PDB Chemical Component XH8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XH8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C02 1.446 1.387
C02 C03 1.416 1.403
C02 N22 1.372 1.316
C03 C04 1.389 1.362
C04 C05 1.455 1.410
C05 C06 1.446 1.403
C05 C21 1.373 1.417
C06 C07 1.428 1.363
C07 C08 1.414 1.393
C08 C09 1.496 1.507
C08 C20 1.403 1.361
C09 N10 1.441 1.468
N10 C11 1.437 1.469
C11 C12 1.528 1.530
C12 C13 1.560 1.530
C13 C14 1.595 1.507
C14 C15 1.375 1.387
C14 C19 1.381 1.382
C15 C16 1.398 1.386
C16 C17 1.372 1.382
C17 N18 1.342 1.318
N18 C19 1.345 1.319
C20 C21 1.481 1.405
C21 N22 1.388 1.338
N01 H011 1.000 0.969
N01 H012 1.000 0.970
C03 H03 1.080 1.080
C04 H04 1.080 1.079
C06 H06 1.080 1.080
C07 H07 1.080 1.080
C09 H091 1.100 1.091
C09 H092 1.100 1.090
C20 H20 1.080 1.080
N10 H10 1.000 1.009
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C12 H121 1.100 1.090
C12 H122 1.100 1.090
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C15 H15 1.080 1.080
C19 H19 1.080 1.080
C16 H16 1.080 1.080
C17 H17 1.080 1.080

Bond Angles for XH8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N01 C02 C03 120.5 119.2
N01 C02 N22 118.9 119.3
C02 N01 H011 109.5 120.1
C02 N01 H012 109.4 120.0
C03 C02 N22 120.6 121.5
C02 C03 C04 119.0 119.9
C02 C03 H03 120.5 120.0
C02 N22 C21 121.7 121.3
C03 C04 C05 119.1 118.3
C04 C03 H03 120.5 120.1
C03 C04 H04 120.4 120.9
C04 C05 C06 119.6 121.3
C04 C05 C21 120.3 119.1
C05 C04 H04 120.5 120.8
C06 C05 C21 120.2 119.6
C05 C06 C07 119.7 119.6
C05 C06 H06 120.2 120.2
C05 C21 C20 120.0 119.1
C05 C21 N22 119.4 119.9
C06 C07 C08 120.5 120.8
C07 C06 H06 120.2 120.2
C06 C07 H07 119.7 119.6
C07 C08 C09 120.2 119.4
C07 C08 C20 120.0 121.1
C08 C07 H07 119.7 119.6
C09 C08 C20 119.8 119.5
C08 C09 N10 109.4 109.5
C08 C09 H091 109.5 109.5
C08 C09 H092 109.5 109.5
C08 C20 C21 119.7 119.7
C08 C20 H20 120.2 120.1
C09 N10 C11 109.9 111.1
N10 C09 H091 109.5 109.5
N10 C09 H092 109.5 109.5
C09 N10 H10 109.3 111.0
N10 C11 C12 110.5 109.5
C11 N10 H10 109.4 111.0
N10 C11 H111 109.2 109.4
N10 C11 H112 109.2 109.4
C11 C12 C13 111.6 109.5
C12 C11 H111 109.2 109.5
C12 C11 H112 109.2 109.5
C11 C12 H121 108.9 109.5
C11 C12 H122 109.0 109.5
C12 C13 C14 110.6 109.5
C13 C12 H121 109.0 109.4
C13 C12 H122 108.9 109.4
C12 C13 H131 109.2 109.5
C12 C13 H132 109.2 109.5
C13 C14 C15 120.2 120.4
C13 C14 C19 120.4 120.4
C14 C13 H131 109.2 109.5
C14 C13 H132 109.2 109.5
C15 C14 C19 119.4 119.2
C14 C15 C16 119.3 118.4
C14 C15 H15 120.3 120.8
C14 C19 N18 120.2 120.7
C14 C19 H19 119.9 119.6
C15 C16 C17 119.2 119.2
