PDB Chemical Component XJ1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XJ1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C3	C4	1.544	1.530
C3	C2	1.545	1.530
C4	C5	1.539	1.530
C5	N8	1.480	1.469
C5	C6	1.528	1.529
C6	C7	1.543	1.530
C7	C2	1.529	1.531
C2	N1	1.485	1.465
N1	C9	1.339	1.390
C9	N10	1.349	1.326
C9	C14	1.398	1.394
N10	C11	1.356	1.330
C14	N13	1.332	1.319
N13	C12	1.344	1.322
C12	C11	1.401	1.393
C11	C15	1.420	1.483
C15	C16	1.397	1.390
C15	C20	1.397	1.395
C16	C17	1.394	1.396
C20	C19	1.410	1.382
C19	C18	1.395	1.380
C18	C17	1.396	1.399
C17	C21	1.401	1.473
C21	C22	1.397	1.348
C22	C23	1.404	1.463
C23	O25	1.240	1.216
C23	O24	1.259	1.349
C3	H31C	1.100	1.090
C3	H32C	1.100	1.090
C4	H41C	1.100	1.091
C4	H42C	1.100	1.090
C2	H2	1.100	1.089
C5	H5	1.100	1.091
N8	H81N	1.000	1.009
N8	H82N	1.000	1.009
C6	H61C	1.100	1.090
C6	H62C	1.100	1.090
C7	H71C	1.100	1.089
C7	H72C	1.100	1.091
N1	H1	1.000	0.971
C14	H14	1.080	1.080
C12	H12	1.080	1.080
C16	H16	1.080	1.080
C20	H20	1.080	1.080
C19	H19	1.080	1.080
C18	H18	1.080	1.080
C21	H21	1.081	1.080
C22	H22	1.080	1.081
O24	H24	0.950	0.967

Bond Angles for XJ1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C3	C2	110.2	109.4
C3	C4	C5	111.0	109.5
C4	C3	H31C	109.2	109.5
C4	C3	H32C	109.1	109.5
C3	C4	H41C	108.9	109.4
C3	C4	H42C	108.6	109.5
C3	C2	C7	108.9	109.5
C3	C2	N1	110.2	109.5
C2	C3	H31C	109.2	109.5
C2	C3	H32C	109.0	109.4
C3	C2	H2	111.3	109.5
C4	C5	N8	111.7	109.5
C4	C5	C6	108.3	109.4
C5	C4	H41C	109.0	109.4
C5	C4	H42C	108.6	109.5
C4	C5	H5	109.1	109.5
N8	C5	C6	110.6	109.5
N8	C5	H5	106.8	109.5
C5	N8	H81N	109.5	111.0
C5	N8	H82N	109.4	111.0
C5	C6	C7	112.7	109.5
C6	C5	H5	110.3	109.4
C5	C6	H61C	108.4	109.5
C5	C6	H62C	107.7	109.5
C6	C7	C2	110.9	109.5
C7	C6	H61C	108.4	109.4
C7	C6	H62C	107.7	109.5
C6	C7	H71C	109.0	109.5
C6	C7	H72C	108.7	109.5
C7	C2	N1	114.6	109.5
C7	C2	H2	106.6	109.5
C2	C7	H71C	109.0	109.5
C2	C7	H72C	108.7	109.4
C2	N1	C9	131.9	120.0
N1	C2	H2	105.2	109.4
C2	N1	H1	102.6	120.0
N1	C9	N10	121.5	120.1
N1	C9	C14	119.4	120.1
C9	N1	H1	102.6	120.0
N10	C9	C14	119.0	119.9
C9	N10	C11	121.8	119.8
C9	C14	N13	119.8	120.2
C9	C14	H14	120.1	119.9
N10	C11	C12	118.0	119.9
N10	C11	C15	118.9	120.1
C14	N13	C12	121.4	120.2
N13	C14	H14	120.1	120.0
N13	C12	C11	120.1	120.1
