PDB Chemical Component X96
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X96
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
N1 |
1.391 |
1.480 |
C1 |
C2 |
1.426 |
1.377 |
C1 |
C6 |
1.421 |
1.386 |
N1 |
O1 |
1.339 |
1.218 |
N1 |
O2 |
1.335 |
1.218 |
C2 |
C3 |
1.433 |
1.398 |
C2 |
H2 |
1.080 |
1.080 |
N2 |
C7 |
1.350 |
1.348 |
N2 |
HN2 |
1.000 |
0.970 |
N2 |
HN2A |
1.000 |
0.970 |
C3 |
C4 |
1.459 |
1.404 |
C3 |
C7 |
1.496 |
1.474 |
N3 |
C4 |
1.331 |
1.389 |
N3 |
C8 |
1.486 |
1.465 |
N3 |
HN3 |
1.000 |
0.970 |
O3 |
C7 |
1.331 |
1.215 |
C4 |
C5 |
1.458 |
1.389 |
N4 |
C15 |
1.464 |
1.469 |
N4 |
HN4 |
1.000 |
1.010 |
N4 |
HN4A |
1.000 |
1.009 |
C5 |
C6 |
1.412 |
1.379 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
C8 |
C9 |
1.509 |
1.508 |
C8 |
H8 |
1.100 |
1.089 |
C8 |
H8A |
1.100 |
1.089 |
C9 |
C10 |
1.430 |
1.382 |
C9 |
C14 |
1.427 |
1.382 |
C10 |
C11 |
1.416 |
1.383 |
C10 |
H10 |
1.080 |
1.080 |
C11 |
C12 |
1.435 |
1.382 |
C11 |
H11 |
1.080 |
1.080 |
C12 |
C13 |
1.441 |
1.383 |
C12 |
C15 |
1.384 |
1.506 |
C13 |
C14 |
1.421 |
1.382 |
C13 |
H13 |
1.080 |
1.080 |
C14 |
H14 |
1.080 |
1.080 |
C15 |
H15 |
1.100 |
1.090 |
C15 |
H15A |
1.100 |
1.090 |
Bond Angles for X96
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C1 |
C2 |
120.7 |
119.8 |
N1 |
C1 |
C6 |
120.8 |
119.8 |
C1 |
N1 |
O1 |
121.0 |
120.0 |
C1 |
N1 |
O2 |
121.0 |
120.0 |
C2 |
C1 |
C6 |
118.5 |
120.4 |
C1 |
C2 |
C3 |
121.7 |
119.9 |
C1 |
C2 |
H2 |
119.1 |
120.0 |
C1 |
C6 |
C5 |
121.3 |
120.4 |
C1 |
C6 |
H6 |
119.3 |
119.8 |
O1 |
N1 |
O2 |
118.0 |
120.0 |
C3 |
C2 |
H2 |
119.2 |
120.0 |
C2 |
C3 |
C4 |
120.1 |
119.6 |
C2 |
C3 |
C7 |
116.4 |
120.2 |
C7 |
N2 |
HN2 |
120.0 |
120.0 |
C7 |
N2 |
HN2A |
120.0 |
120.0 |
N2 |
C7 |
C3 |
121.3 |
120.0 |
N2 |
C7 |
O3 |
119.0 |
120.0 |
HN2 |
N2 |
HN2A |
120.0 |
120.0 |
C4 |
C3 |
C7 |
123.5 |
120.2 |
C3 |
C4 |
N3 |
120.3 |
120.2 |
C3 |
C4 |
C5 |
116.8 |
119.6 |
C3 |
C7 |
O3 |
119.7 |
120.1 |
C4 |
N3 |
C8 |
127.8 |
120.0 |
C4 |
N3 |
HN3 |
103.8 |
119.9 |
N3 |
C4 |
C5 |
122.8 |
120.2 |
C8 |
N3 |
HN3 |
103.7 |
120.1 |
N3 |
C8 |
C9 |
114.3 |
109.4 |
N3 |
C8 |
H8 |
107.9 |
109.5 |
N3 |
C8 |
H8A |
107.9 |
109.5 |
C4 |
C5 |
C6 |
121.6 |
120.1 |
C4 |
C5 |
H5 |
119.2 |
120.0 |
C15 |
N4 |
HN4 |
109.5 |
111.1 |
C15 |
N4 |
HN4A |
109.5 |
