PDB Chemical Component XIM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XIM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.573	1.511
C1	N1	1.389	1.354
C1	N21	1.344	1.301
C2	C3	1.548	1.534
C2	O2	1.413	1.429
C2	H2	1.100	1.090
C3	C4	1.537	1.531
C3	O3	1.413	1.429
C3	H3	1.100	1.090
C4	C5	1.541	1.533
C4	O4	1.413	1.429
C4	H4	1.100	1.090
C5	N1	1.432	1.466
C5	H51	1.100	1.089
C5	H52	1.100	1.089
N1	C17	1.374	1.364
C17	C18	1.351	1.349
C17	H17	1.080	1.079
C18	N21	1.338	1.343
C18	H18	1.080	1.080
O2	HO2	0.950	0.966
O3	HO3	0.950	0.967
O4	HO4	0.949	0.967

Bond Angles for XIM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	121.4	124.0
C2	C1	N21	126.1	127.4
C1	C2	C3	109.2	108.2
C1	C2	O2	115.6	109.7
C1	C2	H2	106.8	109.7
N1	C1	N21	112.5	108.6
C1	N1	C5	128.1	124.8
C1	N1	C17	102.0	107.4
C1	N21	C18	105.8	109.2
C3	C2	O2	109.0	109.7
C3	C2	H2	107.1	109.7
C2	C3	C4	111.5	109.2
C2	C3	O3	109.3	109.5
C2	C3	H3	108.2	109.5
O2	C2	H2	108.8	109.8
C2	O2	HO2	109.5	114.0
C4	C3	O3	109.6	109.5
C4	C3	H3	108.3	109.5
C3	C4	C5	111.7	109.5
C3	C4	O4	109.4	109.5
C3	C4	H4	108.8	109.5
O3	C3	H3	110.0	109.5
C3	O3	HO3	109.5	114.0
C5	C4	O4	107.6	109.4
C5	C4	H4	108.7	109.4
C4	C5	N1	105.7	108.8
C4	C5	H51	110.4	109.6
C4	C5	H52	110.4	109.6
O4	C4	H4	110.5	109.5
C4	O4	HO4	109.5	114.0
N1	C5	H51	110.4	109.6
N1	C5	H52	110.4	109.6
C5	N1	C17	129.9	127.7
H51	C5	H52	109.5	109.7
N1	C17	C18	110.5	106.6
N1	C17	H17	124.8	126.6
C18	C17	H17	124.7	126.7
C17	C18	N21	109.2	108.1
C17	C18	H18	125.4	125.9
N21	C18	H18	125.4	125.9

Torsion Angles for XIM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	C2	N21	180.4	179.6
C2	C1	N1	C5	0.1	0.2
C2	C1	N1	C17	179.6	180.1
C2	C1	N21	C18	180.4	180.0
C3	C2	C1	O2	236.7	240.3
C3	C2	C1	H2	115.5	119.7
C1	C2	C3	C4	322.9	311.2
C1	C2	C3	O3	201.7	191.3
C1	C2	C3	H3	81.9	71.1
O2	C2	C1	H2	238.8	239.3
C1	C2	O2	HO2	180.0	60.0
C2	C1	N1	N21	179.6	180.3
N1	C1	C2	C3	5.9	15.9
N1	C1	C2	O2	129.2	135.6
N1	C1	C2	H2	250.4	256.3
N1	C1	N21	C18	0.0	0.4
C4	C5	N1	C1	24.3	17.1
C1	N1	C5	H51	264.9	257.3
C1	N1	C5	H52	143.7	136.9
C5	N1	C1	C17	180.5	180.1
C1	N1	C17	C18	0.0	0.0
C1	N1	C17	H17	180.1	179.9
C2	C1	N21	N1	180.4	179.6
N21	C1	C2	C3	185.5	196.3
N21	C1	C2	O2	308.8	316.0
N21	C1	C2	H2	70.0	76.7
N21	C1	N1	C5	180.4	179.9
N21	C1	N1	C17	360.0	359.8
C17	C18	N21	C1	360.0	359.6
C1	N21	C18	H18	180.0	179.8
C3	C2	C1	N1	5.9	15.9
C3	C2	C1	N21	185.5	196.3
C1	C2	C3	O2	127.1	119.7
C1	C2	C3	H2	244.7	240.4
O2	C2	C3	H2	117.6	120.7
C3	C2	O2	HO2	303.4	178.8
C4	C3	C2	O3	121.3	119.9
C4	C3	C2	H3	241.0	240.0
C2	C3	C4	C5	66.3	69.5
C2	C3	C4	O4	185.4	189.5
C2	C3	C4	H4	306.2	309.5
O3	C3	C2	H3	119.8	120.1
C2	C3	O3	HO3	180.0	300.0
O2	C2	C1	N1	129.2	135.6
O2	C2	C1	N21	308.8	316.0
C1	C2	O2	C3	236.6	241.3
C1	C2	O2	H2	120.1	120.6
C3	C2	O2	H2	243.5	239.3