N13	C12	H12	120.0	120.0
C12	C11	C15	123.0	120.0
C11	C12	H12	119.9	120.0
C11	C15	C16	118.4	120.1
C11	C15	C20	123.6	120.0
C16	C15	C20	117.9	119.9
C15	C16	C17	122.5	119.7
C15	C16	H16	118.7	120.2
C15	C20	C19	120.5	120.2
C15	C20	H20	119.7	119.9
C16	C17	C18	118.9	119.8
C16	C17	C21	120.5	120.1
C17	C16	H16	118.8	120.1
C20	C19	C18	120.1	120.3
C19	C20	H20	119.7	119.9
C20	C19	H19	119.9	119.9
C19	C18	C17	120.1	120.1
C18	C19	H19	120.0	119.8
C19	C18	H18	120.0	120.0
C18	C17	C21	120.6	120.1
C17	C18	H18	120.0	120.0
C17	C21	C22	126.0	120.0
C17	C21	H21	117.0	120.0
C21	C22	C23	120.6	120.0
C22	C21	H21	117.0	120.0
C21	C22	H22	119.7	120.0
C22	C23	O25	116.8	120.0
C22	C23	O24	120.4	120.0
C23	C22	H22	119.7	120.0
O25	C23	O24	122.8	120.0
C23	O24	H24	109.5	114.1
H31C	C3	H32C	110.1	109.5
H41C	C4	H42C	110.7	109.4
H81N	N8	H82N	109.5	111.0
H61C	C6	H62C	112.0	109.5
H71C	C7	H72C	110.6	109.5

Torsion Angles for XJ1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C3	C2	C7	301.2	300.0
C4	C3	C2	N1	174.8	180.0
C2	C3	C4	H31C	240.0	240.0
C2	C3	C4	H32C	119.7	120.0
C4	C3	C2	H2	58.4	60.0
C3	C4	C5	N8	180.5	180.0
C3	C4	C5	C6	302.5	300.0
C5	C4	C3	H41C	240.0	240.0
C5	C4	C3	H42C	119.3	120.1
C3	C4	C5	H5	62.6	59.9
H31C	C3	C4	H32C	239.7	239.9
H41C	C4	C3	H42C	239.3	240.0
C2	C3	C4	C5	60.4	60.0
C4	C3	C2	H31C	120.0	120.0
C4	C3	C2	H32C	240.3	240.0
C2	C3	C4	H41C	180.3	180.0
C2	C3	C4	H42C	301.0	300.0
C6	C7	C2	C3	56.8	60.0
C7	C2	C3	N1	126.4	120.0
C7	C2	C3	H2	242.8	240.0
C3	C2	C7	H71C	296.8	300.0
C3	C2	C7	H72C	176.2	180.0
C3	C2	N1	C9	127.5	205.0
N1	C2	C3	H2	116.3	120.0
C3	C2	N1	H1	247.5	25.0
H31C	C3	C2	H32C	120.3	120.0
C5	C4	C3	C2	60.4	60.0
C5	C4	C3	H31C	180.3	180.0
C5	C4	C3	H32C	300.7	300.1
C3	C4	C5	H41C	120.0	120.0
C3	C4	C5	H42C	240.6	239.9
N8	C5	C4	C6	238.0	240.0
N8	C5	C4	H5	117.9	120.0
C4	C5	N8	H81N	216.8	180.0
C4	C5	N8	H82N	336.8	303.9
C4	C5	C6	C7	56.1	60.0
C6	C5	C4	H5	239.9	240.1
C4	C5	C6	H61C	176.2	180.0
C4	C5	C6	H62C	297.5	300.0
H41C	C4	C5	H42C	120.7	119.9
C4	C5	N8	C6	120.7	120.0
N8	C5	C4	H41C	60.5	60.0
N8	C5	C4	H42C	299.8	300.0
C4	C5	N8	H5	240.8	240.0
N8	C5	C6	C7	178.8	180.0
C6	C5	N8	H5	120.1	120.0
N8	C5	C6	H61C	298.8	300.0
N8	C5	C6	H62C	60.2	60.0
H81N	N8	C5	H82N	240.0	236.1
C4	C5	C6	N8	237.3	240.0
C6	C5	C4	H41C	182.5	180.0
C6	C5	C4	H42C	61.8	60.1
