PDB Chemical Component XD3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XD3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O7	C11	1.428	1.429
C11	C10	1.521	1.531
C11	C	1.523	1.533
O	C	1.424	1.429
C10	C3	1.516	1.532
C	C1	1.531	1.531
O1	C2	1.428	1.429
C3	O2	1.427	1.429
C3	O3	1.402	1.429
C1	O2	1.438	1.429
C1	C2	1.513	1.530
O3	C4	1.440	1.429
O6	C9	1.428	1.428
C4	C9	1.602	1.533
C4	C5	1.494	1.504
C9	C7	1.530	1.535
C5	C6	1.308	1.307
C7	C8	1.508	1.530
C7	O4	1.444	1.430
C8	O5	1.408	1.430
C6	O4	1.360	1.351
O7	H1	0.950	0.968
C11	H2	1.100	1.090
C	H3	1.100	1.090
O	H4	0.950	0.966
C10	H5	1.100	1.090
C10	H6	1.100	1.090
C3	H7	1.100	1.090
C1	H8	1.100	1.090
C2	H9	1.100	1.091
C2	H10	1.100	1.090
O1	H11	0.949	0.967
C4	H12	1.099	1.089
C9	H13	1.100	1.090
O6	H14	0.950	0.967
C7	H15	1.100	1.090
C8	H16	1.099	1.090
C8	H17	1.100	1.090
O5	H18	0.949	0.967
C6	H19	1.080	1.080
C5	H20	1.080	1.080

Bond Angles for XD3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O7	C11	C10	110.8	109.6
O7	C11	C	111.8	109.5
C11	O7	H1	109.5	113.9
O7	C11	H2	108.6	109.5
C	C11	C10	110.6	109.1
C11	C10	C3	111.2	109.2
C10	C11	H2	107.4	109.6
C11	C10	H5	109.1	109.5
C11	C10	H6	109.0	109.5
C11	C	C1	109.0	109.1
C	C11	H2	107.4	109.6
C11	C	H3	108.6	109.5
O	C	C1	111.3	109.6
O	C	H3	109.9	109.6
C10	C3	O2	112.6	109.4
C10	C3	O3	108.5	109.5
C3	C10	H5	109.0	109.5
C3	C10	H6	109.0	109.5
C10	C3	H7	107.0	109.5
C	C1	O2	109.3	109.5
C	C1	C2	113.5	109.4
C1	C	H3	108.5	109.5
C	C1	H8	109.1	109.5
O1	C2	H9	108.9	109.4
O1	C2	H10	108.9	109.5
O2	C3	O3	112.1	109.5
O2	C3	H7	108.1	109.5
C3	O3	C4	117.3	114.0
O3	C3	H7	108.4	109.5
C2	C1	H8	109.3	109.5
C1	C2	H9	108.9	109.5
C1	C2	H10	108.9	109.5
O3	C4	C9	110.2	109.5
O3	C4	C5	107.7	109.5
O3	C4	H12	110.1	109.5
O6	C9	C7	110.0	109.7
O6	C9	H13	108.7	109.8
C9	C4	C5	111.5	109.4
C4	C9	C7	112.1	108.1
C9	C4	H12	108.0	109.5
C4	C9	H13	106.6	109.7
C4	C5	C6	119.7	122.5
C5	C4	H12	109.3	109.5
C4	C5	H20	120.2	118.8
C9	C7	C8	111.7	109.7
C9	C7	O4	110.9	108.2
C7	C9	H13	107.4	109.7
C9	C7	H15	111.3	109.7
C5	C6	H19	117.4	118.3
C8	C7	O4	98.0	109.7
C7	C8	O5	111.3	109.5
C8	C7	H15	111.7	109.7
C7	C8	H16	109.0	109.5