C16 C15 H15 120.4 120.9
C15 C16 H16 120.4 120.4
C16 C17 N18 120.3 120.8
C17 C16 H16 120.4 120.4
C16 C17 H17 119.8 119.6
C17 N18 C19 121.5 121.8
N18 C17 H17 119.8 119.6
N18 C19 H19 119.9 119.7
C20 C21 N22 120.6 121.0
C21 C20 H20 120.2 120.1
H011 N01 H012 109.5 120.0
H091 C09 H092 109.5 109.4
H111 C11 H112 109.4 109.4
H121 C12 H122 109.4 109.5
H131 C13 H132 109.5 109.4

Torsion Angles for XH8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 C02 N01 N22 180.3 180.3
N01 C02 C03 C04 180.1 180.0
N01 C02 C03 H03 0.1 359.9
N01 C02 N22 C21 180.1 179.7
H011 N01 C02 H012 240.0 180.3
N01 C02 C03 N22 179.7 179.7
C03 C02 N01 H011 180.3 0.0
C03 C02 N01 H012 300.3 179.7
C03 C02 N22 C21 359.8 359.4
C02 C03 C04 C05 359.6 359.9
C04 C03 C02 H03 180.0 180.1
C02 C03 C04 H04 179.6 180.0
N01 C02 N22 C03 180.3 180.3
N22 C02 N01 H011 360.0 179.7
N22 C02 N01 H012 120.0 359.4
N22 C02 C03 C04 0.4 0.4
N22 C02 C03 H03 180.4 180.2
C05 C21 N22 C02 360.0 0.5
C20 C21 N22 C02 179.9 180.3
C04 C03 C02 N22 0.4 0.4
C02 C03 C04 H03 180.0 179.9
C03 C04 C05 C06 180.1 180.1
C03 C04 C05 C21 0.2 0.1
C05 C04 C03 H04 180.0 179.9
C05 C04 C03 H03 179.6 180.0
C03 C04 C05 H04 180.0 180.1
C06 C05 C04 C21 180.0 180.0
C04 C05 C06 C07 179.9 180.0
C04 C05 C06 H06 359.9 0.0
C04 C05 C21 C20 180.1 180.0
C04 C05 C21 N22 0.0 359.7
C04 C05 C06 C21 180.0 180.0
C06 C05 C04 H04 0.1 360.0
C06 C05 C21 C20 0.2 360.0
C06 C05 C21 N22 180.1 179.7
C05 C06 C07 C08 0.1 0.0
C07 C06 C05 H06 180.0 180.0
C05 C06 C07 H07 180.1 180.0
C02 N22 C21 C05 360.0 0.5
C04 C05 C21 C06 180.0 180.0
C21 C05 C04 H04 180.2 180.0
C21 C05 C06 C07 359.9 0.0
C21 C05 C06 H06 179.9 180.0
C08 C20 C21 C05 359.8 360.0
C20 C21 C05 N22 180.1 180.3
C05 C21 C20 H20 179.8 180.1
C07 C06 C05 C21 359.9 0.0
C05 C06 C07 H06 180.0 180.0
C06 C07 C08 C09 179.8 180.0
C06 C07 C08 C20 359.9 359.9
C08 C07 C06 H07 180.0 180.1
C08 C07 C06 H06 180.1 180.0
C06 C07 C08 H07 180.0 179.9
C09 C08 C07 C20 179.9 180.1
C07 C08 C09 N10 338.1 90.0
C07 C08 C09 H091 98.1 210.0
C07 C08 C09 H092 218.1 329.9
C07 C08 C20 C21 0.1 0.1
C07 C08 C20 H20 180.2 180.0
C07 C08 C09 C20 180.1 179.9
C09 C08 C07 H07 359.9 0.1
C09 C08 C20 C21 180.2 180.0
C09 C08 C20 H20 0.2 359.9
C08 C09 N10 C11 158.9 180.0
N10 C09 C08 H091 240.0 240.0
N10 C09 C08 H092 120.0 120.1
C08 C09 N10 H10 279.0 303.9
H091 C09 C08 H092 240.0 240.1
C05 C21 C20 C08 359.8 360.0
C07 C08 C20 C09 179.9 180.1
C20 C08 C07 H07 179.9 180.0
C20 C08 C09 N10 158.1 270.1
C20 C08 C09 H091 278.0 30.1
C20 C08 C09 H092 38.1 150.0
C08 C20 C21 N22 179.9 180.2
C21 C20 C08 H20 180.0 180.1
N10 C09 C08 C20 158.1 270.1