C4	C5	C6	H5	119.4	119.9
N8	C5	C6	H5	242.1	240.0
C6	C5	N8	H81N	96.1	60.0
C6	C5	N8	H82N	216.1	183.9
C5	C6	C7	C2	302.7	300.0
C7	C6	C5	H61C	240.0	240.0
C7	C6	C5	H62C	118.6	120.0
C5	C6	C7	H71C	62.7	60.0
C5	C6	C7	H72C	183.3	180.0
H61C	C6	C5	H62C	238.6	240.0
C3	C2	C7	C6	56.8	60.0
C7	C6	C5	H5	296.8	300.0
C5	C6	C7	H61C	120.0	120.0
C5	C6	C7	H62C	241.4	239.9
C6	C7	C2	N1	180.6	180.0
C6	C7	C2	H2	296.6	300.0
C2	C7	C6	H71C	240.0	240.0
C2	C7	C6	H72C	119.4	120.0
H61C	C6	C7	H62C	121.4	120.0
H71C	C7	C6	H72C	239.4	240.0
C3	C2	C7	N1	236.2	240.0
C7	C2	C3	H31C	181.2	180.0
C7	C2	C3	H32C	60.9	60.0
C3	C2	C7	H2	120.2	120.0
C2	C7	C6	H61C	182.7	180.0
C2	C7	C6	H62C	61.3	60.0
C6	C7	C2	H71C	120.0	120.0
C6	C7	C2	H72C	240.6	240.0
C7	C2	N1	C9	4.4	85.0
N1	C2	C7	H2	244.1	240.0
C7	C2	N1	H1	124.4	265.0
H71C	C7	C2	H72C	120.6	120.0
C3	C2	N1	C7	123.1	120.0
N1	C2	C3	H31C	54.8	60.0
N1	C2	C3	H32C	294.5	300.0
C3	C2	N1	H2	239.9	240.0
C7	C2	N1	H2	116.7	120.0
N1	C2	C7	H71C	60.6	60.0
N1	C2	C7	H72C	300.0	300.0
C2	N1	C9	N10	305.4	180.0
C2	N1	C9	C14	129.6	359.7
C9	N1	C2	H1	240.0	180.0
C9	N1	C2	H2	247.6	325.0
C2	N1	C9	H1	120.0	180.0
N10	C9	N1	C14	175.7	180.3
N1	C9	N10	C11	183.2	180.0
N1	C9	C14	N13	177.1	180.1
N1	C9	C14	H14	357.0	360.0
N1	C9	N10	C14	184.2	179.7
N10	C9	N1	H1	185.4	0.0
N10	C9	C14	N13	1.2	359.8
N10	C9	C14	H14	181.2	179.7
C9	N10	C11	C12	359.7	359.9
C9	N10	C11	C15	182.7	179.9
N1	C9	C14	N10	175.8	180.3
C14	C9	N1	H1	9.6	179.7
C14	C9	N10	C11	358.9	0.3
C9	C14	N13	C12	0.1	359.9
N13	C14	C9	H14	180.0	180.1
C11	N10	C9	C14	358.9	0.3
N13	C12	C11	N10	1.7	359.8
C12	C11	N10	C15	176.9	180.0
N10	C11	C12	H12	181.7	180.1
N10	C11	C15	C16	15.8	185.0
N10	C11	C15	C20	193.5	4.7
C9	C14	N13	H14	180.0	179.9
C14	N13	C12	C11	358.4	0.3
C14	N13	C12	H12	178.4	180.0
N10	C11	C12	N13	1.7	359.8
C12	N13	C14	H14	180.2	180.0
N13	C12	C11	C15	178.5	179.8
C11	C12	N13	H12	180.0	180.3
N10	C11	C12	C15	183.2	180.0
N13	C12	C11	H12	180.0	179.7
C12	C11	C15	C16	199.1	5.0
C12	C11	C15	C20	16.7	184.7
N10	C11	C15	C12	176.8	180.0
C15	C11	C12	H12	358.5	0.1
C16	C15	C11	C20	182.4	180.2
C11	C15	C16	C17	179.4	180.0
C11	C15	C16	H16	359.4	0.0
C11	C15	C20	C19	181.7	180.0
C11	C15	C20	H20	1.7	0.0
C11	C15	C16	C20	177.8	179.8
C16	C15	C20	C19	359.4	359.8
C16	C15	C20	H20	179.4	179.8