C7	C8	H17	109.0	109.5
O4	C7	H15	112.7	109.8
O5	C8	H16	109.0	109.5
O5	C8	H17	109.0	109.5
C8	O5	H18	109.5	114.0
H5	C10	H6	109.5	109.6
H9	C2	H10	109.5	109.5
H16	C8	H17	109.5	109.4

Torsion Angles for XD3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C	C11	O7	C10	236.1	240.4
O7	C11	C10	C3	184.1	183.2
C10	C11	O7	H2	242.2	239.8
O7	C11	C10	H5	304.4	303.0
O7	C11	C10	H6	63.8	63.3
O7	C11	C	C1	180.2	176.8
C	C11	O7	H2	118.4	120.2
O7	C11	C	H3	62.3	57.0
O7	C11	C10	C	235.5	240.2
C10	C11	O7	H1	180.0	300.0
O7	C11	C10	H2	118.5	120.2
C10	C11	C	C1	56.3	57.0
C	C11	C10	H2	243.0	240.0
C10	C11	C	H3	298.3	297.1
C11	C10	C3	O2	49.7	57.6
C11	C10	C3	O3	285.0	297.6
C3	C10	C11	H5	239.7	240.1
C3	C10	C11	H6	120.2	119.9
C11	C10	C3	H7	168.3	177.6
H5	C10	C11	H6	240.5	239.8
O7	C11	C	C10	124.0	119.9
C	C11	O7	H1	56.1	180.4
O7	C11	C	H2	240.9	239.8
C	C11	C10	C3	308.6	303.0
C10	C11	C	H2	117.0	119.9
C	C11	C10	H5	68.9	62.9
C	C11	C10	H6	188.4	183.1
O	C	C11	C1	122.0	120.0
O	C	C11	H3	239.9	239.8
C11	C	C1	O2	300.7	302.4
C11	C	C1	C2	183.6	182.4
C1	C	C11	H3	118.0	119.9
C11	C	C1	H8	61.5	62.4
O	C	C11	C10	178.3	176.9
C11	C	O	C1	239.4	240.3
O	C	C11	H2	61.3	57.0
C11	C	O	H3	119.2	120.1
O	C	C1	O2	179.8	182.5
O	C	C1	C2	62.7	62.5
C1	C	O	H3	239.8	239.8
O	C	C1	H8	300.6	302.5
C3	C10	C11	H2	65.6	63.0
C11	C10	C3	H5	120.3	119.9
C11	C10	C3	H6	239.8	240.1
O2	C3	C10	O3	124.7	120.0
O2	C3	C10	H7	241.4	240.0
C10	C3	O3	C4	188.1	190.0
O3	C3	C10	H7	116.7	120.0
H5	C10	C3	H6	119.5	120.2
C1	C	C11	C10	56.3	57.0
C1	C	C11	H2	299.3	297.0
C11	C	C1	H3	242.0	240.2
O	C	C1	H3	121.0	120.2
C2	C1	C	H8	122.1	120.0
C	C1	C2	H9	308.5	305.0
C	C1	C2	H10	189.1	65.0
O1	C2	C1	H8	190.8	305.0
C1	C2	O1	H9	239.7	120.0
C1	C2	O1	H10	120.3	240.0
H9	C2	O1	H10	240.7	120.0
C10	C3	O2	O3	237.3	240.0
O2	C3	C10	H5	289.4	297.7
O2	C3	C10	H6	170.0	177.5
C10	C3	O2	H7	117.9	120.0
C	C1	O2	C3	59.8	61.2
O2	C3	O3	C4	63.1	70.1
O3	C3	O2	H7	240.6	240.0
C10	C3	O3	O2	125.0	119.9
O3	C3	C10	H5	164.7	177.8
O3	C3	C10	H6	45.3	57.5
C10	C3	O3	H7	244.2	240.0
O2	C3	O3	H7	119.2	120.0
C3	O3	C4	C9	92.3	150.0
C3	O3	C4	C5	214.1	270.0
C3	O3	C4	H12	333.2	30.0
C	C1	O2	C2	237.8	240.0
