PDB Chemical Component XFK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XFK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C06 |
1.340 |
1.319 |
| N01 |
C02 |
1.341 |
1.325 |
| N02 |
C02 |
1.349 |
1.390 |
| C02 |
C03 |
1.402 |
1.391 |
| N02 |
HN02 |
1.000 |
0.970 |
| N02 |
HN0A |
1.000 |
0.970 |
| C03 |
C04 |
1.392 |
1.384 |
| C03 |
H03 |
1.080 |
1.080 |
| C05 |
C04 |
1.397 |
1.388 |
| C04 |
C07 |
1.506 |
1.507 |
| C06 |
C05 |
1.402 |
1.381 |
| C05 |
H05 |
1.080 |
1.080 |
| C08 |
C06 |
1.517 |
1.506 |
| C07 |
H07 |
1.101 |
1.090 |
| C07 |
H07A |
1.100 |
1.090 |
| C07 |
H07B |
1.100 |
1.091 |
| C08 |
C09 |
1.515 |
1.530 |
| C08 |
H08 |
1.100 |
1.090 |
| C08 |
H08A |
1.100 |
1.091 |
| C13 |
C09 |
1.506 |
1.506 |
| C09 |
H09 |
1.100 |
1.090 |
| C09 |
H09A |
1.100 |
1.091 |
| C16 |
N11 |
1.334 |
1.319 |
| N11 |
C12 |
1.344 |
1.319 |
| C12 |
C13 |
1.395 |
1.381 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.393 |
1.387 |
| C15 |
C14 |
1.401 |
1.387 |
| C14 |
H14 |
1.080 |
1.080 |
| C17 |
C15 |
1.506 |
1.506 |
| C16 |
C15 |
1.398 |
1.382 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
C18 |
1.521 |
1.530 |
| C17 |
H17 |
1.100 |
1.089 |
| C17 |
H17A |
1.100 |
1.091 |
| C26 |
C18 |
1.504 |
1.507 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C22 |
C21 |
1.390 |
1.391 |
| C26 |
C21 |
1.398 |
1.383 |
| C21 |
H21 |
1.080 |
1.080 |
| N23 |
C22 |
1.365 |
1.324 |
| C22 |
N22 |
1.366 |
1.390 |
| N22 |
HN22 |
1.000 |
0.970 |
| N22 |
HN2A |
1.000 |
0.970 |
| C24 |
N23 |
1.375 |
1.319 |
| C27 |
C24 |
1.504 |
1.507 |
| C24 |
C25 |
1.384 |
1.380 |
| C25 |
C26 |
1.383 |
1.389 |
| C25 |
H25 |
1.080 |
1.080 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.089 |
| C27 |
H27B |
1.101 |
1.089 |
Bond Angles for XFK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
N01 |
C06 |
122.3 |
121.6 |
| N01 |
C06 |
C05 |
119.2 |
120.8 |
| N01 |
C02 |
C03 |
121.1 |
120.6 |
| N02 |
C02 |
C03 |
122.1 |
119.7 |
| C02 |
C03 |
C04 |
118.0 |
119.1 |
| C02 |
C03 |
H03 |
121.0 |
120.5 |
| HN02 |
N02 |
HN0A |
109.5 |
120.0 |
| C04 |
C03 |
H03 |
121.0 |
120.5 |
| C03 |
C04 |
C07 |
120.5 |
120.7 |
| C05 |
C04 |
C07 |
119.8 |
120.7 |
| C04 |
C07 |
H07 |
109.5 |
109.5 |
| C04 |
