PDB Chemical Component X96

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X96

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N1 1.391 1.480
C1 C2 1.426 1.377
C1 C6 1.421 1.386
N1 O1 1.339 1.218
N1 O2 1.335 1.218
C2 C3 1.433 1.398
C2 H2 1.080 1.080
N2 C7 1.350 1.348
N2 HN2 1.000 0.970
N2 HN2A 1.000 0.970
C3 C4 1.459 1.404
C3 C7 1.496 1.474
N3 C4 1.331 1.389
N3 C8 1.486 1.465
N3 HN3 1.000 0.970
O3 C7 1.331 1.215
C4 C5 1.458 1.389
N4 C15 1.464 1.469
N4 HN4 1.000 1.010
N4 HN4A 1.000 1.009
C5 C6 1.412 1.379
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C8 C9 1.509 1.508
C8 H8 1.100 1.089
C8 H8A 1.100 1.089
C9 C10 1.430 1.382
C9 C14 1.427 1.382
C10 C11 1.416 1.383
C10 H10 1.080 1.080
C11 C12 1.435 1.382
C11 H11 1.080 1.080
C12 C13 1.441 1.383
C12 C15 1.384 1.506
C13 C14 1.421 1.382
C13 H13 1.080 1.080
C14 H14 1.080 1.080
C15 H15 1.100 1.090
C15 H15A 1.100 1.090

Bond Angles for X96

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C2 120.7 119.8
N1 C1 C6 120.8 119.8
C1 N1 O1 121.0 120.0
C1 N1 O2 121.0 120.0
C2 C1 C6 118.5 120.4
C1 C2 C3 121.7 119.9
C1 C2 H2 119.1 120.0
C1 C6 C5 121.3 120.4
C1 C6 H6 119.3 119.8
O1 N1 O2 118.0 120.0
C3 C2 H2 119.2 120.0
C2 C3 C4 120.1 119.6
C2 C3 C7 116.4 120.2
C7 N2 HN2 120.0 120.0
C7 N2 HN2A 120.0 120.0
N2 C7 C3 121.3 120.0
N2 C7 O3 119.0 120.0
HN2 N2 HN2A 120.0 120.0
C4 C3 C7 123.5 120.2
C3 C4 N3 120.3 120.2
C3 C4 C5 116.8 119.6
C3 C7 O3 119.7 120.1
C4 N3 C8 127.8 120.0
C4 N3 HN3 103.8 119.9
N3 C4 C5 122.8 120.2
C8 N3 HN3 103.7 120.1
N3 C8 C9 114.3 109.4
N3 C8 H8 107.9 109.5
N3 C8 H8A 107.9 109.5
C4 C5 C6 121.6 120.1
C4 C5 H5 119.2 120.0
C15 N4 HN4 109.5 111.1
C15 N4 HN4A 109.5 111.0
N4 C15 C12 113.0 109.5
N4 C15 H15 108.3 109.4
N4 C15 H15A 108.3 109.4
HN4 N4 HN4A 109.4 110.9
C6 C5 H5 119.2 119.9
C5 C6 H6 119.3 119.8
C9 C8 H8 107.9 109.5
C9 C8 H8A 107.9 109.4
C8 C9 C10 119.4 120.0
C8 C9 C14 121.4 120.0
H8 C8 H8A 111.0 109.5
C10 C9 C14 119.2 120.0
C9 C10 C11 120.7 120.0
C9 C10 H10 119.7 120.0
C9 C14 C13 120.4 120.0
C9 C14 H14 119.8 120.0
C11 C10 H10 119.6 120.0
C10 C11 C12 120.7 120.0
C10 C11 H11 119.7 120.0
C12 C11 H11 119.6 120.0
C11 C12 C13 118.4 120.0
C11 C12 C15 118.4 120.0
C13 C12 C15 123.2 120.0
C12 C13 C14 120.7 120.0
C12 C13 H13 119.6 120.0
C12 C15 H15 108.3 109.5
C12 C15 H15A 108.3 109.5
C14 C13 H13 119.6 120.0
C13 C14 H14 119.8 120.0
H15 C15 H15A 110.6 109.5

