PDB Chemical Component XD9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XD9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CAA	CAG	1.556	1.507
CAG	CAH	1.387	1.329
CAH	CAM	1.392	1.471
CAM	CAI	1.361	1.345
CAM	SAK	1.716	1.757
CAI	CAN	1.380	1.387
SAK	CAO	1.716	1.758
CAO	CAN	1.409	1.349
CAO	CAQ	1.516	1.516
CAN	CAR	1.572	1.523
CAR	CAL	1.549	1.506
CAR	OAF	1.449	1.429
CAR	CAJ	1.549	1.530
CAL	OAC	1.236	1.342
CAL	OAB	1.217	1.209
CAJ	CAP	1.561	1.531
CAP	OAD	1.437	1.428
CAP	CAQ	1.552	1.533
CAQ	OAE	1.445	1.428
CAA	HAA1	1.100	1.091
CAA	HAA2	1.100	1.090
CAA	HAA3	1.099	1.090
CAG	HAG	1.080	1.080
CAH	HAH	1.081	1.080
CAI	HAI	1.080	1.080
CAQ	HAQ	1.100	1.090
OAF	HAF	0.950	0.967
CAJ	HAJ1	1.100	1.090
CAJ	HAJ2	1.100	1.089
OAC	HAC	0.950	0.967
CAP	HAP	1.100	1.090
OAD	HAD	0.950	0.967
OAE	HAE	0.950	0.967

Bond Angles for XD9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CAA	CAG	CAH	120.0	120.0
CAG	CAA	HAA1	109.5	109.5
CAG	CAA	HAA2	109.4	109.5
CAG	CAA	HAA3	109.4	109.5
CAA	CAG	HAG	120.0	120.0
CAG	CAH	CAM	123.7	120.0
CAH	CAG	HAG	120.0	120.0
CAG	CAH	HAH	118.2	120.0
CAH	CAM	CAI	125.2	125.3
CAH	CAM	SAK	124.4	125.2
CAM	CAH	HAH	118.2	120.0
CAI	CAM	SAK	110.3	109.5
CAM	CAI	CAN	115.2	115.4
CAM	CAI	HAI	122.4	122.3
CAM	SAK	CAO	92.5	91.1
CAI	CAN	CAO	111.6	113.8
CAI	CAN	CAR	128.9	123.3
CAN	CAI	HAI	122.4	122.3
SAK	CAO	CAN	110.3	110.2
SAK	CAO	CAQ	124.6	125.1
CAN	CAO	CAQ	125.1	124.7
CAO	CAN	CAR	119.5	122.8
CAO	CAQ	CAP	112.8	108.7
CAO	CAQ	OAE	110.3	109.6
CAO	CAQ	HAQ	110.4	109.5
CAN	CAR	CAL	106.4	109.6
CAN	CAR	OAF	116.1	109.5
CAN	CAR	CAJ	108.6	108.7
CAL	CAR	OAF	107.4	109.6
CAL	CAR	CAJ	111.1	109.6
CAR	CAL	OAC	121.2	120.0
CAR	CAL	OAB	115.7	120.0
OAF	CAR	CAJ	107.3	109.7
CAR	OAF	HAF	109.5	114.0
CAR	CAJ	CAP	109.0	109.4
CAR	CAJ	HAJ1	109.6	109.5
CAR	CAJ	HAJ2	109.7	109.5
OAC	CAL	OAB	123.1	120.0
CAL	OAC	HAC	109.5	117.0
CAJ	CAP	OAD	109.9	109.6
CAJ	CAP	CAQ	111.0	108.8
CAP	CAJ	HAJ1	109.6	109.5
CAP	CAJ	HAJ2	109.7	109.5
CAJ	CAP	HAP	107.0	109.5
OAD	CAP	CAQ	105.6	109.5
OAD	CAP	HAP	112.2	109.6