C15	C16	C17	C18	357.8	0.1
C15	C16	C17	C21	181.0	180.0
C17	C16	C15	H16	180.0	179.9
C11	C15	C20	C16	182.3	180.2
C20	C15	C16	C17	1.6	0.2
C20	C15	C16	H16	181.6	180.3
C15	C20	C19	C18	0.2	360.0
C19	C20	C15	H20	180.0	180.0
C15	C20	C19	H19	180.2	180.0
C17	C16	C15	C20	1.6	0.2
C15	C16	C17	H16	180.0	180.1
C19	C18	C17	C16	1.7	359.7
C18	C17	C16	C21	176.8	180.1
C16	C17	C18	H18	181.7	180.0
C16	C17	C21	C22	329.9	180.1
C16	C17	C21	H21	149.9	360.0
C15	C20	C19	H20	180.0	180.0
C20	C19	C18	C17	359.2	0.3
C18	C19	C20	H19	180.0	180.0
C20	C19	C18	H18	179.2	180.0
C16	C17	C18	C19	1.7	359.7
C18	C19	C20	H20	180.2	180.0
C20	C19	C18	H19	180.0	180.0
C19	C18	C17	C21	178.5	179.7
C17	C18	C19	H18	180.0	180.3
C16	C17	C18	C21	183.2	179.9
C18	C17	C16	H16	177.8	180.0
C17	C18	C19	H19	179.2	180.3
C19	C18	C17	H18	180.0	179.7
C18	C17	C21	C22	153.2	0.0
C18	C17	C21	H21	333.2	179.9
C16	C17	C21	C18	176.7	180.1
C21	C17	C16	H16	1.1	359.9
C21	C17	C18	H18	358.5	0.1
C17	C21	C22	C23	178.5	180.0
C22	C21	C17	H21	180.0	180.1
C17	C21	C22	H22	358.5	360.0
C17	C21	C22	H21	180.0	179.9
C21	C22	C23	O25	179.4	359.9
C21	C22	C23	O24	358.3	180.0
C23	C22	C21	H22	180.0	180.0
C23	C22	C21	H21	358.5	0.1
C21	C22	C23	H22	180.0	180.0
O25	C23	C22	O24	181.1	179.9
C22	C23	O24	H24	181.2	180.0
C22	C23	O25	O24	178.8	180.1
O25	C23	C22	H22	359.4	180.0
O25	C23	O24	H24	0.0	0.0
C22	C23	O24	O25	181.2	179.9
O24	C23	C22	H22	178.3	0.0
C4	C3	H31C	C2	239.4	240.1
H31C	C3	C4	C5	180.3	180.0
C4	C3	H31C	H32C	119.7	120.1
H31C	C3	C4	H41C	300.3	300.0
H31C	C3	C4	H42C	61.0	59.9
H31C	C3	C2	C7	181.2	180.0
H31C	C3	C2	N1	54.8	60.0
C2	C3	H31C	H32C	240.3	240.0
H31C	C3	C2	H2	298.4	300.0
C4	C3	H32C	C2	120.4	119.9
H32C	C3	C4	C5	300.7	300.1
C4	C3	H32C	H31C	240.2	239.9
H32C	C3	C4	H41C	60.7	60.0
H32C	C3	C4	H42C	181.3	180.0
H32C	C3	C2	C7	60.9	60.0
H32C	C3	C2	N1	294.5	300.0
C2	C3	H32C	H31C	119.8	120.0
H32C	C3	C2	H2	178.1	180.0
H41C	C4	C3	C2	180.3	180.0
C3	C4	H41C	C5	238.8	240.0
H41C	C4	C3	H31C	300.3	300.0
H41C	C4	C3	H32C	60.7	60.0
C3	C4	H41C	H42C	119.4	120.0
H41C	C4	C5	N8	60.5	60.0
H41C	C4	C5	C6	182.5	180.0
C5	C4	H41C	H42C	240.6	240.0
H41C	C4	C5	H5	302.6	299.9
H42C	C4	C3	C2	301.0	300.0
C3	C4	H42C	C5	120.8	120.1
H42C	C4	C3	H31C	61.0	59.9
H42C	C4	C3	H32C	181.3	180.0
C3	C4	H42C	H41C	240.4	240.0
H42C	C4	C5	N8	299.8	300.0