Torsion Angles for X96

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 N1 C6 180.1 180.3
N1 C1 C2 C3 179.8 180.0
N1 C1 C2 H2 359.8 359.9
N1 C1 C6 C5 180.4 179.8
N1 C1 C6 H6 0.3 0.0
O1 N1 C1 O2 180.1 180.1
N1 C1 C2 C6 179.9 179.7
C2 C1 N1 O1 179.9 0.1
C2 C1 N1 O2 359.8 180.0
C2 C1 C6 C5 0.3 359.5
C2 C1 C6 H6 180.3 179.7
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 359.8 359.9
C1 C2 C3 C7 180.4 180.0
N1 C1 C6 C2 180.1 180.3
C6 C1 N1 O1 359.8 179.8
C6 C1 N1 O2 179.7 359.7
C6 C1 C2 C3 359.9 0.3
C6 C1 C2 H2 179.9 180.2
C4 C5 C6 C1 359.8 0.5
C1 C6 C5 H5 179.8 180.2
C5 C6 C1 H6 180.0 179.8
O1 N1 C1 C2 179.9 0.1
O1 N1 C1 C6 359.8 179.8
C1 N1 O1 O2 179.9 179.9
O2 N1 C1 C2 359.8 180.0
O2 N1 C1 C6 179.7 359.7
C1 N1 O2 O1 180.1 180.1
C3 C2 C1 C6 359.9 0.3
C1 C2 C3 H2 180.0 179.9
N2 C7 C3 C2 31.2 354.0
C4 C3 C2 C7 179.4 179.9
C2 C3 C4 N3 180.5 180.1
C2 C3 C4 C5 0.3 0.1
C2 C3 C7 O3 210.4 174.1
H2 C2 C1 C6 179.9 180.2
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 179.8 180.0
H2 C2 C3 C7 0.4 0.0
C2 C3 C7 N2 31.2 354.0
HN2 N2 C7 HN2A 180.0 180.1
C4 C3 C7 N2 211.8 174.1
C3 C7 N2 O3 179.2 180.1
C7 N2 HN2 HN2A 180.0 179.9
HN2 N2 C7 C3 179.2 0.1
HN2 N2 C7 O3 0.0 180.0
C7 N2 HN2A HN2 180.0 180.1
HN2A N2 C7 C3 359.2 180.0
HN2A N2 C7 O3 180.0 359.9
C4 C3 C2 H2 179.8 180.0
C2 C3 C4 C7 180.7 180.1
N2 C7 C3 C4 211.8 174.1
C4 C3 C7 O3 31.0 354.1
C3 C4 N3 C8 177.4 185.6
C3 C4 N3 HN3 297.3 5.5
N3 C4 C3 C5 180.2 180.0
C3 C4 C5 C6 359.9 359.7
C3 C4 C5 H5 179.9 180.0
C7 C3 C2 H2 0.4 0.0
C2 C3 C7 C4 179.4 179.9
C3 C7 N2 HN2 179.2 0.1
C3 C7 N2 HN2A 359.2 180.0
N2 C7 C3 O3 180.8 179.9
C7 C3 C4 N3 359.8 0.0
C7 C3 C4 C5 179.7 180.0
N3 C4 C3 C7 359.8 0.0
C3 C4 N3 C5 179.8 180.0
C8 N3 C4 HN3 240.0 180.1
C4 N3 C8 C9 81.5 180.0
C4 N3 C8 H8 201.5 299.9
C4 N3 C8 H8A 321.4 60.1
N3 C4 C5 C6 179.7 179.7
N3 C4 C5 H5 359.7 0.0
C4 N3 C8 HN3 120.0 179.9
C8 N3 C4 C5 357.5 5.6
C9 C8 N3 H8 240.0 240.0
C9 C8 N3 H8A 120.0 119.9
N3 C8 C9 C10 224.2 90.0
N3 C8 C9 C14 44.3 269.7
H8 C8 N3 H8A 240.0 239.9
C4 N3 HN3 C8 224.8 180.1
HN3 N3 C4 C5 117.5 185.5
HN3 N3 C8 C9 321.5 0.0
HN3 N3 C8 H8 81.5 120.0
HN3 N3 C8 H8A 201.5 240.1
O3 C7 N2 HN2 0.0 180.0
O3 C7 N2 HN2A 180.0 359.9
N2 C7 O3 C3 179.2 180.1
C1 C6 C5 C4 359.8 0.5
C5 C4 C3 C7 179.7 180.0
C3 C4 C5 N3 180.2 180.0
C5 C4 N3 C8 357.5 5.6
C5 C4 N3 HN3 117.5 185.5
C6 C5 C4 H5 180.0 179.7
C4 C5 C6 H6 179.8 180.3
HN4 N4 C15 HN4A 240.0 236.0
C11 C12 C15 N4 284.8 90.0
C13 C12 C15 N4 104.9 270.0
C12 C15 N4 H15 240.0 239.9
C12 C15 N4 H15A 120.0 120.0
H15 C15 N4 H15A 240.0 240.1
C15 N4 HN4 HN4A 120.0 124.0
HN4 N4 C15 C12 180.0 180.0
HN4 N4 C15 H15 300.0 300.0
HN4 N4 C15 H15A 60.0 60.0
C15 N4 HN4A HN4 240.0 236.0
HN4A N4 C15 C12 300.0 303.9