C07 |
H07A |
109.5 |
109.5 |
| C04 |
C07 |
H07B |
109.5 |
109.5 |
| C06 |
C05 |
H05 |
120.1 |
120.3 |
| H07 |
C07 |
H07A |
109.5 |
109.4 |
| H07 |
C07 |
H07B |
109.5 |
109.5 |
| H07A |
C07 |
H07B |
109.5 |
109.4 |
| C09 |
C08 |
H08 |
108.4 |
109.5 |
| C09 |
C08 |
H08A |
108.4 |
109.4 |
| C08 |
C09 |
H09 |
108.9 |
109.5 |
| C08 |
C09 |
H09A |
108.9 |
109.4 |
| H08 |
C08 |
H08A |
110.5 |
109.5 |
| C13 |
C09 |
H09 |
108.9 |
109.5 |
| C13 |
C09 |
H09A |
108.9 |
109.5 |
| H09 |
C09 |
H09A |
110.0 |
109.4 |
| N11 |
C12 |
C13 |
121.7 |
120.8 |
| N11 |
C12 |
H12 |
119.2 |
119.6 |
| C13 |
C12 |
H12 |
119.1 |
119.7 |
| C15 |
C14 |
H14 |
121.1 |
120.8 |
| C18 |
C17 |
H17 |
110.1 |
109.5 |
| C18 |
C17 |
H17A |
110.1 |
109.5 |
| C17 |
C18 |
H18 |
110.0 |
109.5 |
| C17 |
C18 |
H18A |
110.0 |
109.5 |
| H17 |
C17 |
H17A |
108.8 |
109.5 |
| C26 |
C18 |
H18 |
110.0 |
109.5 |
| C26 |
C18 |
H18A |
110.0 |
109.5 |
| H18 |
C18 |
H18A |
109.0 |
109.4 |
| C22 |
C21 |
H21 |
119.6 |
120.5 |
| C26 |
C21 |
H21 |
119.6 |
120.5 |
| C22 |
N22 |
HN22 |
109.5 |
120.0 |
| C22 |
N22 |
HN2A |
109.5 |
120.0 |
| HN22 |
N22 |
HN2A |
109.5 |
120.0 |
| C24 |
C25 |
C26 |
118.2 |
119.3 |
| C24 |
C25 |
H25 |
120.9 |
120.4 |
| C26 |
C25 |
H25 |
120.9 |
120.3 |
| H27 |
C27 |
H27A |
109.5 |
109.5 |
| H27 |
C27 |
H27B |
109.5 |
109.4 |
| H27A |
C27 |
H27B |
109.5 |
109.5 |
Torsion Angles for XFK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C06 |
N01 |
C02 |
C03 |
0.4 |
359.9 |
| N01 |
C06 |
C05 |
H05 |
180.1 |
180.0 |
| C02 |
N01 |
C06 |
C05 |
359.9 |
0.1 |
| N02 |
C02 |
N01 |
C03 |
179.2 |
180.1 |
| N01 |
C02 |
C03 |
C04 |
359.3 |
0.1 |
| N01 |
C02 |
C03 |
H03 |
179.3 |
180.0 |
| N02 |
C02 |
N01 |
C06 |
179.6 |
180.0 |
| N01 |
C02 |
N02 |
C03 |
180.8 |
179.9 |
| N02 |
C02 |
C03 |
C04 |
180.1 |
180.0 |
| N02 |
C02 |
C03 |
H03 |
0.1 |
359.9 |
| C03 |
C02 |
N01 |
C06 |
0.4 |
359.9 |
| C04 |
C03 |
C02 |
H03 |
180.0 |
180.1 |
| C02 |
C03 |
C04 |
C07 |
180.9 |
180.0 |
| HN02 |
N02 |
C02 |
C03 |
179.2 |
180.0 |
| HN0A |
N02 |
C02 |
C03 |
299.2 |
0.1 |
| C02 |
C03 |
C04 |
H03 |
180.0 |
179.9 |
| C05 |
C04 |
C03 |
C07 |
179.8 |
180.0 |
| C03 |
C04 |
C07 |
H07 |
89.9 |
90.0 |
| C03 |
C04 |
C07 |
H07A |
209.9 |
