Atom Nomenclature for XEZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for XEZ

Atom Name (V3) Atom Name (V2)
CAC CAC
NAH NAH
NAM NAM
CAF CAF
CAN CAN
CAP CAP
CAG CAG
NAS NAS
NAI NAI
CAE CAE
CAR CAR
NAJ NAJ
CAD CAD
CAQ CAQ
CAO CAO
CAB CAB
CAA CAA
NAL NAL
NAK NAK
HAC HAC
HAM HAM
HAF HAF
HAG HAG
HAE HAE
HAD HAD
HAB HAB
HAK HAL
HAA HAA