PDB Chemical Component XFM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XFM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
N1 |
1.355 |
1.324 |
| C2 |
N1 |
1.350 |
1.320 |
| C3 |
C2 |
1.397 |
1.380 |
| C2 |
C7 |
1.511 |
1.507 |
| C4 |
C3 |
1.400 |
1.390 |
| C3 |
H3 |
1.080 |
1.079 |
| C25 |
C4 |
1.512 |
1.506 |
| C4 |
C5 |
1.394 |
1.383 |
| C5 |
C6 |
1.391 |
1.391 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
N26 |
1.333 |
1.391 |
| C7 |
C8 |
1.513 |
1.530 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.089 |
| C9 |
C8 |
1.509 |
1.507 |
| C8 |
H8 |
1.099 |
1.090 |
| C8 |
H8A |
1.100 |
1.091 |
| C14 |
C9 |
1.405 |
1.382 |
| C9 |
N10 |
1.357 |
1.319 |
| C11 |
N10 |
1.353 |
1.318 |
| C12 |
C11 |
1.401 |
1.382 |
| C11 |
C15 |
1.507 |
1.507 |
| C13 |
C12 |
1.400 |
1.386 |
| C12 |
H12 |
1.080 |
1.081 |
| C13 |
C14 |
1.392 |
1.387 |
| C13 |
H13 |
1.080 |
1.079 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C16 |
1.519 |
1.531 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H15A |
1.100 |
1.089 |
| C16 |
C17 |
1.504 |
1.507 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C18 |
C17 |
1.390 |
1.389 |
| C17 |
C22 |
1.403 |
1.383 |
| C18 |
C19 |
1.393 |
1.380 |
| C18 |
H18 |
1.080 |
1.080 |
| C24 |
C19 |
1.510 |
1.507 |
| C19 |
N20 |
1.364 |
1.319 |
| N20 |
C21 |
1.374 |
1.324 |
| C22 |
C21 |
1.399 |
1.390 |
| C21 |
N23 |
1.367 |
1.390 |
| C22 |
H22 |
1.080 |
1.080 |
| N23 |
HN23 |
1.000 |
0.971 |
| N23 |
HN2A |
1.000 |
0.969 |
| C24 |
H24 |
1.100 |
1.089 |
| C24 |
H24A |
1.100 |
1.090 |
| C24 |
H24B |
1.100 |
1.090 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.090 |
| C25 |
H25B |
1.100 |
1.090 |
| N26 |
HN26 |
1.000 |
0.970 |
| N26 |
HN2B |
1.000 |
0.970 |
Bond Angles for XFM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C7 |
120.6 |
119.6 |
| C2 |
C7 |
C8 |
108.7 |
109.5 |
| C2 |
C7 |
H7 |
109.8 |
109.5 |
| C2 |
C7 |
H7A |
109.8 |
109.5 |
| C4 |
C3 |
H3 |
120.1 |
120.3 |
| C4 |
C5 |
C6 |
118.8 |
119.1 |
| C4 |
C5 |
H5 |
120.6 |
120.5 |
| C6 |
C5 |
H5 |
120.6 |
120.5 |
| C5 |
C6 |
N26 |
119.7 |
119.7 |
| C6 |
N26 |
HN26 |
109.5 |
120.0 |
| C6 |
N26 |
HN2B |
109.5 |
120.0 |
| C8 |
C7 |
H7 |
109.7 |
109.5 |
| C8 |
C7 |
H7A |
109.7 |
109.5 |
| C7 |
C8 |
H8 |
110.0 |
109.5 |
| C7 |
C8 |
H8A |
110.0 |
109.5 |
| H7 |
C7 |
H7A |
109.2 |
109.5 |
| C9 |
C8 |
H8 |
110.0 |
109.5 |
| C9 |
C8 |
H8A |
110.0 |
109.5 |
| H8 |
C8 |
H8A |
108.9 |
109.5 |