O2	C1	C	H3	58.8	62.3
C	C1	O2	H8	120.0	120.0
C1	O2	C3	O3	67.4	58.8
C1	O2	C3	H7	186.8	178.9
C	C1	C2	O2	119.5	120.0
C2	C1	C	H3	301.6	302.3
C	C1	C2	H8	238.0	240.0
O1	C2	C1	H9	120.3	240.0
O1	C2	C1	H10	239.7	120.0
H9	C2	C1	H10	119.4	240.0
C4	O3	C3	H7	303.9	310.0
C9	C4	O3	C5	238.2	240.0
O3	C4	C9	C7	164.3	166.8
C9	C4	O3	H12	119.0	120.0
O3	C4	C9	H13	47.0	47.2
O3	C4	C5	C6	214.5	222.5
C5	C4	O3	H12	240.9	240.0
O3	C4	C5	H20	34.5	42.5
O6	C9	C4	C5	168.8	166.5
C4	C9	O6	C7	234.7	241.3
O6	C9	C4	H12	48.7	46.5
C4	C9	O6	H13	117.4	120.7
O6	C9	C7	C8	85.4	58.2
O6	C9	C7	O4	193.6	177.9
C7	C9	O6	H13	242.7	239.4
O6	C9	C7	H15	319.8	297.6
O3	C4	C9	C5	119.5	120.0
O3	C4	C9	H12	239.7	240.0
O6	C9	C4	C7	124.1	119.7
O6	C9	C4	H13	241.3	239.3
C9	C4	C5	C6	335.5	342.5
C5	C4	C9	H12	120.1	120.0
C9	C4	C5	H20	155.5	162.5
C4	C9	C7	C8	210.4	177.9
C4	C9	C7	O4	318.6	297.6
C7	C9	C4	H13	117.3	119.6
C4	C9	C7	H15	84.9	57.3
O3	C4	C5	C9	239.0	240.0
O3	C4	C5	H12	119.6	120.0
C5	C4	C9	C7	44.8	46.8
C9	C4	C5	H12	240.7	240.0
C5	C4	C9	H13	287.5	287.2
C4	C5	C6	H19	180.7	180.4
O6	C9	C7	H13	118.1	120.7
C7	C9	C4	C5	44.8	46.8
C7	C9	C4	H12	284.6	286.8
C4	C9	C7	H13	243.2	240.4
C8	C7	C9	O4	251.8	240.3
C9	C7	C8	O5	220.0	185.0
C8	C7	C9	H15	125.6	120.6
C9	C7	C8	H16	340.3	305.0
C9	C7	C8	H17	99.7	65.0
O4	C7	C9	H15	233.7	240.3
C6	C5	C4	H12	94.8	102.5
C4	C5	C6	H20	180.0	180.0
C9	C7	C8	O4	116.3	118.8
C8	C7	C9	H13	327.3	297.6
C9	C7	C8	H15	234.6	239.4
O4	C7	C8	H15	118.3	120.6
O5	C8	C7	H16	239.7	240.0
O5	C8	C7	H17	120.3	120.0
C7	C8	O5	H18	180.0	180.0
H16	C8	C7	H17	240.5	240.0
C9	C7	O4	C8	243.0	240.3
O4	C7	C9	H13	75.4	57.2
C9	C7	O4	H15	125.5	119.7
O4	C7	C8	O5	103.7	66.3
C8	C7	O4	H15	242.5	239.4
O4	C7	C8	H16	223.9	186.2
O4	C7	C8	H17	343.4	306.2
O5	C8	C7	O4	103.7	66.3
O5	C8	C7	H15	345.4	305.6
C7	C8	O5	H16	120.3	120.0
C7	C8	O5	H17	239.7	240.0
H16	C8	O5	H17	119.5	120.0
C4	C5	C6	O4	0.7	0.5
C6	O4	C7	H15	254.0	287.9
H1	O7	C11	C10	180.0	300.0
H1	O7	C11	C	56.1	180.4
H1	O7	C11	H2	297.7	60.2
O7	C11	H2	C10	240.1	239.8
O7	C11	H2	C	121.1	120.2
H2	C11	O7	H1	297.7	60.2
C	C11	H2	C10	119.0	119.6
H2	C11	C10	C3	65.6	63.0
H2	C11	C10	H5	185.9	182.8
