PDB Chemical Component XIZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XIZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.254 |
1.216 |
| C1 |
O2 |
1.258 |
1.349 |
| C1 |
C2 |
1.403 |
1.465 |
| C2 |
C3 |
1.402 |
1.347 |
| C3 |
C1' |
1.399 |
1.474 |
| C1' |
C2' |
1.400 |
1.402 |
| C1' |
C6' |
1.391 |
1.401 |
| C2' |
C3' |
1.395 |
1.380 |
| C3' |
N4 |
1.332 |
1.318 |
| C5' |
C6' |
1.405 |
1.380 |
| C5' |
N4 |
1.334 |
1.319 |
| O2 |
H2 |
0.950 |
0.967 |
| C2 |
HA |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C2' |
H2' |
1.080 |
1.080 |
| C6' |
H6' |
1.080 |
1.080 |
| C3' |
H3' |
1.080 |
1.080 |
| C5' |
H5' |
1.080 |
1.079 |
Bond Angles for XIZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
O2 |
123.8 |
120.0 |
| O1 |
C1 |
C2 |
117.1 |
120.0 |
| O2 |
C1 |
C2 |
119.2 |
120.0 |
| C1 |
O2 |
H2 |
109.5 |
116.9 |
| C1 |
C2 |
C3 |
121.7 |
120.0 |
| C1 |
C2 |
HA |
119.1 |
120.0 |
| C2 |
C3 |
C1' |
121.8 |
120.0 |
| C3 |
C2 |
HA |
119.1 |
120.0 |
| C2 |
C3 |
H3 |
119.1 |
120.0 |
| C3 |
C1' |
C2' |
121.0 |
120.9 |
| C3 |
C1' |
C6' |
120.4 |
120.9 |
| C1' |
C3 |
H3 |
119.1 |
120.0 |
| C2' |
C1' |
C6' |
118.5 |
118.1 |
| C1' |
C2' |
C3' |
119.6 |
118.9 |
| C1' |
C2' |
H2' |
120.2 |
120.5 |
| C1' |
C6' |
C5' |
119.0 |
119.0 |
| C1' |
C6' |
H6' |
120.5 |
120.5 |
| C2' |
C3' |
N4 |
120.4 |
121.0 |
| C3' |
C2' |
H2' |
120.2 |
120.6 |
| C2' |
C3' |
H3' |
119.8 |
119.5 |
| C3' |
N4 |
C5' |
121.8 |
122.1 |
| N4 |
C3' |
H3' |
119.8 |
119.5 |
| C6' |
C5' |
N4 |
120.7 |
120.9 |
| C5' |
C6' |
H6' |
120.5 |
120.5 |
| C6' |
C5' |
H5' |
119.6 |
119.5 |
| N4 |
C5' |
H5' |
119.7 |
119.6 |
Torsion Angles for XIZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
O1 |
C2 |
180.0 |
180.3 |
| O1 |
C1 |
O2 |
H2 |
0.0 |
360.0 |
| O1 |
C1 |
C2 |
C3 |
179.4 |
0.1 |
| O1 |
C1 |
C2 |
HA |
359.4 |
180.0 |
| O1 |
C1 |
O2 |
C2 |
180.0 |
179.7 |
| O2 |
C1 |
C2 |
C3 |
359.4 |
179.8 |
| O2 |
C1 |
C2 |
HA |
179.4 |
359.7 |
| O1 |
C1 |
C2 |
O2 |
180.0 |
180.3 |
| C2 |
C1 |
O2 |
H2 |
180.0 |
180.3 |
| C1 |
C2 |
C3 |
C1' |
177.1 |
180.0 |
| C3 |
C2 |
C1 |
HA |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
H3 |
357.1 |
359.9 |
| C1 |
C2 |
C3 |
HA |
180.0 |
179.9 |
| C2 |
C3 |
C1' |
C2' |
355.4 |
180.0 |
| C2 |
C3 |
C1' |
C6' |
177.5 |
359.6 |
| C1' |
C3 |
C2 |
H3 |
180.0 |