H42C	C4	C5	C6	61.8	60.1
C5	C4	H42C	H41C	119.6	119.9
H42C	C4	C5	H5	181.9	180.0
C3	C2	H2	C7	241.4	240.0
C3	C2	H2	N1	119.3	120.0
H2	C2	C3	H31C	298.4	300.0
H2	C2	C3	H32C	178.1	180.0
C7	C2	H2	N1	237.9	240.0
H2	C2	C7	H71C	176.6	179.9
H2	C2	C7	H72C	56.0	60.0
H2	C2	N1	C9	247.6	325.0
H2	C2	N1	H1	7.6	145.0
C4	C5	H5	N8	120.9	120.0
C4	C5	H5	C6	241.1	240.1
H5	C5	C4	H41C	302.6	299.9
H5	C5	C4	H42C	181.9	180.0
N8	C5	H5	C6	120.2	120.0
H5	C5	N8	H81N	336.1	300.0
H5	C5	N8	H82N	96.1	63.9
H5	C5	C6	C7	296.8	300.0
H5	C5	C6	H61C	56.8	60.0
H5	C5	C6	H62C	178.2	180.0
H81N	N8	C5	C6	96.1	60.0
H81N	N8	C5	H5	336.1	300.0
C5	N8	H81N	H82N	120.0	123.9
H82N	N8	C5	C6	216.1	183.9
H82N	N8	C5	H5	96.1	63.9
C5	N8	H82N	H81N	240.0	236.1
C5	C6	H61C	C7	237.3	240.0
H61C	C6	C5	H5	56.8	60.0
C5	C6	H61C	H62C	118.7	120.0
H61C	C6	C7	C2	182.7	180.0
C7	C6	H61C	H62C	241.3	240.0
H61C	C6	C7	H71C	302.7	300.0
H61C	C6	C7	H72C	63.3	60.0
C5	C6	H62C	C7	121.8	120.1
H62C	C6	C5	H5	178.2	180.0
C5	C6	H62C	H61C	240.9	240.0
H62C	C6	C7	C2	61.3	60.0
C7	C6	H62C	H61C	119.1	119.9
H62C	C6	C7	H71C	181.3	180.0
H62C	C6	C7	H72C	301.9	300.1
C6	C7	H71C	C2	238.9	240.0
H71C	C7	C6	H61C	302.7	300.0
H71C	C7	C6	H62C	181.3	180.0
C6	C7	H71C	H72C	119.4	120.0
H71C	C7	C2	N1	60.6	60.0
H71C	C7	C2	H2	176.6	179.9
C2	C7	H71C	H72C	240.5	240.1
C6	C7	H72C	C2	120.8	120.0
H72C	C7	C6	H61C	63.3	60.0
H72C	C7	C6	H62C	301.9	300.1
C6	C7	H72C	H71C	240.4	239.9
H72C	C7	C2	N1	300.0	300.0
H72C	C7	C2	H2	56.0	60.0
C2	C7	H72C	H71C	119.6	120.0
C2	N1	H1	C9	221.3	180.0
H1	N1	C2	H2	7.6	145.0
H1	N1	C9	N10	185.4	0.0
H1	N1	C9	C14	9.6	179.7
C9	C14	H14	N13	180.0	180.1
H14	C14	N13	C12	180.2	180.0
N13	C12	H12	C11	180.0	180.3
H12	C12	C11	C15	358.5	0.1
H16	C16	C15	C20	181.6	180.3
C15	C16	H16	C17	180.0	179.9
H16	C16	C17	C18	177.8	180.0
H16	C16	C17	C21	1.1	359.9
C15	C20	H20	C19	180.0	180.0
H20	C20	C19	C18	180.2	180.0
H20	C20	C19	H19	0.2	360.0
C20	C19	H19	C18	180.0	180.0
H19	C19	C20	H20	0.2	360.0
H19	C19	C18	C17	179.2	180.3
H19	C19	C18	H18	359.2	360.0
C19	C18	H18	C17	180.0	180.3
H18	C18	C19	H19	359.2	360.0
H18	C18	C17	C21	358.5	0.1
C17	C21	H21	C22	180.0	180.1
H21	C21	C22	C23	358.5	0.1
H21	C21	C22	H22	178.5	180.1
C21	C22	H22	C23	180.0	180.0
H22	C22	C21	H21	178.5	180.1
H22	C22	C23	O25	359.4	180.0
H22	C22	C23	O24	178.3	0.0