PDB Chemical Component XIF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XIF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.498 |
1.468 |
N1 |
C6 |
1.443 |
1.468 |
N1 |
HN1 |
1.000 |
1.009 |
C2 |
C3 |
1.566 |
1.530 |
C2 |
H21 |
1.101 |
1.090 |
C2 |
H22 |
1.100 |
1.090 |
C3 |
O3 |
1.423 |
1.429 |
C3 |
C4 |
1.548 |
1.531 |
C3 |
H3 |
1.100 |
1.091 |
O3 |
HO3 |
0.950 |
0.967 |
C4 |
O4 |
1.421 |
1.428 |
C4 |
C5 |
1.541 |
1.531 |
C4 |
H4 |
1.100 |
1.090 |
O4 |
HO4 |
0.950 |
0.968 |
C5 |
C6 |
1.499 |
1.531 |
C5 |
H51 |
1.100 |
1.090 |
C5 |
H52 |
1.100 |
1.090 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.090 |
Bond Angles for XIF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
112.2 |
111.3 |
C2 |
N1 |
HN1 |
108.8 |
111.0 |
N1 |
C2 |
C3 |
106.3 |
109.5 |
N1 |
C2 |
H21 |
110.2 |
109.5 |
N1 |
C2 |
H22 |
110.2 |
109.4 |
C6 |
N1 |
HN1 |
108.8 |
111.0 |
N1 |
C6 |
C5 |
109.3 |
109.5 |
N1 |
C6 |
H61 |
109.5 |
109.5 |
N1 |
C6 |
H62 |
109.5 |
109.5 |
C3 |
C2 |
H21 |
110.2 |
109.5 |
C3 |
C2 |
H22 |
110.3 |
109.4 |
C2 |
C3 |
O3 |
111.2 |
109.5 |
C2 |
C3 |
C4 |
109.1 |
109.3 |
C2 |
C3 |
H3 |
107.6 |
109.5 |
H21 |
C2 |
H22 |
109.5 |
109.5 |
O3 |
C3 |
C4 |
111.6 |
109.5 |
O3 |
C3 |
H3 |
109.4 |
109.5 |
C3 |
O3 |
HO3 |
109.5 |
114.0 |
C4 |
C3 |
H3 |
107.8 |
109.6 |
C3 |
C4 |
O4 |
107.6 |
109.5 |
C3 |
C4 |
C5 |
110.5 |
109.1 |
C3 |
C4 |
H4 |
108.2 |
109.5 |
O4 |
C4 |
C5 |
112.3 |
109.5 |
O4 |
C4 |
H4 |
109.9 |
109.6 |
C4 |
O4 |
HO4 |
109.5 |
114.0 |
C5 |
C4 |
H4 |
108.3 |
109.5 |
C4 |
C5 |
C6 |
106.9 |
109.3 |
C4 |
C5 |
H51 |
110.1 |
109.5 |
C4 |
C5 |
H52 |
110.1 |
109.5 |
C6 |
C5 |
H51 |
110.1 |
109.5 |
C6 |
C5 |
H52 |
110.1 |
109.5 |
C5 |
C6 |
H61 |
109.5 |
109.4 |
C5 |
C6 |
H62 |
109.5 |
109.5 |
H51 |
C5 |
H52 |
109.5 |
109.5 |
H61 |
C6 |
H62 |
109.5 |
109.4 |
Torsion Angles for XIF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
HN1 |
239.6 |
235.9 |
C2 |
N1 |
C6 |
C5 |
292.2 |
298.3 |
C2 |
N1 |
C6 |
H61 |
52.2 |
58.3 |
C2 |
N1 |
C6 |
H62 |
172.2 |
178.2 |
C3 |
C2 |
N1 |
H21 |
240.5 |
239.9 |
C3 |
C2 |
N1 |
H22 |
119.5 |
119.9 |
N1 |
C2 |
C3 |
O3 |
180.4 |
180.9 |
N1 |
C2 |
C3 |
C4 |
304.0 |
300.9 |
N1 |
C2 |
C3 |
H3 |
60.7 |
60.9 |
H21 |
C2 |
N1 |
H22 |
239.0 |
240.0 |
C2 |
N1 |
C6 |
HN1 |
120.4 |
124.1 |
C6 |
N1 |
C2 |
C3 |
62.6 |
61.7 |
C6 |
N1 |
C2 |
H21 |
182.1 |
181.8 |
C6 |
N1 |
C2 |
H22 |
303.1 |
301.7 |
C4 |
C5 |
C6 |
N1 |
62.9 |
59.1 |
N1 |
C6 |
C5 |