| C12 |
C11 |
C15 |
122.4 |
119.6 |
| C11 |
C15 |
C16 |
111.7 |
109.4 |
| C11 |
C15 |
H15 |
108.7 |
109.4 |
| C11 |
C15 |
H15A |
108.8 |
109.5 |
| C13 |
C12 |
H12 |
120.1 |
120.3 |
| C14 |
C13 |
H13 |
120.4 |
120.8 |
| C13 |
C14 |
H14 |
120.4 |
120.4 |
| C16 |
C15 |
H15 |
108.7 |
109.5 |
| C16 |
C15 |
H15A |
108.7 |
109.5 |
| C15 |
C16 |
C17 |
109.5 |
109.4 |
| C15 |
C16 |
H16 |
109.4 |
109.4 |
| C15 |
C16 |
H16A |
109.4 |
109.5 |
| H15 |
C15 |
H15A |
110.2 |
109.5 |
| C17 |
C16 |
H16 |
109.4 |
109.5 |
| C17 |
C16 |
H16A |
109.4 |
109.5 |
| C16 |
C17 |
C22 |
121.0 |
120.8 |
| H16 |
C16 |
H16A |
109.5 |
109.5 |
| C18 |
C17 |
C22 |
120.4 |
118.5 |
| C17 |
C22 |
C21 |
119.1 |
119.1 |
| C17 |
C22 |
H22 |
120.5 |
120.5 |
| C19 |
C18 |
H18 |
120.4 |
120.4 |
| C18 |
C19 |
N20 |
120.0 |
120.9 |
| C19 |
N20 |
C21 |
122.0 |
121.6 |
| N20 |
C21 |
N23 |
121.3 |
119.7 |
| C22 |
C21 |
N23 |
119.5 |
119.7 |
| C21 |
N23 |
HN23 |
109.5 |
120.0 |
| C21 |
N23 |
HN2A |
109.5 |
120.0 |
| HN23 |
N23 |
HN2A |
109.5 |
120.0 |
| H24 |
C24 |
H24A |
109.4 |
109.5 |
| H24 |
C24 |
H24B |
109.5 |
109.5 |
| H24A |
C24 |
H24B |
109.5 |
109.5 |
| H25 |
C25 |
H25A |
109.5 |
109.4 |
| H25 |
C25 |
H25B |
109.5 |
109.5 |
| H25A |
C25 |
H25B |
109.5 |
109.5 |
| HN26 |
N26 |
HN2B |
109.5 |
120.0 |
Torsion Angles for XFM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C7 |
C8 |
259.0 |
125.0 |
| C3 |
C2 |
C7 |
H7 |
19.0 |
245.0 |
| C3 |
C2 |
C7 |
H7A |
139.1 |
5.0 |
| C8 |
C7 |
C2 |
H7 |
240.0 |
240.0 |
| C8 |
C7 |
C2 |
H7A |
120.0 |
120.0 |
| C2 |
C7 |
C8 |
H8 |
209.7 |
300.0 |
| C2 |
C7 |
C8 |
H8A |
329.7 |
60.0 |
| H7 |
C7 |
C2 |
H7A |
240.0 |
240.0 |
| C4 |
C3 |
C2 |
C7 |
180.5 |
180.1 |
| H3 |
C3 |
C2 |
C7 |
0.5 |
0.0 |
| C25 |
C4 |
C3 |
H3 |
0.4 |
360.0 |
| C25 |
C4 |
C5 |
H5 |
359.4 |
0.0 |
| C5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
N26 |
179.7 |
180.1 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C5 |
C6 |
N26 |
HN26 |
180.5 |
359.9 |
| C5 |
C6 |
N26 |
HN2B |
300.5 |
180.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
N26 |
359.7 |
0.1 |
| N26 |
C6 |
C5 |
H5 |
359.7 |
0.1 |
| HN26 |
N26 |
C6 |
HN2B |
240.0 |
180.0 |
| C2 |
C7 |
C8 |
H7 |
120.0 |
120.0 |
| C2 |
C7 |
C8 |
H7A |
240.0 |
240.0 |
| H7 |
C7 |
C8 |
H7A |
120.0 |
120.0 |
| C9 |
C8 |
C7 |
H8 |
240.0 |
240.0 |
| C9 |
C8 |
C7 |
H8A |
120.0 |
120.0 |
| H8 |
C8 |
C7 |
H8A |
240.0 |
240.0 |
| C2 |
C7 |
H7 |
C8 |
240.7 |
240.0 |
| C2 |
