PDB Chemical Component XCZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XCZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C11 C10 1.369 1.387
C11 C2 1.365 1.385
C10 N9 1.334 1.323
C2 C1 1.447 1.507
C2 N3 1.315 1.324
C4 N9 1.330 1.319
C4 N3 1.341 1.318
C4 S5 1.793 1.762
N6 S5 1.618 1.655
O7 S5 1.483 1.420
O8 S5 1.476 1.421
C11 H11 1.080 1.080
C10 H10 1.080 1.080
C1 H11C 1.100 1.090
C1 H12C 1.100 1.090
C1 H13C 1.100 1.090
N6 H61 1.000 0.970
N6 H62 1.000 0.970

Bond Angles for XCZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C10 C11 C2 115.4 118.4
C11 C10 N9 124.3 119.1
C10 C11 H11 122.3 120.8
C11 C10 H10 117.9 120.5
C11 C2 C1 124.0 120.5
C11 C2 N3 124.8 119.1
C2 C11 H11 122.3 120.8
C10 N9 C4 112.9 120.8
N9 C10 H10 117.8 120.4
C1 C2 N3 111.2 120.4
C2 C1 H11C 109.5 109.5
C2 C1 H12C 109.5 109.5
C2 C1 H13C 109.4 109.4
C2 N3 C4 113.2 120.8
N9 C4 N3 129.4 121.7
N9 C4 S5 112.8 119.1
N3 C4 S5 117.8 119.1
C4 S5 N6 103.9 107.2
C4 S5 O7 106.7 106.4
C4 S5 O8 109.5 106.4
N6 S5 O7 108.4 106.4
N6 S5 O8 107.0 106.4
S5 N6 H61 109.5 120.1
S5 N6 H62 109.5 120.0
O7 S5 O8 120.2 123.2
H11C C1 H12C 109.5 109.5
H11C C1 H13C 109.5 109.5
H12C C1 H13C 109.5 109.5
H61 N6 H62 109.4 119.9

Torsion Angles for XCZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C10 C11 C2 C1 181.3 180.0
C10 C11 C2 N3 3.2 0.1
C2 C11 C10 H11 180.0 180.2
C11 C10 N9 C4 359.8 360.0
N9 C10 C11 H10 180.0 180.1
C2 C11 C10 N9 358.0 0.0
C10 C11 C2 H11 180.0 179.8
C2 C11 C10 H10 178.0 179.9
C1 C2 C11 N3 178.2 179.9
C11 C2 C1 H11C 181.6 90.0
C11 C2 C1 H12C 301.6 210.0
C11 C2 C1 H13C 61.6 330.0
C11 C2 N3 C4 358.1 359.9
N9 C10 C11 C2 358.0 0.0
N9 C10 C11 H11 178.0 179.8
C11 C10 N9 H10 180.0 179.9
C10 N9 C4 N3 1.6 360.0
C10 N9 C4 S5 181.2 180.0
C11 C2 C1 N3 181.6 180.1
C1 C2 C11 H11 1.3 0.2
C1 C2 N3 C4 179.7 179.9
H11C C1 C2 H12C 240.0 240.0
H11C C1 C2 H13C 120.0 120.0
H12C C1 C2 H13C 240.0 240.0
C11 C2 N3 C1 178.4 179.9
N3 C2 C11 H11 183.2 180.3
N3 C2 C1 H11C 0.0 270.0
N3 C2 C1 H12C 120.0 30.0
N3 C2 C1 H13C 240.0 150.0
N9 C4 N3 C2 359.3 0.1
C2 N3 C4 S5 179.8 180.0
C4 N9 C10 H10 179.8 180.1
C2 N3 C4 N9 359.3 0.1
N3 C4 N9 S5 180.4 179.9
N9 C4 S5 N6 299.1 90.0
N9 C4 S5 O7 53.5 203.5
N9 C4 S5 O8 185.1 336.4
N9 C4 N3 S5 179.6 180.1
N3 C4 S5 N6 118.7 270.0
N3 C4 S5 O7 233.1 23.6
N3 C4 S5 O8 4.8 156.5
N9 C4 S5 N3 180.4 179.9
N6 S5 C4 O7 245.6 246.4
N6 S5 C4 O8 114.0 113.6
C4 S5 N6 H61 180.0 0.0
C4 S5 N6 H62 300.0 180.0
O7 S5 C4 O8 228.4 227.1
C4 S5 N6 O7 113.2 113.5
C4 S5 N6 O8 244.3 246.5
O7 S5 N6 O8 131.0 133.0
H61 N6 S5 H62 240.0 180.0
C4 S5 O7 N6 248.7 245.9
C4 S5 O7 O8 125.3 122.9
N6 S5 O7 O8 236.7 237.0
O7 S5 N6 H61 66.8 246.5
O7 S5 N6 H62 186.8 66.5
C4 S5 O8 N6 112.0 114.1
C4 S5 O8 O7 236.0 237.1
N6 S5 O8 O7 124.0 123.0
O8 S5 N6 H61 295.8 113.5
O8 S5 N6 H62 55.8 293.5
C10 C11 H11 C2 180.0 180.2
H11 C11 C10 N9 178.0 179.8
H11 C11 C10 H10 358.0 359.7
H11 C11 C2 C1 1.3 0.2
H11 C11 C2 N3 183.2 180.3
H10 C10 C11 C2 178.0 179.9
C11 C10 H10 N9 180.0 180.1
H10 C10 C11 H11 358.0 359.7
H10 C10 N9 C4 179.8 180.1
H11C C1 C2 N3 0.0 270.0
C2 C1 H11C H12C 120.0 120.0
C2 C1 H11C H13C 240.0 240.0
H12C C1 H11C H13C 120.0 120.0
H12C C1 C2 N3 120.0 30.0
C2 C1 H12C H11C 240.0 240.0
C2 C1 H12C H13C 120.0 120.0
H11C C1 H12C H13C 240.0 240.0
H13C C1 C2 N3 240.0 150.0
C2 C1 H13C H11C 120.0 120.0
C2 C1 H13C H12C 240.0 240.0
H11C C1 H13C H12C 120.0 120.0
H61 N6 S5 O7 66.8 246.5
H61 N6 S5 O8 295.8 113.5
S5 N6 H61 H62 120.0 180.0
H62 N6 S5 O7 186.8 66.5
H62 N6 S5 O8 55.8 293.5
S5 N6 H62 H61 240.0 180.0