210.0 |
| C03 |
C04 |
C07 |
H07B |
329.9 |
330.0 |
| C02 |
C03 |
H03 |
C04 |
180.0 |
180.1 |
| H03 |
C03 |
C04 |
C07 |
0.9 |
0.0 |
| N01 |
C06 |
C05 |
C04 |
0.1 |
360.0 |
| C05 |
C04 |
C03 |
H03 |
180.7 |
180.0 |
| C03 |
C04 |
C05 |
C07 |
180.2 |
180.0 |
| C05 |
C04 |
C07 |
H07 |
270.1 |
270.0 |
| C05 |
C04 |
C07 |
H07A |
30.1 |
30.0 |
| C05 |
C04 |
C07 |
H07B |
150.1 |
149.9 |
| C07 |
C04 |
C03 |
H03 |
0.9 |
0.0 |
| H07 |
C07 |
C04 |
H07A |
240.0 |
240.0 |
| H07 |
C07 |
C04 |
H07B |
120.0 |
120.0 |
| H07A |
C07 |
C04 |
H07B |
240.0 |
240.0 |
| C06 |
C05 |
C04 |
C07 |
179.4 |
180.0 |
| H05 |
C05 |
C04 |
C07 |
359.4 |
360.0 |
| C08 |
C06 |
C05 |
H05 |
0.1 |
0.0 |
| C04 |
C07 |
H07 |
H07A |
120.0 |
120.0 |
| C04 |
C07 |
H07 |
H07B |
240.0 |
240.0 |
| H07A |
C07 |
H07 |
H07B |
120.0 |
119.9 |
| C04 |
C07 |
H07A |
H07 |
240.0 |
239.9 |
| C04 |
C07 |
H07A |
H07B |
120.0 |
120.0 |
| H07 |
C07 |
H07A |
H07B |
240.0 |
240.0 |
| C04 |
C07 |
H07B |
H07 |
120.0 |
120.0 |
| C04 |
C07 |
H07B |
H07A |
240.0 |
240.0 |
| H07 |
C07 |
H07B |
H07A |
120.0 |
119.9 |
| H08 |
C08 |
C09 |
H08A |
120.0 |
120.0 |
| C13 |
C09 |
C08 |
H09 |
240.0 |
239.9 |
| C13 |
C09 |
C08 |
H09A |
120.0 |
120.0 |
| H09 |
C09 |
C08 |
H09A |
240.0 |
240.1 |
| C09 |
C08 |
H08 |
H08A |
241.3 |
240.1 |
| H08 |
C08 |
C09 |
H09 |
177.5 |
180.0 |
| H08 |
C08 |
C09 |
H09A |
297.5 |
300.0 |
| C09 |
C08 |
H08A |
H08 |
118.7 |
120.0 |
| H08A |
C08 |
C09 |
H09 |
57.5 |
60.1 |
| H08A |
C08 |
C09 |
H09A |
177.4 |
180.0 |
| C13 |
C09 |
C08 |
H08 |
57.5 |
60.0 |
| C13 |
C09 |
C08 |
H08A |
297.5 |
300.0 |
| C08 |
C09 |
C13 |
H09 |
120.0 |
120.1 |
| C08 |
C09 |
C13 |
H09A |
240.0 |
240.1 |
| H09 |
C09 |
C13 |
H09A |
120.0 |
120.0 |
| H09 |
C09 |
C08 |
H08 |
177.5 |
180.0 |
| H09 |
C09 |
C08 |
H08A |
57.5 |
60.1 |
| C08 |
C09 |
H09 |
H09A |
119.3 |
119.9 |
| C13 |
C09 |
H09 |
H09A |
240.7 |
240.0 |
| H09A |
C09 |
C08 |
H08 |
297.5 |
300.0 |
| H09A |
C09 |
C08 |
H08A |
177.4 |
180.0 |
| C08 |
C09 |
H09A |
H09 |
240.8 |
240.0 |
| C13 |
C09 |
H09A |
H09 |
119.3 |
120.1 |
| C16 |
N11 |
C12 |
H12 |
180.3 |
179.9 |
| C13 |
C12 |
N11 |
H12 |
180.0 |
180.0 |
| C12 |
C13 |
C09 |
H09 |
158.7 |
330.0 |
| C12 |
C13 |
C09 |
H09A |
38.7 |