C08 C09 N10 H091 120.0 120.0
C08 C09 N10 H092 240.0 239.9
C09 N10 C11 C12 69.5 180.0
C11 N10 C09 H10 239.9 236.0
C09 N10 C11 H111 189.6 300.1
C09 N10 C11 H112 309.3 59.9
H091 C09 N10 H092 120.1 119.9
C11 N10 C09 H091 38.9 60.0
C11 N10 C09 H092 278.9 300.1
C09 N10 C11 H10 120.0 124.0
N10 C11 C12 C13 167.8 180.0
C12 C11 N10 H111 239.8 239.9
C12 C11 N10 H112 120.2 120.1
N10 C11 C12 H121 288.1 300.0
N10 C11 C12 H122 47.5 60.0
H111 C11 N10 H112 240.3 240.1
C12 C11 N10 H10 309.4 56.0
N10 C11 C12 H111 120.2 120.0
N10 C11 C12 H112 239.8 240.0
C11 C12 C13 C14 106.6 180.0
C13 C12 C11 H121 239.7 240.0
C13 C12 C11 H122 120.3 120.0
C11 C12 C13 H131 226.7 300.0
C11 C12 C13 H132 346.4 60.0
H111 C11 C12 H112 119.7 120.0
H121 C12 C11 H122 240.7 239.9
C13 C12 C11 H111 47.6 60.0
C13 C12 C11 H112 288.0 300.0
C11 C12 C13 H121 120.3 120.0
C11 C12 C13 H122 239.7 240.0
C12 C13 C14 C15 271.0 90.0
C12 C13 C14 C19 90.3 269.8
C14 C13 C12 H131 239.8 239.9
C14 C13 C12 H132 120.1 120.0
H121 C12 C13 H122 119.3 120.0
H131 C13 C12 H132 240.3 240.1
C14 C13 C12 H121 346.2 60.0
C14 C13 C12 H122 226.9 300.0
C12 C13 C14 H131 120.2 120.0
C12 C13 C14 H132 239.8 240.0
C15 C14 C13 C19 180.8 180.2
C13 C14 C15 C16 179.6 180.0
C13 C14 C15 H15 359.6 0.0
C13 C14 C19 N18 180.4 179.7
C13 C14 C19 H19 0.4 360.0
H131 C13 C14 H132 119.7 120.0
C13 C14 C15 C19 179.2 179.8
C15 C14 C13 H131 150.9 330.0
C15 C14 C13 H132 31.2 210.0
C15 C14 C19 N18 359.6 359.5
C15 C14 C19 H19 179.6 179.7
C14 C15 C16 C17 359.7 360.0
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 H16 179.7 180.0
C13 C14 C19 C15 180.8 180.2
C19 C14 C13 H131 330.1 149.7
C19 C14 C13 H132 210.4 29.8
C19 C14 C15 C16 0.4 0.3
C19 C14 C15 H15 180.4 180.2
C17 N18 C19 C14 0.2 0.6
N18 C19 C14 H19 180.0 179.7
C16 C15 C14 C19 0.4 0.3
C14 C15 C16 H15 180.0 180.0
C15 C16 C17 N18 0.1 0.0
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 H17 180.1 180.0
C17 C16 C15 H15 179.7 180.0
C15 C16 C17 H16 180.0 180.0
C16 C17 N18 C19 360.0 359.7
N18 C17 C16 H17 180.0 180.0
C14 C19 N18 C17 0.2 0.6
N18 C17 C16 H16 180.1 180.0
C16 C17 N18 H17 180.0 180.0
C17 N18 C19 H19 180.2 180.3
C14 C19 N18 H19 180.0 180.3
C19 N18 C17 H17 179.9 179.7
C02 N22 C21 C20 179.9 180.3
C05 C21 C20 N22 179.9 179.7
C08 C20 C21 H20 180.0 179.9
C05 C21 N22 C20 180.1 180.3
N22 C21 C20 H20 359.9 0.3
H011 N01 C02 C03 180.3 0.0
H011 N01 C02 N22 360.0 179.7
C02 N01 H011 H012 120.0 179.7
H012 N01 C02 C03 300.3 179.7
H012 N01 C02 N22 120.0 359.4
C02 N01 H012 H011 240.0 180.3
H03 C03 C02 N22 180.4 180.2
C02 C03 H03 C04 180.0 180.1
H03 C03 C04 C05 179.6 180.0