C7 |
H7 |
H7A |
120.3 |
120.0 |
| C8 |
C7 |
H7 |
H7A |
239.7 |
240.0 |
| H7 |
C7 |
C8 |
H8 |
89.7 |
180.0 |
| H7 |
C7 |
C8 |
H8A |
209.7 |
300.0 |
| C2 |
C7 |
H7A |
C8 |
119.3 |
120.0 |
| C2 |
C7 |
H7A |
H7 |
239.7 |
240.0 |
| C8 |
C7 |
H7A |
H7 |
120.3 |
120.0 |
| H7A |
C7 |
C8 |
H8 |
329.7 |
60.0 |
| H7A |
C7 |
C8 |
H8A |
89.7 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
329.7 |
60.0 |
| C9 |
C8 |
C7 |
H7A |
209.7 |
300.0 |
| C7 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
| C7 |
C8 |
C9 |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
C9 |
H8A |
120.0 |
120.0 |
| H8 |
C8 |
C7 |
H7 |
89.7 |
180.0 |
| H8 |
C8 |
C7 |
H7A |
329.7 |
60.0 |
| C7 |
C8 |
H8 |
H8A |
120.6 |
120.0 |
| C9 |
C8 |
H8 |
H8A |
239.4 |
240.0 |
| H8A |
C8 |
C7 |
H7 |
209.7 |
300.0 |
| H8A |
C8 |
C7 |
H7A |
89.7 |
180.0 |
| C7 |
C8 |
H8A |
H8 |
239.4 |
240.0 |
| C9 |
C8 |
H8A |
H8 |
120.6 |
120.0 |
| C14 |
C9 |
C8 |
H8 |
151.0 |
4.7 |
| C14 |
C9 |
C8 |
H8A |
31.0 |
244.7 |
| N10 |
C9 |
C8 |
H8 |
331.3 |
185.0 |
| N10 |
C9 |
C8 |
H8A |
211.3 |
65.0 |
| C12 |
C11 |
C15 |
C16 |
337.7 |
125.0 |
| C12 |
C11 |
C15 |
H15 |
97.7 |
244.9 |
| C12 |
C11 |
C15 |
H15A |
217.7 |
5.0 |
| C16 |
C15 |
C11 |
H15 |
240.0 |
240.0 |
| C16 |
C15 |
C11 |
H15A |
120.0 |
120.0 |
| C11 |
C15 |
C16 |
C17 |
218.5 |
180.0 |
| C11 |
C15 |
C16 |
H16 |
338.5 |
300.0 |
| C11 |
C15 |
C16 |
H16A |
98.5 |
60.0 |
| H15 |
C15 |
C11 |
H15A |
240.0 |
240.0 |
| C13 |
C12 |
C11 |
C15 |
180.4 |
180.0 |
| H12 |
C12 |
C11 |
C15 |
0.4 |
360.0 |
| C14 |
C13 |
C12 |
H12 |
180.0 |
179.8 |
| H13 |
C13 |
C12 |
H12 |
0.1 |
360.0 |
| H13 |
C13 |
C14 |
H14 |
0.2 |
359.8 |
| H14 |
C14 |
C13 |
H13 |
0.2 |
359.8 |
| C11 |
C15 |
C16 |
H15 |
120.0 |
119.9 |
| C11 |
C15 |
C16 |
H15A |
240.0 |
240.0 |
| H15 |
C15 |
C16 |
H15A |
120.0 |
120.1 |
| C17 |
C16 |
C15 |
H16 |
240.0 |
240.0 |
| C17 |
C16 |
C15 |
H16A |
120.0 |
120.0 |
| C15 |
C16 |
C17 |
C22 |
52.5 |
90.0 |
| H16 |
C16 |
C15 |
H16A |
240.0 |
240.0 |
| C11 |
C15 |
H15 |
C16 |
238.1 |
240.1 |
| C11 |
C15 |
H15 |
H15A |
119.1 |
120.0 |
| C16 |
C15 |
H15 |
H15A |
241.0 |
239.9 |
| H15 |
C15 |
C16 |
C17 |
98.5 |
60.1 |
| H15 |
C15 |
C16 |
H16 |
218.5 |
180.1 |
| H15 |
C15 |
C16 |
H16A |
338.5 |
300.0 |
| C11 |
C15 |
H15A |
C16 |
121.9 |
120.0 |
| C11 |
C15 |
H15A |
H15 |
240.9 |
240.0 |
| C16 |
C15 |
H15A |
H15 |
119.0 |
120.1 |
| H15A |
C15 |
C16 |
C17 |
338.6 |
300.0 |
| H15A |
C15 |
C16 |
H16 |