210.0 |
| N11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| N11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| C14 |
C13 |
C09 |
H09 |
340.3 |
150.0 |
| C14 |
C13 |
C09 |
H09A |
220.3 |
30.0 |
| C14 |
C13 |
C12 |
H12 |
179.3 |
180.0 |
| C17 |
C15 |
C14 |
H14 |
359.2 |
360.0 |
| C16 |
C15 |
C14 |
H14 |
179.6 |
180.0 |
| H17 |
C17 |
C18 |
H17A |
119.9 |
120.0 |
| C26 |
C18 |
C17 |
H18 |
240.0 |
240.0 |
| C26 |
C18 |
C17 |
H18A |
120.0 |
120.0 |
| H18 |
C18 |
C17 |
H18A |
240.0 |
240.0 |
| C18 |
C17 |
H17 |
H17A |
239.2 |
240.0 |
| H17 |
C17 |
C18 |
H18 |
185.3 |
180.0 |
| H17 |
C17 |
C18 |
H18A |
305.3 |
300.0 |
| C18 |
C17 |
H17A |
H17 |
120.8 |
120.0 |
| H17A |
C17 |
C18 |
H18 |
65.3 |
60.0 |
| H17A |
C17 |
C18 |
H18A |
185.3 |
180.0 |
| C26 |
C18 |
C17 |
H17 |
65.2 |
60.0 |
| C26 |
C18 |
C17 |
H17A |
305.3 |
300.0 |
| C17 |
C18 |
C26 |
H18 |
120.0 |
120.0 |
| C17 |
C18 |
C26 |
H18A |
240.0 |
240.0 |
| H18 |
C18 |
C26 |
H18A |
120.0 |
119.9 |
| H18 |
C18 |
C17 |
H17 |
185.3 |
180.0 |
| H18 |
C18 |
C17 |
H17A |
65.3 |
60.0 |
| C17 |
C18 |
H18 |
H18A |
120.6 |
120.0 |
| C26 |
C18 |
H18 |
H18A |
239.4 |
240.0 |
| H18A |
C18 |
C17 |
H17 |
305.3 |
300.0 |
| H18A |
C18 |
C17 |
H17A |
185.3 |
180.0 |
| C17 |
C18 |
H18A |
H18 |
239.4 |
240.0 |
| C26 |
C18 |
H18A |
H18 |
120.6 |
120.0 |
| C26 |
C21 |
C22 |
H21 |
180.0 |
180.3 |
| C21 |
C26 |
C18 |
H18 |
297.5 |
149.4 |
| C21 |
C26 |
C18 |
H18A |
177.5 |
29.5 |
| C22 |
C21 |
C26 |
H21 |
180.0 |
179.7 |
| N23 |
C22 |
C21 |
H21 |
180.1 |
179.9 |
| N23 |
C22 |
N22 |
HN22 |
0.0 |
180.0 |
| N23 |
C22 |
N22 |
HN2A |
120.0 |
360.0 |
| N22 |
C22 |
C21 |
H21 |
0.5 |
359.9 |
| HN22 |
N22 |
C22 |
HN2A |
240.0 |
180.0 |
| C22 |
N22 |
HN22 |
HN2A |
120.0 |
180.0 |
| C22 |
N22 |
HN2A |
HN22 |
240.0 |
180.0 |
| C27 |
C24 |
C25 |
H25 |
359.6 |
359.9 |
| C26 |
C25 |
C24 |
H25 |
180.0 |
179.8 |
| C25 |
C26 |
C18 |
H18 |
117.6 |
330.0 |
| C25 |
C26 |
C18 |
H18A |
357.6 |
210.0 |
| C25 |
C26 |
C21 |
H21 |
179.7 |
179.8 |
| C24 |
C25 |
C26 |
H25 |
180.0 |
180.2 |
| C24 |
C25 |
H25 |
C26 |
180.0 |
179.8 |
| H27A |
C27 |
H27 |
H27B |
120.0 |
120.0 |
| H27 |
C27 |
H27A |
H27B |
240.0 |
240.0 |
| H27 |
C27 |
H27B |
H27A |
120.0 |
120.0 |