CAP	OAD	HAD	109.5	114.1
CAP	CAQ	OAE	118.4	109.7
CAP	CAQ	HAQ	100.4	109.6
CAQ	CAP	HAP	111.1	109.8
OAE	CAQ	HAQ	103.5	109.7
CAQ	OAE	HAE	109.5	114.1
HAA1	CAA	HAA2	109.5	109.4
HAA1	CAA	HAA3	109.5	109.5
HAA2	CAA	HAA3	109.5	109.4
HAJ1	CAJ	HAJ2	109.1	109.5

Torsion Angles for XD9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CAA	CAG	CAH	CAM	179.3	180.0
CAH	CAG	CAA	HAG	180.0	180.1
CAA	CAG	CAH	HAH	359.3	360.0
HAA1	CAA	CAG	HAA2	240.0	240.0
HAA1	CAA	CAG	HAA3	120.0	120.0
HAA2	CAA	CAG	HAA3	240.0	240.0
CAH	CAG	CAA	HAA1	269.0	60.0
CAH	CAG	CAA	HAA2	29.0	180.0
CAH	CAG	CAA	HAA3	149.0	300.0
CAA	CAG	CAH	HAG	180.0	179.9
CAG	CAH	CAM	CAI	180.1	179.9
CAG	CAH	CAM	SAK	1.6	359.7
CAM	CAH	CAG	HAH	180.0	180.0
CAM	CAH	CAG	HAG	359.3	0.0
CAG	CAH	CAM	HAH	180.0	180.0
CAI	CAM	CAH	SAK	178.5	180.2
CAH	CAM	CAI	CAN	179.6	180.0
CAH	CAM	CAI	HAI	359.7	0.1
CAH	CAM	SAK	CAO	181.0	180.0
CAH	CAM	CAI	SAK	181.3	179.8
CAI	CAM	CAH	HAH	0.2	359.9
CAI	CAM	SAK	CAO	2.2	359.8
CAM	CAI	CAN	CAO	360.0	359.9
CAM	CAI	CAN	CAR	181.5	180.1
CAN	CAI	CAM	HAI	180.0	179.9
CAH	CAM	SAK	CAI	178.7	180.2
SAK	CAM	CAH	HAH	181.6	179.7
SAK	CAM	CAI	CAN	358.3	0.2
SAK	CAM	CAI	HAI	178.4	180.2
CAM	SAK	CAO	CAN	357.8	0.1
CAM	SAK	CAO	CAQ	176.1	180.0
CAN	CAI	CAM	SAK	358.3	0.2
CAM	CAI	CAN	HAI	180.0	180.1
SAK	CAO	CAN	CAI	1.7	360.0
CAI	CAN	CAO	CAQ	183.3	180.1
CAO	CAN	CAI	CAR	178.5	179.9
CAI	CAN	CAR	CAL	30.1	42.7
CAI	CAN	CAR	OAF	270.7	282.4
CAI	CAN	CAR	CAJ	149.8	162.5
CAI	CAN	CAO	SAK	1.7	360.0
CAN	CAO	SAK	CAQ	181.6	180.1
SAK	CAO	CAN	CAR	180.4	179.8
SAK	CAO	CAQ	CAP	175.9	163.7
SAK	CAO	CAQ	OAE	41.1	43.8
SAK	CAO	CAQ	HAQ	287.3	283.4
CAI	CAN	CAO	CAR	181.3	180.1
CAO	CAN	CAI	HAI	179.9	179.8
SAK	CAO	CAN	CAQ	178.4	179.9
CAN	CAO	CAQ	CAP	354.1	343.5
CAN	CAO	CAQ	OAE	219.2	223.7
CAN	CAO	CAQ	HAQ	105.4	103.3
CAO	CAN	CAR	CAL	211.7	222.9
CAO	CAN	CAR	OAF	92.3	102.6
CAO	CAN	CAR	CAJ	331.4	342.7
SAK	CAO	CAQ	CAN	181.8	180.1
CAQ	CAO	CAN	CAR	2.0	359.9
CAJ	CAP	CAQ	CAO	36.7	49.9
OAD	CAP	CAQ	CAO	155.8	169.7
CAP	CAQ	CAO	OAE	134.8	119.8
CAP	CAQ	CAO	HAQ	248.6	240.2