98.6 |
60.0 |
| H15A |
C15 |
C16 |
H16A |
218.6 |
180.0 |
| C17 |
C16 |
C15 |
H15 |
98.5 |
60.1 |
| C17 |
C16 |
C15 |
H15A |
338.6 |
300.0 |
| C15 |
C16 |
C17 |
H16 |
120.0 |
119.9 |
| C15 |
C16 |
C17 |
H16A |
240.0 |
240.0 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C18 |
C17 |
C16 |
C22 |
179.3 |
180.3 |
| C16 |
C17 |
C22 |
C21 |
179.7 |
179.8 |
| C16 |
C17 |
C22 |
H22 |
359.7 |
360.0 |
| H16 |
C16 |
C15 |
H15 |
218.5 |
180.1 |
| H16 |
C16 |
C15 |
H15A |
98.6 |
60.0 |
| C15 |
C16 |
H16 |
C17 |
240.0 |
240.1 |
| C15 |
C16 |
H16 |
H16A |
120.0 |
120.0 |
| C17 |
C16 |
H16 |
H16A |
240.0 |
239.9 |
| H16 |
C16 |
C17 |
C22 |
292.5 |
330.1 |
| H16A |
C16 |
C15 |
H15 |
338.5 |
300.0 |
| H16A |
C16 |
C15 |
H15A |
218.6 |
180.0 |
| C15 |
C16 |
H16A |
C17 |
120.1 |
120.0 |
| C15 |
C16 |
H16A |
H16 |
240.0 |
240.0 |
| C17 |
C16 |
H16A |
H16 |
120.0 |
120.0 |
| H16A |
C16 |
C17 |
C22 |
172.5 |
210.0 |
| C18 |
C17 |
C16 |
H16 |
111.8 |
150.3 |
| C18 |
C17 |
C16 |
H16A |
351.8 |
30.3 |
| C16 |
C17 |
C18 |
C22 |
180.7 |
179.8 |
| C18 |
C17 |
C22 |
C21 |
0.5 |
359.5 |
| C18 |
C17 |
C22 |
H22 |
180.5 |
179.7 |
| C22 |
C17 |
C16 |
H16 |
292.5 |
330.1 |
| C22 |
C17 |
C16 |
H16A |
172.5 |
210.0 |
| C17 |
C22 |
C21 |
N23 |
179.1 |
180.3 |
| C19 |
C18 |
C17 |
C22 |
0.1 |
0.3 |
| C18 |
C19 |
N20 |
C21 |
0.4 |
0.0 |
| H18 |
C18 |
C17 |
C22 |
180.1 |
180.2 |
| H18 |
C18 |
C19 |
N20 |
179.5 |
180.0 |
| C24 |
C19 |
C18 |
H18 |
359.7 |
0.1 |
| N20 |
C19 |
C18 |
H18 |
179.5 |
180.0 |
| C19 |
N20 |
C21 |
N23 |
180.6 |
179.9 |
| C17 |
C22 |
C21 |
N20 |
359.3 |
0.5 |
| C22 |
C21 |
N20 |
N23 |
179.7 |
179.8 |
| N20 |
C21 |
N23 |
HN23 |
0.0 |
360.0 |
| N20 |
C21 |
N23 |
HN2A |
120.0 |
180.0 |
| C17 |
C22 |
C21 |
H22 |
180.0 |
180.2 |
| N20 |
C21 |
C22 |
N23 |
180.3 |
180.2 |
| C22 |
C21 |
N23 |
HN23 |
180.3 |
180.2 |
| C22 |
C21 |
N23 |
HN2A |
300.3 |
0.2 |
| HN23 |
N23 |
C21 |
HN2A |
240.0 |
180.0 |
| C17 |
C22 |
H22 |
C21 |
180.0 |
179.8 |
| H22 |
C22 |
C21 |
N23 |
359.0 |
0.1 |
| C21 |
N23 |
HN23 |
HN2A |
120.0 |
180.0 |
| C21 |
N23 |
HN2A |
HN23 |
240.0 |
180.0 |
| H24A |
C24 |
H24 |
H24B |
120.0 |
120.1 |
| H24 |
C24 |
H24A |
H24B |
240.1 |
239.9 |
| H24 |
C24 |
H24B |
H24A |
119.9 |
120.0 |
| H25A |
C25 |
H25 |
H25B |
120.0 |
120.0 |
| H25 |
C25 |
H25A |
H25B |
240.0 |
240.0 |
| H25 |
C25 |
H25B |
H25A |
120.0 |
120.0 |
| C6 |
N26 |
HN26 |
HN2B |
120.0 |
180.0 |
| C6 |
N26 |
HN2B |
HN26 |
240.0 |
180.0 |