O2	C2	C3	C4	195.8	191.5
O2	C2	C3	O3	74.5	71.6
O2	C2	C3	H3	314.8	311.5
H2	C2	C1	N1	250.4	256.3
H2	C2	C1	N21	70.0	76.7
C1	C2	H2	C3	116.9	118.7
C1	C2	H2	O2	234.5	239.4
C3	C2	H2	O2	117.7	120.7
H2	C2	C3	C4	78.2	70.8
H2	C2	C3	O3	317.0	310.9
H2	C2	C3	H3	197.2	190.8
H2	C2	O2	HO2	59.9	299.4
C4	C3	C2	O2	195.8	191.5
C4	C3	C2	H2	78.2	70.8
C2	C3	C4	O3	238.9	240.1
C2	C3	C4	H3	118.9	120.0
O3	C3	C4	H3	240.0	239.9
C4	C3	O3	HO3	57.6	180.3
C5	C4	C3	O4	240.9	240.0
C5	C4	C3	H4	120.1	120.0
C3	C4	C5	N1	304.1	309.6
C3	C4	C5	H51	63.5	69.4
C3	C4	C5	H52	184.6	189.9
O4	C4	C3	H4	239.1	240.0
C3	C4	O4	HO4	180.0	180.0
O3	C3	C2	O2	74.5	71.6
O3	C3	C2	H2	317.0	310.9
C2	C3	O3	C4	122.4	119.7
C2	C3	O3	H3	241.4	239.9
C4	C3	O3	H3	119.0	120.1
O3	C3	C4	C5	187.4	189.4
O3	C3	C4	O4	306.4	309.4
O3	C3	C4	H4	67.3	69.4
H3	C3	C2	O2	314.8	311.5
H3	C3	C2	H2	197.2	190.8
C2	C3	H3	C4	239.0	240.2
C2	C3	H3	O3	119.3	120.1
C4	C3	H3	O3	240.3	239.9
H3	C3	C4	C5	307.4	309.6
H3	C3	C4	O4	66.5	69.5
H3	C3	C4	H4	187.3	189.6
H3	C3	O3	HO3	298.6	60.1
C1	N1	C5	C4	24.3	17.1
C5	C4	C3	O3	187.4	189.4
C5	C4	C3	H3	307.4	309.6
C3	C4	C5	O4	120.1	120.0
C3	C4	C5	H4	239.9	239.9
O4	C4	C5	H4	119.8	119.9
C5	C4	O4	HO4	301.5	300.0
N1	C5	C4	H51	240.6	240.2
N1	C5	C4	H52	119.4	119.8
C4	C5	N1	C17	204.9	197.2
H51	C5	C4	H52	238.8	239.5
O4	C4	C3	O3	306.4	309.4
O4	C4	C3	H3	66.5	69.5
C3	C4	O4	C5	238.5	240.0
C3	C4	O4	H4	119.8	120.1
C5	C4	O4	H4	241.4	240.1
O4	C4	C5	N1	184.0	189.6
O4	C4	C5	H51	303.4	309.4
O4	C4	C5	H52	64.6	69.8
H4	C4	C3	O3	67.3	69.4
H4	C4	C3	H3	187.3	189.6
C3	C4	H4	C5	121.9	120.0
C3	C4	H4	O4	239.8	239.9
C5	C4	H4	O4	118.0	119.9
H4	C4	C5	N1	64.2	69.7
H4	C4	C5	H51	183.6	189.4
H4	C4	C5	H52	304.8	309.9
H4	C4	O4	HO4	60.2	59.9
C5	N1	C1	N21	180.4	179.9
C1	N1	C5	C17	179.4	179.9
N1	C5	C4	O4	184.0	189.6
N1	C5	C4	H4	64.2	69.7
C4	C5	N1	H51	119.4	119.8
C4	C5	N1	H52	240.6	240.2
H51	C5	N1	H52	121.2	120.4
C5	N1	C17	C18	179.6	179.9
C5	N1	C17	H17	359.6	359.8
H51	C5	C4	O4	303.4	309.4
H51	C5	C4	H4	183.6	189.4
C4	C5	H51	N1	243.5	240.7
C4	C5	H51	H52	121.7	120.4
N1	C5	H51	H52	238.2	239.7
H51	C5	N1	C17	85.5	77.4
H52	C5	C4	O4	64.6	69.8
H52	C5	C4	H4	304.8	309.9
C4	C5	H52	N1	116.5	119.3
C4	C5	H52	H51	238.3	239.6
N1	C5	H52	H51	121.8	120.3
H52	C5	N1	C17	324.3	317.0
C17	N1	C1	N21	360.0	359.8
C1	N1	C17	C5	180.5	180.1
C17	N1	C5	H51	85.5	77.4
C17	N1	C5	H52	324.3	317.0
C18	C17	N1	H17	180.0	180.1
N1	C17	C18	N21	360.0	0.2
N1	C17	C18	H18	180.0	180.0
C1	N21	C18	C17	360.0	359.6
N1	C17	C18	H17	180.0	179.9
N21	C18	C17	H18	180.0	180.2
N1	C17	H17	C18	180.0	180.1
H17	C17	C18	N21	180.0	180.3
H17	C17	C18	H18	360.0	0.1
N21	C18	C17	H17	180.0	180.3
C17	C18	N21	H18	180.0	179.8
H18	C18	C17	H17	360.0	0.1
C17	C18	H18	N21	180.0	180.2
HO2	O2	C2	H2	59.9	299.4
HO3	O3	C3	H3	298.6	60.1
HO4	O4	C4	H4	60.2	59.9