PDB Chemical Component X9I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X9I
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
N1 |
1.392 |
1.480 |
| C1 |
C6 |
1.427 |
1.385 |
| N1 |
O1 |
1.339 |
1.218 |
| C2 |
C1 |
1.431 |
1.379 |
| C2 |
H2 |
1.080 |
1.080 |
| N2 |
C7 |
1.354 |
1.347 |
| N2 |
H1N2 |
0.999 |
0.970 |
| N2 |
H2N2 |
1.000 |
0.970 |
| O2 |
N1 |
1.341 |
1.218 |
| C3 |
C2 |
1.429 |
1.397 |
| C3 |
C4 |
1.461 |
1.404 |
| N3 |
C4 |
1.337 |
1.388 |
| N3 |
C8 |
1.466 |
1.465 |
| N3 |
HN3 |
1.000 |
0.970 |
| O3 |
C7 |
1.336 |
1.216 |
| C4 |
C5 |
1.465 |
1.389 |
| C5 |
C6 |
1.419 |
1.380 |
| C5 |
H5 |
1.080 |
1.081 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C3 |
1.486 |
1.474 |
| C8 |
C9 |
1.500 |
1.507 |
| C8 |
H18 |
1.100 |
1.090 |
| C8 |
H28 |
1.100 |
1.090 |
| C9 |
C10 |
1.421 |
1.384 |
| C10 |
C11 |
1.416 |
1.380 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.081 |
| C12 |
C11 |
1.435 |
1.396 |
| C12 |
C15 |
1.472 |
1.477 |
| C13 |
C12 |
1.447 |
1.396 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C9 |
1.431 |
1.383 |
| C14 |
C13 |
1.422 |
1.380 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
O16 |
1.260 |
1.348 |
| O17 |
C15 |
1.248 |
1.215 |
| O16 |
H131 |
0.950 |
0.967 |
Bond Angles for X9I
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
C6 |
121.0 |
119.8 |
| C1 |
N1 |
O1 |
121.0 |
120.0 |
| C2 |
C1 |
C6 |
118.7 |
120.3 |
| C1 |
C6 |
C5 |
121.1 |
120.4 |
| C1 |
C6 |
H6 |
119.4 |
119.8 |
| C3 |
C2 |
H2 |
119.2 |
120.1 |
| C7 |
N2 |
H1N2 |
120.0 |
120.1 |
| C7 |
N2 |
H2N2 |
120.0 |
120.0 |
| N2 |
C7 |
O3 |
119.8 |
120.0 |
| N2 |
C7 |
C3 |
121.1 |
120.0 |
| H1N2 |
N2 |
H2N2 |
120.0 |
119.9 |
| C3 |
C4 |
N3 |
119.7 |
120.2 |
| C3 |
C4 |
C5 |
116.9 |
119.6 |
| C4 |
N3 |
C8 |
127.7 |
120.0 |
| C4 |
N3 |
HN3 |
103.8 |
120.0 |
| N3 |
C4 |
C5 |
123.4 |
120.2 |
| C8 |
N3 |
HN3 |
103.8 |
120.0 |
| N3 |
C8 |
C9 |
115.1 |
109.5 |
| N3 |
C8 |
H18 |
107.6 |
109.4 |
| N3 |
C8 |
H28 |
107.6 |
109.5 |
| C4 |
C5 |
C6 |
121.3 |
120.1 |
| C4 |
C5 |
H5 |
119.3 |
119.9 |
| C6 |
C5 |
H5 |
119.3 |
120.0 |
| C5 |
C6 |
H6 |
119.5 |
119.8 |
| C9 |
C8 |
H18 |
107.6 |
109.5 |
| C9 |
C8 |
H28 |
107.7 |
109.5 |
| C8 |
C9 |
C10 |
119.2 |
119.8 |
| H18 |
C8 |
