PDB Chemical Component XIY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XIY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NG |
CD1 |
1.339 |
1.301 |
| NG |
CD2 |
1.331 |
1.358 |
| CD1 |
NE1 |
1.343 |
1.360 |
| CD1 |
C |
1.529 |
1.507 |
| NE1 |
CE2 |
1.337 |
1.381 |
| CE2 |
CZ2 |
1.393 |
1.388 |
| CE2 |
CD2 |
1.397 |
1.406 |
| CZ2 |
CH2 |
1.402 |
1.379 |
| CH2 |
CZ3 |
1.398 |
1.387 |
| CZ3 |
CE3 |
1.404 |
1.366 |
| CE3 |
CD2 |
1.391 |
1.397 |
| C |
O |
1.428 |
1.429 |
| NE1 |
HE1 |
1.000 |
0.970 |
| C |
HC1 |
1.100 |
1.090 |
| C |
HC2 |
1.100 |
1.090 |
| CZ2 |
HZ2 |
1.080 |
1.080 |
| CH2 |
HH2 |
1.080 |
1.080 |
| CZ3 |
HZ3 |
1.080 |
1.080 |
| CE3 |
HE3 |
1.080 |
1.080 |
| O |
H |
0.949 |
0.966 |
Bond Angles for XIY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD1 |
NG |
CD2 |
108.1 |
109.7 |
| NG |
CD1 |
NE1 |
109.4 |
110.1 |
| NG |
CD1 |
C |
126.0 |
125.0 |
| NG |
CD2 |
CE2 |
107.5 |
106.9 |
| NG |
CD2 |
CE3 |
132.6 |
133.6 |
| NE1 |
CD1 |
C |
124.6 |
124.9 |
| CD1 |
NE1 |
CE2 |
107.9 |
107.3 |
| CD1 |
NE1 |
HE1 |
126.0 |
126.4 |
| CD1 |
C |
O |
109.9 |
109.5 |
| CD1 |
C |
HC1 |
109.3 |
109.5 |
| CD1 |
C |
HC2 |
109.2 |
109.5 |
| NE1 |
CE2 |
CZ2 |
132.4 |
134.2 |
| NE1 |
CE2 |
CD2 |
107.1 |
106.0 |
| CE2 |
NE1 |
HE1 |
126.0 |
126.3 |
| CZ2 |
CE2 |
CD2 |
120.5 |
119.8 |
| CE2 |
CZ2 |
CH2 |
119.8 |
119.7 |
| CE2 |
CZ2 |
HZ2 |
120.1 |
120.2 |
| CE2 |
CD2 |
CE3 |
119.9 |
119.5 |
| CZ2 |
CH2 |
CZ3 |
119.7 |
120.4 |
| CH2 |
CZ2 |
HZ2 |
120.1 |
120.2 |
| CZ2 |
CH2 |
HH2 |
120.1 |
119.8 |
| CH2 |
CZ3 |
CE3 |
120.2 |
120.7 |
| CZ3 |
CH2 |
HH2 |
120.2 |
119.7 |
| CH2 |
CZ3 |
HZ3 |
119.9 |
119.7 |
| CZ3 |
CE3 |
CD2 |
119.9 |
119.9 |
| CE3 |
CZ3 |
HZ3 |
119.9 |
119.6 |
| CZ3 |
CE3 |
HE3 |
120.0 |
120.1 |
| CD2 |
CE3 |
HE3 |
120.1 |
120.1 |
| O |
C |
HC1 |
109.3 |
109.4 |
| O |
C |
HC2 |
109.2 |
109.5 |
| C |
O |
H |
109.5 |
114.0 |
| HC1 |
C |
HC2 |
109.8 |
109.5 |
Torsion Angles for XIY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD1 |
NG |
CD2 |
CE2 |
0.6 |
0.0 |
| CD1 |
NG |
CD2 |
CE3 |
179.7 |
180.2 |
| NE1 |
CD1 |
NG |
C |
179.8 |
180.0 |
| NG |
CD1 |
NE1 |
CE2 |
0.1 |
0.0 |
| NG |
CD1 |
NE1 |
HE1 |
180.2 |
180.0 |
| NG |
CD1 |
C |
O |
186.8 |
180.0 |
| NG |
CD1 |
C |
HC1 |
306.8 |
299.9 |
| NG |
CD1 |
C |
HC2 |
67.0 |
60.0 |
| CD2 |
NG |
CD1 |
NE1 |
359.5 |
360.0 |
| CD2 |
NG |
CD1 |
C |
179.7 |
180.0 |
| NE1 |
CE2 |
CD2 |
NG |
359.4 |
360.0 |
| CZ2 |
CE2 |
CD2 |
NG |
179.6 |
180.0 |
| CE2 |
CD2 |
NG |
CE3 |
181.0 |
179.9 |
| CZ3 |
CE3 |
CD2 |
NG |
180.6 |
180.0 |
| NG |
CD2 |
CE3 |
HE3 |
0.6 |
359.9 |
| NE1 |
CD1 |
NG |
CD2 |
359.5 |
360.0 |
| NG |
CD1 |
NE1 |
C |
180.2 |
180.0 |
| NE1 |
CD1 |
C |
O |
7.1 |
0.0 |
| NE1 |
CD1 |
C |
HC1 |
127.1 |
120.0 |
| NE1 |
CD1 |
C |
HC2 |
247.3 |
240.0 |
| CD1 |
NE1 |
CE2 |
CZ2 |
180.1 |
179.9 |
| CD1 |
NE1 |
CE2 |
CD2 |
0.3 |
0.0 |
| CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| C |
CD1 |
NG |
CD2 |
179.7 |
180.0 |
| NG |
CD1 |
C |
NE1 |
179.7 |
179.9 |
| C |
CD1 |
NE1 |
CE2 |
179.9 |
180.0 |
| C |
CD1 |
NE1 |
HE1 |
359.9 |
-0.0 |
| O |
C |
CD1 |
HC1 |
240.0 |
240.0 |