111.0 |
N4 |
C15 |
C12 |
113.0 |
109.5 |
N4 |
C15 |
H15 |
108.3 |
109.4 |
N4 |
C15 |
H15A |
108.3 |
109.4 |
HN4 |
N4 |
HN4A |
109.4 |
110.9 |
C6 |
C5 |
H5 |
119.2 |
119.9 |
C5 |
C6 |
H6 |
119.3 |
119.8 |
C9 |
C8 |
H8 |
107.9 |
109.5 |
C9 |
C8 |
H8A |
107.9 |
109.4 |
C8 |
C9 |
C10 |
119.4 |
120.0 |
C8 |
C9 |
C14 |
121.4 |
120.0 |
H8 |
C8 |
H8A |
111.0 |
109.5 |
C10 |
C9 |
C14 |
119.2 |
120.0 |
C9 |
C10 |
C11 |
120.7 |
120.0 |
C9 |
C10 |
H10 |
119.7 |
120.0 |
C9 |
C14 |
C13 |
120.4 |
120.0 |
C9 |
C14 |
H14 |
119.8 |
120.0 |
C11 |
C10 |
H10 |
119.6 |
120.0 |
C10 |
C11 |
C12 |
120.7 |
120.0 |
C10 |
C11 |
H11 |
119.7 |
120.0 |
C12 |
C11 |
H11 |
119.6 |
120.0 |
C11 |
C12 |
C13 |
118.4 |
120.0 |
C11 |
C12 |
C15 |
118.4 |
120.0 |
C13 |
C12 |
C15 |
123.2 |
120.0 |
C12 |
C13 |
C14 |
120.7 |
120.0 |
C12 |
C13 |
H13 |
119.6 |
120.0 |
C12 |
C15 |
H15 |
108.3 |
109.5 |
C12 |
C15 |
H15A |
108.3 |
109.5 |
C14 |
C13 |
H13 |
119.6 |
120.0 |
C13 |
C14 |
H14 |
119.8 |
120.0 |
H15 |
C15 |
H15A |
110.6 |
109.5 |
Torsion Angles for X96
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
N1 |
C6 |
180.1 |
180.3 |
N1 |
C1 |
C2 |
C3 |
179.8 |
180.0 |
N1 |
C1 |
C2 |
H2 |
359.8 |
359.9 |
N1 |
C1 |
C6 |
C5 |
180.4 |
179.8 |
N1 |
C1 |
C6 |
H6 |
0.3 |
0.0 |
O1 |
N1 |
C1 |
O2 |
180.1 |
180.1 |
N1 |
C1 |
C2 |
C6 |
179.9 |
179.7 |
C2 |
C1 |
N1 |
O1 |
179.9 |
0.1 |
C2 |
C1 |
N1 |
O2 |
359.8 |
180.0 |
C2 |
C1 |
C6 |
C5 |
0.3 |
359.5 |
C2 |
C1 |
C6 |
H6 |
180.3 |
179.7 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
C1 |
C2 |
C3 |
C4 |
359.8 |
359.9 |
C1 |
C2 |
C3 |
C7 |
180.4 |
180.0 |
N1 |
C1 |
C6 |
C2 |
180.1 |
180.3 |
C6 |
C1 |
N1 |
O1 |
359.8 |
179.8 |
C6 |
C1 |
N1 |
O2 |
179.7 |
359.7 |
C6 |
C1 |
C2 |
C3 |
359.9 |
0.3 |
C6 |
C1 |
C2 |
H2 |
179.9 |
180.2 |
C4 |
C5 |
C6 |
C1 |
359.8 |
0.5 |
C1 |
C6 |
C5 |
H5 |
179.8 |
180.2 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.8 |
O1 |
N1 |
C1 |
C2 |
179.9 |
0.1 |
O1 |
N1 |
C1 |
C6 |
359.8 |
179.8 |
C1 |
N1 |
O1 |
O2 |
179.9 |
179.9 |
O2 |
N1 |
C1 |
C2 |
359.8 |
180.0 |
O2 |
N1 |
C1 |
C6 |
179.7 |
359.7 |
C1 |
N1 |
O2 |
O1 |
180.1 |
180.1 |
C3 |
C2 |
C1 |
C6 |
359.9 |
0.3 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
N2 |
C7 |
C3 |
C2 |
31.2 |
354.0 |
C4 |
C3 |
C2 |
C7 |
179.4 |
179.9 |
C2 |
C3 |