H51 |
303.3 |
299.2 |
N1 |
C6 |
C5 |
H52 |
182.5 |
179.1 |
C5 |
C6 |
N1 |
H61 |
240.1 |
240.0 |
C5 |
C6 |
N1 |
H62 |
120.0 |
120.1 |
H61 |
C6 |
N1 |
H62 |
239.9 |
240.0 |
C2 |
N1 |
HN1 |
C6 |
237.5 |
235.7 |
HN1 |
N1 |
C2 |
C3 |
183.0 |
185.8 |
HN1 |
N1 |
C2 |
H21 |
302.5 |
305.9 |
HN1 |
N1 |
C2 |
H22 |
63.5 |
65.9 |
HN1 |
N1 |
C6 |
C5 |
171.8 |
174.2 |
HN1 |
N1 |
C6 |
H61 |
291.7 |
294.2 |
HN1 |
N1 |
C6 |
H62 |
51.8 |
54.1 |
C3 |
C2 |
N1 |
C6 |
62.6 |
61.7 |
C3 |
C2 |
N1 |
HN1 |
183.0 |
185.8 |
N1 |
C2 |
C3 |
H21 |
119.5 |
120.1 |
N1 |
C2 |
C3 |
H22 |
240.5 |
240.0 |
H21 |
C2 |
C3 |
H22 |
121.0 |
120.0 |
O3 |
C3 |
C2 |
C4 |
236.5 |
240.0 |
O3 |
C3 |
C2 |
H3 |
119.8 |
120.0 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
300.0 |
C4 |
C3 |
C2 |
H3 |
243.3 |
240.0 |
C2 |
C3 |
C4 |
O4 |
180.1 |
177.5 |
C2 |
C3 |
C4 |
C5 |
57.2 |
57.6 |
C2 |
C3 |
C4 |
H4 |
298.8 |
297.7 |
H21 |
C2 |
N1 |
C6 |
182.1 |
181.8 |
H21 |
C2 |
N1 |
HN1 |
302.5 |
305.9 |
N1 |
C2 |
H21 |
C3 |
242.9 |
239.9 |
N1 |
C2 |
H21 |
H22 |
121.4 |
120.0 |
C3 |
C2 |
H21 |
H22 |
238.5 |
240.1 |
H21 |
C2 |
C3 |
O3 |
60.9 |
60.8 |
H21 |
C2 |
C3 |
C4 |
184.5 |
180.8 |
H21 |
C2 |
C3 |
H3 |
301.1 |
300.8 |
H22 |
C2 |
N1 |
C6 |
303.1 |
301.7 |
H22 |
C2 |
N1 |
HN1 |
63.5 |
65.9 |
N1 |
C2 |
H22 |
C3 |
117.1 |
120.0 |
N1 |
C2 |
H22 |
H21 |
238.6 |
240.0 |
C3 |
C2 |
H22 |
H21 |
121.5 |
120.0 |
H22 |
C2 |
C3 |
O3 |
299.9 |
300.9 |
H22 |
C2 |
C3 |
C4 |
63.4 |
60.8 |
H22 |
C2 |
C3 |
H3 |
180.1 |
180.8 |
O3 |
C3 |
C2 |
H21 |
60.9 |
60.8 |
O3 |
C3 |
C2 |
H22 |
299.9 |
300.9 |
C2 |
C3 |
O3 |
C4 |
122.1 |
119.9 |
C2 |
C3 |
O3 |
H3 |
241.3 |
240.0 |
C4 |
C3 |
O3 |
H3 |
119.2 |
120.1 |
O3 |
C3 |
C4 |
O4 |
303.4 |
297.5 |
O3 |
C3 |
C4 |
C5 |
180.5 |
177.6 |
O3 |
C3 |
C4 |
H4 |
62.1 |
57.7 |
C4 |
C3 |
C2 |
H21 |
184.5 |
180.8 |
C4 |
C3 |
C2 |
H22 |
63.4 |
60.8 |
C2 |
C3 |
C4 |
O3 |
236.7 |
240.0 |
C2 |
C3 |
C4 |
H3 |
116.5 |
120.0 |
O3 |
C3 |
C4 |
H3 |
239.8 |
240.0 |
C4 |
C3 |
O3 |
HO3 |
58.0 |
180.2 |
O4 |
C4 |
C3 |
C5 |
122.9 |
119.9 |
O4 |
C4 |
C3 |
H4 |
241.3 |
239.8 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
118.4 |
119.9 |
C3 |
C4 |
C5 |
C6 |
300.9 |
302.4 |
C3 |
C4 |
C5 |
H51 |
60.5 |
62.3 |
C3 |
C4 |
C5 |
H52 |
181.3 |
182.4 |
H3 |
C3 |
C2 |
H21 |
301.1 |
300.8 |
H3 |
C3 |
C2 |
H22 |
180.1 |
180.8 |
C2 |
C3 |
H3 |
O3 |
120.9 |
120.1 |
C2 |
C3 |
H3 |
C4 |
242.5 |
240.1 |
O3 |
C3 |
H3 |
C4 |
121.6 |
120.1 |
