161 C16 C15 H151 312.6 300.0
H161 C16 C15 H152 190.0 180.0
C15 C16 H161 H162 118.6 119.9
H161 C16 C17 C18 79.4 60.0
H161 C16 C17 C21 291.3 300.0
C17 C16 H161 H162 241.3 239.9
H161 C16 C17 H17 181.5 180.0
C15 C16 H162 C17 121.8 120.0
H162 C16 C15 H151 74.0 59.9
H162 C16 C15 H152 311.4 299.9
C15 C16 H162 H161 240.9 240.1
H162 C16 C17 C18 318.0 300.0
H162 C16 C17 C21 169.9 180.0
C17 C16 H162 H161 119.1 120.1
H162 C16 C17 H17 60.1 59.9
C16 C17 H17 C18 239.9 240.1
C16 C17 H17 C21 118.3 120.0
H17 C17 C16 H161 181.5 180.0
H17 C17 C16 H162 60.1 59.9
C18 C17 H17 C21 238.4 240.0
H17 C17 C18 O19 296.7 240.1
H17 C17 C18 O20 127.6 60.0
H17 C17 C21 C22 60.5 60.0
H17 C17 C21 H211 180.5 180.0
H17 C17 C21 H212 302.1 300.0
C17 C21 H211 C22 237.0 240.0
H211 C21 C17 H17 180.5 180.0
C17 C21 H211 H212 118.5 120.0
H211 C21 C22 H221 167.1 179.9
H211 C21 C22 H222 45.2 60.0
C22 C21 H211 H212 241.5 240.0
C17 C21 H212 C22 122.0 120.0
H212 C21 C17 H17 302.1 300.0
C17 C21 H212 H211 241.0 240.0
H212 C21 C22 H221 45.5 60.0
H212 C21 C22 H222 283.6 300.1
C22 C21 H212 H211 119.0 120.0