180.1 |
| C1' |
C3 |
C2 |
HA |
357.1 |
0.1 |
| C2 |
C3 |
C1' |
H3 |
180.0 |
179.9 |
| C2' |
C1' |
C3 |
C6' |
177.9 |
180.3 |
| C3 |
C1' |
C2' |
C3' |
181.3 |
180.0 |
| C3 |
C1' |
C2' |
H2' |
1.3 |
360.0 |
| C3 |
C1' |
C6' |
C5' |
178.9 |
180.0 |
| C3 |
C1' |
C6' |
H6' |
358.9 |
0.0 |
| C3 |
C1' |
C2' |
C6' |
182.1 |
179.7 |
| C2' |
C1' |
C3 |
H3 |
175.4 |
0.0 |
| C2' |
C1' |
C6' |
C5' |
0.9 |
359.7 |
| C2' |
C1' |
C6' |
H6' |
180.9 |
179.7 |
| C1' |
C2' |
C3' |
N4 |
0.1 |
0.0 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H3' |
180.1 |
180.0 |
| C3 |
C1' |
C6' |
C2' |
177.9 |
180.3 |
| C6' |
C1' |
C3 |
H3 |
357.5 |
179.7 |
| C6' |
C1' |
C2' |
C3' |
359.3 |
0.3 |
| C6' |
C1' |
C2' |
H2' |
179.2 |
180.3 |
| C1' |
C6' |
C5' |
N4 |
359.5 |
0.1 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
180.0 |
| C1' |
C6' |
C5' |
H5' |
179.5 |
180.0 |
| C3' |
C2' |
C1' |
C6' |
359.3 |
0.3 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C2' |
C3' |
N4 |
C5' |
0.4 |
359.7 |
| N4 |
C3' |
C2' |
H3' |
180.0 |
180.0 |
| N4 |
C3' |
C2' |
H2' |
180.1 |
180.0 |
| C2' |
C3' |
N4 |
H3' |
180.0 |
180.0 |
| C6' |
C5' |
N4 |
C3' |
359.8 |
0.2 |
| C3' |
N4 |
C5' |
H5' |
179.9 |
180.3 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.0 |
| C3' |
N4 |
C5' |
C6' |
359.8 |
0.2 |
| N4 |
C5' |
C6' |
H5' |
180.0 |
180.1 |
| C5' |
N4 |
C3' |
H3' |
180.4 |
179.7 |
| N4 |
C5' |
C6' |
H6' |
179.5 |
180.1 |
| C6' |
C5' |
N4 |
H5' |
180.0 |
179.9 |
| H2 |
O2 |
C1 |
C2 |
180.0 |
180.3 |
| C1 |
C2 |
HA |
C3 |
180.0 |
180.1 |
| HA |
C2 |
C3 |
C1' |
357.1 |
0.1 |
| HA |
C2 |
C3 |
H3 |
177.1 |
180.0 |
| C2 |
C3 |
H3 |
C1' |
180.0 |
180.1 |
| H3 |
C3 |
C2 |
HA |
177.1 |
180.0 |
| H3 |
C3 |
C1' |
C2' |
175.4 |
0.0 |
| H3 |
C3 |
C1' |
C6' |
357.5 |
179.7 |
| H2' |
C2' |
C1' |
C6' |
179.2 |
180.3 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
N4 |
180.1 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
0.1 |
360.0 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
180.0 |
| H6' |
C6' |
C5' |
N4 |
179.5 |
180.1 |
| H6' |
C6' |
C5' |
H5' |
359.5 |
360.0 |
| C2' |
C3' |
H3' |
N4 |
180.0 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
0.1 |
360.0 |
| H3' |
C3' |
N4 |
C5' |
180.4 |
179.7 |
| C6' |
C5' |
H5' |
N4 |
180.0 |
180.1 |
| H5' |
C5' |
C6' |
H6' |
359.5 |
360.0 |