H3 |
C3 |
O3 |
HO3 |
298.7 |
60.1 |
H3 |
C3 |
C4 |
O4 |
63.6 |
57.6 |
H3 |
C3 |
C4 |
C5 |
300.7 |
297.7 |
H3 |
C3 |
C4 |
H4 |
182.3 |
177.8 |
HO3 |
O3 |
C3 |
C4 |
58.0 |
180.2 |
HO3 |
O3 |
C3 |
H3 |
298.7 |
60.1 |
O4 |
C4 |
C3 |
H3 |
63.6 |
57.6 |
C3 |
C4 |
O4 |
C5 |
238.2 |
240.3 |
C3 |
C4 |
O4 |
H4 |
117.6 |
120.1 |
C5 |
C4 |
O4 |
H4 |
239.4 |
239.8 |
O4 |
C4 |
C5 |
C6 |
180.7 |
182.5 |
O4 |
C4 |
C5 |
H51 |
300.3 |
302.4 |
O4 |
C4 |
C5 |
H52 |
61.1 |
62.5 |
N1 |
C6 |
C5 |
C4 |
62.9 |
59.1 |
C5 |
C4 |
C3 |
H3 |
300.7 |
297.7 |
C3 |
C4 |
C5 |
O4 |
120.2 |
119.9 |
C3 |
C4 |
C5 |
H4 |
241.7 |
240.2 |
O4 |
C4 |
C5 |
H4 |
121.5 |
120.3 |
C5 |
C4 |
O4 |
HO4 |
301.8 |
299.6 |
C6 |
C5 |
C4 |
H51 |
240.4 |
240.1 |
C6 |
C5 |
C4 |
H52 |
119.6 |
120.0 |
C4 |
C5 |
C6 |
H61 |
302.9 |
299.2 |
C4 |
C5 |
C6 |
H62 |
182.9 |
179.2 |
H51 |
C5 |
C4 |
H52 |
239.2 |
239.9 |
H4 |
C4 |
C3 |
H3 |
182.3 |
177.8 |
C3 |
C4 |
H4 |
O4 |
242.7 |
239.8 |
C3 |
C4 |
H4 |
C5 |
119.8 |
119.6 |
O4 |
C4 |
H4 |
C5 |
237.0 |
239.8 |
H4 |
C4 |
O4 |
HO4 |
62.4 |
59.9 |
H4 |
C4 |
C5 |
C6 |
59.2 |
62.2 |
H4 |
C4 |
C5 |
H51 |
178.8 |
182.2 |
H4 |
C4 |
C5 |
H52 |
299.6 |
302.3 |
HO4 |
O4 |
C4 |
C5 |
301.8 |
299.6 |
HO4 |
O4 |
C4 |
H4 |
62.4 |
59.9 |
C5 |
C6 |
N1 |
HN1 |
171.8 |
174.2 |
N1 |
C6 |
C5 |
H61 |
120.0 |
120.0 |
N1 |
C6 |
C5 |
H62 |
240.0 |
239.9 |
C6 |
C5 |
C4 |
H4 |
59.2 |
62.2 |
C4 |
C5 |
C6 |
H51 |
119.6 |
120.0 |
C4 |
C5 |
C6 |
H52 |
240.4 |
240.0 |
H51 |
C5 |
C6 |
H52 |
120.8 |
120.0 |
H61 |
C6 |
C5 |
H62 |
120.0 |
120.0 |
H51 |
C5 |
C4 |
H4 |
178.8 |
182.2 |
C4 |
C5 |
H51 |
C6 |
242.4 |
240.2 |
C4 |
C5 |
H51 |
H52 |
121.2 |
120.1 |
C6 |
C5 |
H51 |
H52 |
238.8 |
240.0 |
H51 |
C5 |
C6 |
H61 |
183.3 |
179.2 |
H51 |
C5 |
C6 |
H62 |
63.3 |
59.2 |
H52 |
C5 |
C4 |
H4 |
299.6 |
302.3 |
C4 |
C5 |
H52 |
C6 |
117.6 |
119.9 |
C4 |
C5 |
H52 |
H51 |
238.8 |
239.9 |
C6 |
C5 |
H52 |
H51 |
121.2 |
120.0 |
H52 |
C5 |
C6 |
H61 |
62.5 |
59.2 |
H52 |
C5 |
C6 |
H62 |
302.5 |
299.2 |
H61 |
C6 |
N1 |
HN1 |
291.7 |
294.2 |
N1 |
C6 |
H61 |
C5 |
240.2 |
240.0 |
N1 |
C6 |
H61 |
H62 |
120.1 |
120.0 |
H61 |
C6 |
C5 |
H51 |
183.3 |
179.2 |
H61 |
C6 |
C5 |
H52 |
62.5 |
59.2 |
C5 |
C6 |
H61 |
H62 |
239.9 |
240.0 |
H62 |
C6 |
N1 |
HN1 |
51.8 |
54.1 |
N1 |
C6 |
H62 |
C5 |
119.8 |
120.1 |
N1 |
C6 |
H62 |
H61 |
239.9 |
240.0 |
H62 |
C6 |
C5 |
H51 |
63.3 |
59.2 |
H62 |
C6 |
C5 |
H52 |
302.5 |
299.2 |
C5 |
C6 |
H62 |
H61 |
120.1 |
120.0 |