CAO	CAQ	CAP	HAP	277.8	290.0
OAE	CAQ	CAO	HAQ	113.8	120.4
CAO	CAQ	OAE	HAE	44.4	300.0
CAI	CAN	CAR	CAO	178.4	179.8
CAR	CAN	CAI	HAI	1.4	360.0
CAR	CAN	CAO	CAQ	2.0	359.9
CAL	CAR	CAN	OAF	119.4	120.3
CAL	CAR	CAN	CAJ	240.3	240.2
CAN	CAR	CAL	OAC	93.4	275.0
CAN	CAR	CAL	OAB	274.6	95.0
OAF	CAR	CAN	CAJ	120.9	119.9
CAN	CAR	OAF	HAF	174.7	60.1
CAN	CAR	CAJ	CAP	58.9	51.2
CAN	CAR	CAJ	HAJ1	178.9	171.2
CAN	CAR	CAJ	HAJ2	298.7	291.2
CAN	CAR	CAL	OAF	235.1	239.7
CAN	CAR	CAL	CAJ	118.0	119.3
OAF	CAR	CAL	CAJ	242.9	239.6
CAL	CAR	OAF	HAF	55.9	299.7
CAL	CAR	CAJ	CAP	175.5	171.1
CAL	CAR	CAJ	HAJ1	295.5	291.0
CAL	CAR	CAJ	HAJ2	55.4	51.0
OAC	CAL	CAR	OAB	178.7	180.0
CAR	CAL	OAC	HAC	181.4	180.0
CAN	CAR	OAF	CAL	118.8	120.3
CAN	CAR	OAF	CAJ	238.4	240.7
CAL	CAR	OAF	CAJ	119.6	120.4
OAF	CAR	CAL	OAC	218.3	35.3
OAF	CAR	CAL	OAB	39.6	215.3
OAF	CAR	CAJ	CAP	292.7	291.4
OAF	CAR	CAJ	HAJ1	52.7	51.4
OAF	CAR	CAJ	HAJ2	172.6	171.4
CAN	CAR	CAJ	CAL	243.4	240.2
CAN	CAR	CAJ	OAF	126.2	119.8
CAL	CAR	CAJ	OAF	242.8	239.6
CAJ	CAR	CAL	OAC	335.4	155.7
CAJ	CAR	CAL	OAB	156.7	335.7
CAJ	CAR	OAF	HAF	296.3	179.3
CAR	CAJ	CAP	OAD	178.3	169.5
CAR	CAJ	CAP	CAQ	294.8	289.2
CAP	CAJ	CAR	HAJ1	240.0	240.1
CAP	CAJ	CAR	HAJ2	120.1	120.0
CAR	CAJ	CAP	HAP	56.2	49.2
HAJ1	CAJ	CAR	HAJ2	240.1	240.0
OAC	CAL	CAR	OAF	218.3	35.3
OAC	CAL	CAR	CAJ	335.4	155.7
CAR	CAL	OAC	OAB	181.4	180.0
OAB	CAL	CAR	OAF	39.6	215.3
OAB	CAL	CAR	CAJ	156.7	335.7
CAR	CAL	OAB	OAC	178.7	180.0
OAB	CAL	OAC	HAC	0.0	360.0
CAO	CAQ	CAP	CAJ	36.7	49.9
CAR	CAJ	CAP	HAJ1	120.0	119.9
CAR	CAJ	CAP	HAJ2	239.8	240.0
OAD	CAP	CAJ	CAQ	243.5	240.3
OAD	CAP	CAJ	HAP	122.1	120.2
CAJ	CAP	OAD	HAD	212.8	180.0
CAJ	CAP	CAQ	OAE	167.6	169.7
CAJ	CAP	CAQ	HAQ	279.3	290.2
CAQ	CAP	CAJ	HAP	238.6	240.0
HAJ1	CAJ	CAP	HAJ2	119.8	120.0
CAO	CAQ	CAP	OAD	155.8	169.7
CAJ	CAP	OAD	CAQ	119.8	119.3
OAD	CAP	CAJ	HAJ1	58.3	49.5
OAD	CAP	CAJ	HAJ2	298.5	289.5
CAJ	CAP	OAD	HAP	241.1	239.8
OAD	CAP	CAQ	OAE	286.7	289.5
OAD	CAP	CAQ	HAQ	38.3	50.0
CAQ	CAP	OAD	HAP	121.3	120.5
CAO	CAQ	CAP	OAE	229.1	240.2
CAO	CAQ	CAP	HAQ	117.5	119.7
CAJ	CAP	CAQ	OAD	240.9	240.2
