PDB Chemical Component XD3

Ideal Model

Chemical Description

Name 1,5-anhydro-2-deoxy-3-O-(2-deoxy-alpha-D-arabino-hexopyranosyl)-D-arabino-hex-1-enitol
Formula C12 H20 O8
Formal charge 0
Molecular weight 292.282 g/mol
Component type NON-POLYMER

Chemical features

Atom count 40
Chiral atom count 7
Chiral atoms C11 C C3 C1 C4 C9 C7
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1,5-anhydro-2-deoxy-3-O-(2-deoxy-alpha-D-arabino-hexopyranosyl)-D-arabino-hex-1-enitol
Systematic name (OpenEye OEToolkits) (2~{R},3~{S},4~{R},6~{S})-2-(hydroxymethyl)-6-[[(2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxy]oxane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1OC=C[C@@H](O[C@@H]2C[C@@H](O)[C@H](O)[C@@H](CO)O2)[C@@H]1O
SMILES (CACTVS) OC[CH]1OC=C[CH](O[CH]2C[CH](O)[CH](O)[CH](CO)O2)[CH]1O
Stereo SMILES (OpenEye) C1[C@H]([C@@H]([C@H](O[C@@H]1O[C@@H]2C=CO[C@@H]([C@H]2O)CO)CO)O)O
InChI descriptor InChI=1S/C12H20O8/c13-4-8-12(17)7(1-2-18-8)19-10-3-6(15)11(16)9(5-14)20-10/h1-2,6-17H,3-5H2/t6-,7-,8-,9-,10+,11+,12+/m1/s1
InChIKey descriptor AWXVCCNWHNGPQM-YOHLKZDQSA-N

Status Information

Last modified 2016-07-22
Created 2016-01-14
Release status REL
Model PDB code 5HJO
Processing site EBI