H2	C11	C10	H6	305.3	303.1
H2	C11	C	C1	299.3	297.0
H2	C11	C	H3	181.4	177.1
H3	C	C11	C10	298.3	297.1
C11	C	H3	C1	118.3	119.6
H3	C	C11	H2	181.4	177.1
O	C	H3	C1	238.1	239.8
H3	C	C1	O2	58.8	62.3
H3	C	C1	C2	301.6	302.3
H3	C	C1	H8	179.5	182.3
H4	O	C	C1	300.6	179.7
H4	O	C	H3	60.7	299.9
C11	C10	H5	C3	238.4	240.3
H5	C10	C11	H2	185.9	182.8
C11	C10	H5	H6	119.2	120.2
H5	C10	C3	O2	289.4	297.7
H5	C10	C3	O3	164.7	177.8
C3	C10	H5	H6	240.8	239.9
H5	C10	C3	H7	48.0	57.7
C11	C10	H6	C3	121.6	119.7
H6	C10	C11	H2	305.3	303.1
C11	C10	H6	H5	240.8	239.8
H6	C10	C3	O2	170.0	177.5
H6	C10	C3	O3	45.3	57.5
C3	C10	H6	H5	119.2	120.1
H6	C10	C3	H7	288.5	297.5
C10	C3	H7	O2	238.5	240.0
C10	C3	H7	O3	116.8	120.0
H7	C3	C10	H5	48.0	57.7
H7	C3	C10	H6	288.5	297.5
O2	C3	H7	O3	238.3	240.0
H7	C3	O3	C4	303.9	310.0
C	C1	H8	O2	239.9	240.0
C	C1	H8	C2	124.6	120.0
H8	C1	C	H3	179.5	182.3
H8	C1	C2	H9	70.5	65.0
H8	C1	C2	H10	311.1	185.0
O1	C2	H9	H10	119.0	240.0
H9	C2	C1	H8	70.5	65.0
C1	C2	H9	H10	241.0	120.0
O1	C2	H10	H9	241.0	119.9
H10	C2	C1	H8	311.1	185.0
C1	C2	H10	H9	119.0	240.0
H11	O1	C2	H9	300.3	60.0
H11	O1	C2	H10	59.7	300.0
O3	C4	H12	C9	120.4	120.0
O3	C4	H12	C5	241.9	240.0
C9	C4	H12	C5	121.5	120.0
H12	C4	C9	C7	284.6	286.8
H12	C4	C9	H13	167.4	167.2
H12	C4	C5	C6	94.8	102.5
H12	C4	C5	H20	274.8	282.5
O6	C9	H13	C7	241.0	239.4
H13	C9	C4	C5	287.5	287.2
C4	C9	H13	C7	120.4	118.7
H13	C9	C4	H12	167.4	167.2
H13	C9	C7	C8	327.3	297.6
H13	C9	C7	O4	75.4	57.2
H13	C9	C7	H15	201.7	177.0
H14	O6	C9	C7	305.2	298.7
H14	O6	C9	H13	62.6	59.3
C9	C7	H15	C8	125.6	120.6
C9	C7	H15	O4	234.7	241.2
H15	C7	C9	H13	201.7	177.0
C8	C7	H15	O4	109.1	120.6
H15	C7	C8	O5	345.4	305.6
H15	C7	C8	H16	105.7	65.6
H15	C7	C8	H17	225.1	185.6
H16	C8	C7	O4	223.9	186.2
C7	C8	H16	O5	238.3	240.0
H16	C8	C7	H15	105.7	65.6
C7	C8	H16	H17	119.2	120.0
O5	C8	H16	H17	240.8	240.0
H16	C8	O5	H18	59.7	59.9
H17	C8	C7	O4	343.4	306.2
C7	C8	H17	O5	121.7	120.0
H17	C8	C7	H15	225.1	185.6
C7	C8	H17	H16	240.8	240.0
O5	C8	H17	H16	119.2	120.0
H17	C8	O5	H18	300.2	300.0
H18	O5	C8	H16	59.7	59.9
H18	O5	C8	H17	300.2	300.0
C4	C5	H20	C6	180.0	180.0
H20	C5	C4	H12	274.8	282.5
H20	C5	C6	H19	0.7	0.4