CAQ	CAP	CAJ	HAJ1	174.8	169.2
CAQ	CAP	CAJ	HAJ2	55.0	49.2
CAJ	CAP	CAQ	HAP	119.0	119.9
OAD	CAP	CAQ	HAP	238.0	239.7
CAQ	CAP	OAD	HAD	92.9	60.7
OAE	CAQ	CAP	HAQ	248.3	239.5
CAP	CAQ	OAE	HAE	272.4	180.8
CAO	CAQ	OAE	CAP	132.0	119.2
CAO	CAQ	OAE	HAQ	241.9	239.7
CAP	CAQ	OAE	HAQ	109.9	120.5
OAE	CAQ	CAP	HAP	48.6	49.8
HAA1	CAA	CAG	CAH	269.0	60.0
CAG	CAA	HAA1	HAA2	120.0	120.0
CAG	CAA	HAA1	HAA3	240.0	239.9
HAA1	CAA	CAG	HAG	89.0	240.0
HAA2	CAA	HAA1	HAA3	120.0	120.0
HAA2	CAA	CAG	CAH	29.0	180.0
CAG	CAA	HAA2	HAA1	240.0	240.0
CAG	CAA	HAA2	HAA3	120.0	120.0
HAA2	CAA	CAG	HAG	209.0	359.9
HAA1	CAA	HAA2	HAA3	240.0	240.0
HAA3	CAA	CAG	CAH	149.0	300.0
CAG	CAA	HAA3	HAA1	120.0	120.0
CAG	CAA	HAA3	HAA2	240.0	240.0
HAA3	CAA	CAG	HAG	329.0	119.9
HAA1	CAA	HAA3	HAA2	120.0	119.9
CAA	CAG	HAG	CAH	180.0	180.1
HAG	CAG	CAA	HAA1	89.0	240.0
HAG	CAG	CAA	HAA2	209.0	359.9
HAG	CAG	CAA	HAA3	329.0	119.9
HAG	CAG	CAH	CAM	359.3	0.0
HAG	CAG	CAH	HAH	179.2	180.1
CAG	CAH	HAH	CAM	180.0	180.0
HAH	CAH	CAG	HAG	179.2	180.1
HAH	CAH	CAM	CAI	0.2	359.9
HAH	CAH	CAM	SAK	181.6	179.7
HAI	CAI	CAM	SAK	178.4	180.2
CAM	CAI	HAI	CAN	180.0	179.9
HAI	CAI	CAN	CAO	179.9	179.8
HAI	CAI	CAN	CAR	1.4	360.0
CAO	CAQ	HAQ	CAP	240.7	240.8
CAO	CAQ	HAQ	OAE	118.0	120.3
CAP	CAQ	HAQ	OAE	237.3	239.5
HAQ	CAQ	CAP	HAP	160.3	170.3
HAQ	CAQ	OAE	HAE	162.5	60.3
HAF	OAF	CAR	CAJ	296.3	179.3
CAR	CAJ	HAJ1	CAP	240.4	240.1
CAR	CAJ	HAJ1	HAJ2	120.2	120.0
HAJ1	CAJ	CAP	OAD	58.3	49.5
HAJ1	CAJ	CAP	CAQ	174.8	169.2
CAP	CAJ	HAJ1	HAJ2	239.8	239.9
HAJ1	CAJ	CAP	HAP	296.2	289.3
CAR	CAJ	HAJ2	CAP	119.7	119.9
CAR	CAJ	HAJ2	HAJ1	239.8	240.0
HAJ2	CAJ	CAP	OAD	298.5	289.5
HAJ2	CAJ	CAP	CAQ	55.0	49.2
CAP	CAJ	HAJ2	HAJ1	120.1	120.0
HAJ2	CAJ	CAP	HAP	176.4	169.2
HAC	OAC	CAL	OAB	0.0	360.0
CAJ	CAP	HAP	OAD	120.6	120.3
CAJ	CAP	HAP	CAQ	238.6	240.6
HAP	CAP	CAJ	HAJ1	296.2	289.3
HAP	CAP	CAJ	HAJ2	176.4	169.2
OAD	CAP	HAP	CAQ	118.0	120.3
HAP	CAP	OAD	HAD	331.7	300.2
HAP	CAP	CAQ	OAE	48.6	49.8
HAP	CAP	CAQ	HAQ	160.3	170.3
HAD	OAD	CAP	CAQ	92.9	60.7
HAD	OAD	CAP	HAP	331.7	300.2
HAE	OAE	CAQ	HAQ	162.5	60.3