H28 |
111.2 |
109.4 |
| C9 |
C10 |
C11 |
120.4 |
120.1 |
| C9 |
C10 |
H10 |
119.8 |
119.9 |
| C11 |
C10 |
H10 |
119.8 |
120.0 |
| C10 |
C11 |
H11 |
119.6 |
120.0 |
| C12 |
C11 |
H11 |
119.5 |
120.1 |
| C13 |
C12 |
C15 |
123.6 |
120.2 |
| C12 |
C15 |
O16 |
119.5 |
120.0 |
| C14 |
C13 |
H13 |
119.8 |
120.0 |
| C15 |
O16 |
H131 |
109.5 |
117.0 |
Torsion Angles for X9I
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N1 |
C6 |
180.2 |
180.3 |
| N1 |
C1 |
C6 |
C5 |
180.4 |
179.8 |
| N1 |
C1 |
C6 |
H6 |
0.4 |
0.0 |
| C6 |
C1 |
N1 |
O1 |
360.0 |
360.0 |
| C4 |
C5 |
C6 |
C1 |
360.0 |
0.5 |
| C1 |
C6 |
C5 |
H5 |
180.0 |
180.3 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.7 |
| O1 |
N1 |
C1 |
C6 |
360.0 |
360.0 |
| N1 |
C1 |
C2 |
C6 |
179.8 |
179.7 |
| C2 |
C1 |
C6 |
C5 |
0.2 |
359.5 |
| C2 |
C1 |
C6 |
H6 |
180.2 |
179.7 |
| H2 |
C2 |
C1 |
C6 |
179.9 |
180.3 |
| H1N2 |
N2 |
C7 |
H2N2 |
180.0 |
180.0 |
| C7 |
N2 |
H1N2 |
H2N2 |
180.0 |
180.0 |
| H1N2 |
N2 |
C7 |
O3 |
360.0 |
360.0 |
| H1N2 |
N2 |
C7 |
C3 |
177.7 |
180.0 |
| C7 |
N2 |
H2N2 |
H1N2 |
180.0 |
180.0 |
| H2N2 |
N2 |
C7 |
O3 |
180.0 |
180.0 |
| H2N2 |
N2 |
C7 |
C3 |
357.6 |
360.0 |
| O2 |
N1 |
C1 |
C6 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
359.8 |
0.3 |
| C4 |
C3 |
C2 |
H2 |
179.9 |
180.0 |
| N2 |
C7 |
C3 |
C4 |
213.2 |
174.1 |
| C3 |
C4 |
N3 |
C8 |
176.5 |
185.6 |
| C3 |
C4 |
N3 |
HN3 |
296.6 |
5.6 |
| N3 |
C4 |
C3 |
C5 |
180.2 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
359.8 |
359.8 |
| C3 |
C4 |
C5 |
H5 |
179.8 |
180.0 |
| C3 |
C4 |
N3 |
C5 |
179.8 |
180.0 |
| C8 |
N3 |
C4 |
HN3 |
240.0 |
180.0 |
| C4 |
N3 |
C8 |
C9 |
79.2 |
180.0 |
| C4 |
N3 |
C8 |
H18 |
199.2 |
300.0 |
| C4 |
N3 |
C8 |
H28 |
319.1 |
59.9 |
| N3 |
C4 |
C5 |
C6 |
179.6 |
179.7 |
| N3 |
C4 |
C5 |
H5 |
359.6 |
359.9 |
| C4 |
N3 |
C8 |
HN3 |
120.0 |
180.0 |
| C8 |
N3 |
C4 |
C5 |
356.8 |
5.6 |
| C9 |
C8 |
N3 |
H18 |
240.0 |
240.0 |
| C9 |
C8 |
N3 |
H28 |
120.0 |
120.1 |
| N3 |
C8 |
C9 |
C10 |
237.4 |
90.0 |
| H18 |
C8 |
N3 |
H28 |
240.0 |
240.1 |
| C4 |
N3 |
HN3 |
C8 |
224.8 |
180.0 |
| HN3 |
N3 |
C4 |
C5 |
116.8 |
185.6 |
| HN3 |
N3 |
C8 |
C9 |
319.1 |
0.0 |
| HN3 |
N3 |
C8 |
H18 |
79.1 |
120.0 |
| HN3 |
N3 |
C8 |
H28 |
199.1 |