| O |
C |
CD1 |
HC2 |
119.8 |
120.0 |
| CD1 |
C |
O |
H |
17.4 |
180.0 |
| HC1 |
C |
CD1 |
HC2 |
239.8 |
240.0 |
| NG |
CD2 |
CE2 |
NE1 |
359.4 |
360.0 |
| CE2 |
NE1 |
CD1 |
C |
179.9 |
180.0 |
| CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
180.0 |
| CZ2 |
CE2 |
NE1 |
CD2 |
179.8 |
179.9 |
| NE1 |
CE2 |
CZ2 |
CH2 |
180.1 |
180.1 |
| NE1 |
CE2 |
CZ2 |
HZ2 |
0.0 |
0.1 |
| NE1 |
CE2 |
CD2 |
CE3 |
180.3 |
179.9 |
| NG |
CD2 |
CE2 |
CZ2 |
179.6 |
180.0 |
| NE1 |
CE2 |
CZ2 |
CD2 |
180.2 |
180.1 |
| CZ2 |
CE2 |
NE1 |
HE1 |
0.1 |
359.9 |
| CZ2 |
CE2 |
CD2 |
CE3 |
0.4 |
360.0 |
| CE2 |
CZ2 |
CH2 |
CZ3 |
359.9 |
0.1 |
| CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.0 |
| CE2 |
CZ2 |
CH2 |
HH2 |
179.9 |
180.0 |
| NG |
CD2 |
CE2 |
CE3 |
179.2 |
180.1 |
| NE1 |
CE2 |
CD2 |
CZ2 |
179.8 |
179.9 |
| CD2 |
CE2 |
NE1 |
HE1 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ2 |
CH2 |
359.9 |
360.0 |
| CD2 |
CE2 |
CZ2 |
HZ2 |
179.8 |
180.0 |
| CZ3 |
CE3 |
CD2 |
CE2 |
359.6 |
0.1 |
| CE2 |
CD2 |
CE3 |
HE3 |
179.6 |
180.1 |
| CH2 |
CZ2 |
CE2 |
CD2 |
359.9 |
360.0 |
| CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
CE3 |
0.1 |
360.0 |
| CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
HZ3 |
180.1 |
180.0 |
| CZ3 |
CH2 |
CZ2 |
HZ2 |
179.9 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
CD2 |
0.2 |
360.0 |
| CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
HE3 |
180.2 |
180.0 |
| NG |
CD2 |
CE3 |
CZ3 |
180.6 |
180.0 |
| CE2 |
CD2 |
CE3 |
CZ3 |
359.6 |
0.1 |
| CE3 |
CZ3 |
CH2 |
HH2 |
180.1 |
180.0 |
| CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
180.0 |
| CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
180.0 |
| NG |
CD2 |
CE3 |
CE2 |
181.1 |
179.9 |
| CD2 |
CE3 |
CZ3 |
HZ3 |
180.2 |
179.9 |
| CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.0 |
| CD1 |
C |
O |
HC1 |
120.0 |
120.0 |
| CD1 |
C |
O |
HC2 |
240.2 |
239.9 |
| HC1 |
C |
O |
HC2 |
120.2 |
120.0 |
| HE1 |
NE1 |
CD1 |
C |
359.9 |
-0.0 |
| CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
179.9 |
| HE1 |
NE1 |
CE2 |
CZ2 |
0.1 |
359.9 |
| HE1 |
NE1 |
CE2 |
CD2 |
180.2 |
180.0 |
| CD1 |
C |
HC1 |
O |
239.6 |
240.0 |
| CD1 |
C |
HC1 |
HC2 |
119.8 |
120.0 |
| O |
C |
HC1 |
HC2 |
240.2 |
240.0 |
| HC1 |
C |
O |
H |
257.4 |
60.0 |
| CD1 |
C |
HC2 |
O |
120.3 |
120.1 |
| CD1 |
C |
HC2 |
HC1 |
240.1 |
240.0 |
| O |
C |
HC2 |
HC1 |
119.9 |
119.9 |
| HC2 |
C |
O |
H |
137.2 |
300.1 |
| HZ2 |
CZ2 |
CE2 |
CD2 |
179.8 |
180.0 |
| CE2 |
CZ2 |
HZ2 |
CH2 |
180.0 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
CZ3 |
179.9 |
180.0 |
| HZ2 |
CZ2 |
CH2 |
HH2 |
359.9 |
-0.0 |
| CZ2 |
CH2 |
HH2 |
CZ3 |
180.0 |
180.0 |
| HH2 |
CH2 |
CZ2 |
HZ2 |
359.9 |
-0.0 |
| HH2 |
CH2 |
CZ3 |
CE3 |
180.1 |
180.0 |
| HH2 |
CH2 |
CZ3 |
HZ3 |
0.1 |
0.0 |
| CH2 |
CZ3 |
HZ3 |
CE3 |
180.0 |
180.0 |
| HZ3 |
CZ3 |
CH2 |
HH2 |
0.1 |
0.0 |
| HZ3 |
CZ3 |
CE3 |
CD2 |
180.2 |
179.9 |
| HZ3 |
CZ3 |
CE3 |
HE3 |
0.2 |
359.9 |
| CZ3 |
CE3 |
HE3 |
CD2 |
180.0 |
180.0 |
| HE3 |
CE3 |
CZ3 |
HZ3 |
0.2 |
359.9 |
| H |
O |
C |
HC1 |
257.4 |
60.0 |
| H |
O |
C |
HC2 |
137.2 |
300.1 |