HN4A N4 C15 H15 60.0 64.0
HN4A N4 C15 H15A 180.0 183.9
C1 C6 C5 H6 180.0 180.2
C4 C5 C6 H5 180.0 180.3
C4 C5 H5 C6 180.0 179.7
H5 C5 C6 H6 359.8 360.0
C1 C6 H6 C5 180.0 179.8
H6 C6 C5 H5 359.8 360.0
C9 C8 N3 HN3 321.5 0.0
N3 C8 C9 H8 120.0 120.0
N3 C8 C9 H8A 240.0 240.0
H8 C8 C9 H8A 120.0 120.0
C10 C9 C8 C14 179.9 180.2
C8 C9 C10 C11 179.9 180.0
C8 C9 C10 H10 359.9 0.0
C8 C9 C14 C13 180.1 179.8
C8 C9 C14 H14 0.1 360.0
H8 C8 N3 HN3 81.5 120.0
N3 C8 H8 C9 236.1 240.0
N3 C8 H8 H8A 118.0 120.1
C9 C8 H8 H8A 242.0 240.0
H8 C8 C9 C10 104.2 330.0
H8 C8 C9 C14 284.3 149.7
H8A C8 N3 HN3 201.5 240.1
N3 C8 H8A C9 123.9 119.9
N3 C8 H8A H8 242.0 239.9
C9 C8 H8A H8 118.0 120.0
H8A C8 C9 C10 344.3 209.9
H8A C8 C9 C14 164.3 29.7
C10 C9 C8 H8 104.2 330.0
C10 C9 C8 H8A 344.3 209.9
C8 C9 C10 C14 180.1 179.8
C10 C9 C14 C13 0.1 359.6
C10 C9 C14 H14 180.1 179.8
C11 C10 C9 H10 180.0 180.0
C9 C10 C11 C12 0.0 0.0
C9 C10 C11 H11 180.0 180.0
C14 C9 C8 H8 284.3 149.7
C14 C9 C8 H8A 164.3 29.7
C8 C9 C14 C10 179.9 180.2
C14 C9 C10 C11 359.9 0.2
C14 C9 C10 H10 179.8 180.3
C12 C13 C14 C9 360.0 0.4
C9 C14 C13 H13 180.0 180.3
C13 C14 C9 H14 180.0 179.8
C11 C10 C9 C14 359.9 0.2
C9 C10 C11 H10 180.0 180.0
C12 C11 C10 H11 180.0 180.0
C10 C11 C12 C13 0.1 360.0
C10 C11 C12 C15 180.2 180.0
H10 C10 C9 C14 179.8 180.3
C9 C10 H10 C11 180.0 180.0
H10 C10 C11 C12 180.1 180.0
H10 C10 C11 H11 0.0 360.0
N4 C15 C12 C11 284.8 90.0
C12 C11 C10 H10 180.1 180.0
C10 C11 C12 H11 180.0 180.0
C13 C12 C11 C15 179.9 180.0
C11 C12 C13 C14 359.9 359.8
C11 C12 C13 H13 179.9 180.0
C11 C12 C15 H15 164.8 330.0
C11 C12 C15 H15A 44.8 210.0
H11 C11 C10 H10 0.0 360.0
C10 C11 H11 C12 180.0 180.0
H11 C11 C12 C13 180.1 180.0
H11 C11 C12 C15 0.2 360.0
N4 C15 C12 C13 104.9 270.0
C9 C14 C13 C12 360.0 0.4
C13 C12 C11 H11 180.1 180.0
C11 C12 C13 C15 180.1 180.0
C13 C12 C15 H15 344.9 150.0
C13 C12 C15 H15A 224.9 30.0
C14 C13 C12 H13 180.0 179.8
C12 C13 C14 H14 180.0 180.2
C12 C15 N4 HN4 180.0 180.0
C12 C15 N4 HN4A 300.0 303.9
N4 C15 C12 H15 120.0 120.0
N4 C15 C12 H15A 240.0 240.0
C15 C12 C11 H11 0.2 360.0
C11 C12 C15 C13 179.9 180.0
C15 C12 C13 C14 179.8 179.8
C15 C12 C13 H13 359.8 360.0
H15 C15 C12 H15A 120.0 120.0
C9 C14 C13 H14 180.0 180.2
C14 C13 C12 C15 179.8 179.8
C12 C13 C14 H13 180.0 180.2
H13 C13 C12 C15 359.8 360.0
C12 C13 H13 C14 180.0 179.8
H13 C13 C14 H14 360.0 0.1
C9 C14 H14 C13 180.0 179.8
H14 C14 C13 H13 360.0 0.1
H15 C15 N4 HN4 300.0 300.0
H15 C15 N4 HN4A 60.0 64.0
N4 C15 H15 C12 237.1 240.0
N4 C15 H15 H15A 118.6 119.9
C12 C15 H15 H15A 241.5 240.0
H15A C15 N4 HN4 60.0 60.0
H15A C15 N4 HN4A 180.0 183.9
N4 C15 H15A C12 122.9 120.0
N4 C15 H15A H15 241.4 240.1
C12 C15 H15A H15 118.5 120.1