239.9 |
| O3 |
C7 |
N2 |
H1N2 |
360.0 |
360.0 |
| O3 |
C7 |
N2 |
H2N2 |
180.0 |
180.0 |
| N2 |
C7 |
O3 |
C3 |
177.7 |
180.0 |
| C1 |
C6 |
C5 |
C4 |
360.0 |
0.5 |
| C3 |
C4 |
C5 |
N3 |
180.2 |
180.0 |
| C5 |
C4 |
N3 |
C8 |
356.8 |
5.6 |
| C5 |
C4 |
N3 |
HN3 |
116.8 |
185.6 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.2 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.2 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
360.0 |
0.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| H6 |
C6 |
C5 |
H5 |
360.0 |
0.0 |
| C7 |
C3 |
C2 |
H2 |
0.8 |
360.0 |
| C3 |
C7 |
N2 |
H1N2 |
177.7 |
180.0 |
| C3 |
C7 |
N2 |
H2N2 |
357.6 |
360.0 |
| N2 |
C7 |
C3 |
O3 |
182.3 |
180.0 |
| C9 |
C8 |
N3 |
HN3 |
319.1 |
0.0 |
| N3 |
C8 |
C9 |
H18 |
120.0 |
120.0 |
| N3 |
C8 |
C9 |
H28 |
240.0 |
240.0 |
| H18 |
C8 |
C9 |
H28 |
120.0 |
120.0 |
| C8 |
C9 |
C10 |
C11 |
180.5 |
180.0 |
| C8 |
C9 |
C10 |
H10 |
0.6 |
359.9 |
| H18 |
C8 |
N3 |
HN3 |
79.1 |
120.0 |
| N3 |
C8 |
H18 |
C9 |
235.4 |
240.0 |
| N3 |
C8 |
H18 |
H28 |
117.7 |
119.9 |
| C9 |
C8 |
H18 |
H28 |
242.3 |
239.9 |
| H18 |
C8 |
C9 |
C10 |
117.4 |
330.0 |
| H28 |
C8 |
N3 |
HN3 |
199.1 |
239.9 |
| N3 |
C8 |
H28 |
C9 |
124.6 |
120.1 |
| N3 |
C8 |
H28 |
H18 |
242.3 |
240.1 |
| C9 |
C8 |
H28 |
H18 |
117.7 |
120.0 |
| H28 |
C8 |
C9 |
C10 |
357.4 |
210.0 |
| C10 |
C9 |
C8 |
H18 |
117.4 |
330.0 |
| C10 |
C9 |
C8 |
H28 |
357.4 |
210.0 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.1 |
| C9 |
C10 |
C11 |
H11 |
180.1 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
179.9 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.1 |
| H10 |
C10 |
C11 |
H11 |
0.1 |
0.1 |
| H11 |
C11 |
C10 |
H10 |
0.1 |
0.1 |
| C12 |
C11 |
C10 |
H10 |
180.1 |
180.1 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C15 |
C12 |
C11 |
H11 |
359.7 |
0.0 |
| C12 |
C15 |
O16 |
H131 |
180.0 |
179.9 |
| C13 |
C12 |
C11 |
H11 |
179.8 |
180.0 |
| C13 |
C12 |
C15 |
O16 |
180.0 |
0.0 |
| H13 |
C13 |
C12 |
C15 |
0.2 |
0.0 |
| C14 |
C9 |
C8 |
H18 |
298.0 |
149.7 |
| C14 |
C9 |
C8 |
H28 |
177.9 |
29.7 |
| C14 |
C9 |
C10 |
H10 |
180.0 |
180.2 |
| C14 |
C13 |
C12 |
C15 |
180.2 |
179.7 |
| H14 |
C14 |
C13 |
H13 |
0.0 |
359.9 |
| O17 |
C15 |
O16 |
H131 |
360.0 |
359.9 |