H03 C03 C04 H04 359.6 0.1
C03 C04 H04 C05 180.0 179.9
H04 C04 C03 H03 359.6 0.1
H04 C04 C05 C06 0.1 360.0
H04 C04 C05 C21 180.2 180.0
H06 C06 C05 C21 179.9 180.0
C05 C06 H06 C07 180.0 180.0
H06 C06 C07 C08 180.1 180.0
H06 C06 C07 H07 0.1 359.9
C06 C07 H07 C08 180.0 180.1
H07 C07 C06 H06 0.1 359.9
H07 C07 C08 C09 359.9 0.1
H07 C07 C08 C20 179.9 180.0
H091 C09 C08 C20 278.0 30.1
C08 C09 H091 N10 240.1 240.0
C08 C09 H091 H092 120.0 120.0
H091 C09 N10 C11 38.9 60.0
N10 C09 H091 H092 239.9 240.0
H091 C09 N10 H10 159.0 183.9
H092 C09 C08 C20 38.1 150.0
C08 C09 H092 N10 119.9 120.1
C08 C09 H092 H091 240.0 240.0
H092 C09 N10 C11 278.9 300.1
N10 C09 H092 H091 120.0 120.0
H092 C09 N10 H10 39.0 64.0
C08 C20 H20 C21 180.0 180.1
H20 C20 C21 N22 359.9 0.3
C09 N10 H10 C11 239.6 236.0
H10 N10 C09 H091 159.0 183.9
H10 N10 C09 H092 39.0 64.0
H10 N10 C11 C12 309.4 56.0
H10 N10 C11 H111 69.6 176.1
H10 N10 C11 H112 189.3 296.0
N10 C11 H111 C12 239.1 240.0
H111 C11 N10 H10 69.6 176.1
N10 C11 H111 H112 119.5 119.9
H111 C11 C12 C13 47.6 60.0
C12 C11 H111 H112 240.5 240.0
H111 C11 C12 H121 168.0 179.9
H111 C11 C12 H122 287.3 300.0
N10 C11 H112 C12 120.9 120.0
H112 C11 N10 H10 189.3 296.0
N10 C11 H112 H111 240.5 240.1
H112 C11 C12 C13 288.0 300.0
C12 C11 H112 H111 119.5 120.0
H112 C11 C12 H121 48.3 60.0
H112 C11 C12 H122 167.6 180.0
C11 C12 H121 C13 238.0 240.0
H121 C12 C11 H111 168.0 179.9
H121 C12 C11 H112 48.3 60.0
C11 C12 H121 H122 119.0 120.1
H121 C12 C13 C14 346.2 60.0
C13 C12 H121 H122 241.0 240.0
H121 C12 C13 H131 106.4 180.1
H121 C12 C13 H132 226.1 300.0
C11 C12 H122 C13 121.9 120.0
H122 C12 C11 H111 287.3 300.0
H122 C12 C11 H112 167.6 180.0
C11 C12 H122 H121 241.0 239.9
H122 C12 C13 C14 226.9 300.0
C13 C12 H122 H121 119.0 120.0
H122 C12 C13 H131 347.0 60.0
H122 C12 C13 H132 106.7 180.0
C12 C13 H131 C14 239.0 240.0
H131 C13 C12 H121 106.4 180.1
H131 C13 C12 H122 347.0 60.0
C12 C13 H131 H132 119.5 119.9
H131 C13 C14 C15 150.9 330.0
H131 C13 C14 C19 330.1 149.7
C14 C13 H131 H132 240.5 240.0
C12 C13 H132 C14 121.0 120.0
H132 C13 C12 H121 226.1 300.0
H132 C13 C12 H122 106.7 180.0
C12 C13 H132 H131 240.5 240.1
H132 C13 C14 C15 31.2 210.0
H132 C13 C14 C19 210.4 29.8
C14 C13 H132 H131 119.5 120.0
H15 C15 C14 C19 180.4 180.2
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 C17 179.7 180.0
H15 C15 C16 H16 359.7 0.0
C14 C19 H19 N18 180.0 179.7
C15 C16 H16 C17 180.0 180.0
H16 C16 C15 H15 359.7 0.0
H16 C16 C17 N18 180.1 180.0
H16 C16 C17 H17 0.1 0.0
C16 C17 H17 N18 180.0 180.0
H17 C17 C16 H16 0.1 0.0
H17 C17 N18 C19 179.9 179.7