C4 |
N3 |
180.5 |
180.1 |
C2 |
C3 |
C4 |
C5 |
0.3 |
0.1 |
C2 |
C3 |
C7 |
O3 |
210.4 |
174.1 |
H2 |
C2 |
C1 |
C6 |
179.9 |
180.2 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
H2 |
C2 |
C3 |
C4 |
179.8 |
180.0 |
H2 |
C2 |
C3 |
C7 |
0.4 |
0.0 |
C2 |
C3 |
C7 |
N2 |
31.2 |
354.0 |
HN2 |
N2 |
C7 |
HN2A |
180.0 |
180.1 |
C4 |
C3 |
C7 |
N2 |
211.8 |
174.1 |
C3 |
C7 |
N2 |
O3 |
179.2 |
180.1 |
C7 |
N2 |
HN2 |
HN2A |
180.0 |
179.9 |
HN2 |
N2 |
C7 |
C3 |
179.2 |
0.1 |
HN2 |
N2 |
C7 |
O3 |
0.0 |
180.0 |
C7 |
N2 |
HN2A |
HN2 |
180.0 |
180.1 |
HN2A |
N2 |
C7 |
C3 |
359.2 |
180.0 |
HN2A |
N2 |
C7 |
O3 |
180.0 |
359.9 |
C4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
C2 |
C3 |
C4 |
C7 |
180.7 |
180.1 |
N2 |
C7 |
C3 |
C4 |
211.8 |
174.1 |
C4 |
C3 |
C7 |
O3 |
31.0 |
354.1 |
C3 |
C4 |
N3 |
C8 |
177.4 |
185.6 |
C3 |
C4 |
N3 |
HN3 |
297.3 |
5.5 |
N3 |
C4 |
C3 |
C5 |
180.2 |
180.0 |
C3 |
C4 |
C5 |
C6 |
359.9 |
359.7 |
C3 |
C4 |
C5 |
H5 |
179.9 |
180.0 |
C7 |
C3 |
C2 |
H2 |
0.4 |
0.0 |
C2 |
C3 |
C7 |
C4 |
179.4 |
179.9 |
C3 |
C7 |
N2 |
HN2 |
179.2 |
0.1 |
C3 |
C7 |
N2 |
HN2A |
359.2 |
180.0 |
N2 |
C7 |
C3 |
O3 |
180.8 |
179.9 |
C7 |
C3 |
C4 |
N3 |
359.8 |
0.0 |
C7 |
C3 |
C4 |
C5 |
179.7 |
180.0 |
N3 |
C4 |
C3 |
C7 |
359.8 |
0.0 |
C3 |
C4 |
N3 |
C5 |
179.8 |
180.0 |
C8 |
N3 |
C4 |
HN3 |
240.0 |
180.1 |
C4 |
N3 |
C8 |
C9 |
81.5 |
180.0 |
C4 |
N3 |
C8 |
H8 |
201.5 |
299.9 |
C4 |
N3 |
C8 |
H8A |
321.4 |
60.1 |
N3 |
C4 |
C5 |
C6 |
179.7 |
179.7 |
N3 |
C4 |
C5 |
H5 |
359.7 |
0.0 |
C4 |
N3 |
C8 |
HN3 |
120.0 |
179.9 |
C8 |
N3 |
C4 |
C5 |
357.5 |
5.6 |
C9 |
C8 |
N3 |
H8 |
240.0 |
240.0 |
C9 |
C8 |
N3 |
H8A |
120.0 |
119.9 |
N3 |
C8 |
C9 |
C10 |
224.2 |
90.0 |
N3 |
C8 |
C9 |
C14 |
44.3 |
269.7 |
H8 |
C8 |
N3 |
H8A |
240.0 |
239.9 |
C4 |
N3 |
HN3 |
C8 |
224.8 |
180.1 |
HN3 |
N3 |
C4 |
C5 |
117.5 |
185.5 |
HN3 |
N3 |
C8 |
C9 |
321.5 |
0.0 |
HN3 |
N3 |
C8 |
H8 |
81.5 |
120.0 |
HN3 |
N3 |
C8 |
H8A |
201.5 |
240.1 |
O3 |
C7 |
N2 |
HN2 |
0.0 |
180.0 |
O3 |
C7 |
N2 |
HN2A |
180.0 |
359.9 |
N2 |
C7 |
O3 |
C3 |
179.2 |
180.1 |
C1 |
C6 |
C5 |
C4 |
359.8 |
0.5 |
C5 |
C4 |
C3 |
C7 |
179.7 |
180.0 |
C3 |
C4 |
C5 |
N3 |
180.2 |
180.0 |
C5 |
C4 |
N3 |
C8 |
357.5 |
5.6 |
C5 |
C4 |
N3 |
HN3 |
117.5 |
185.5 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
H6 |
179.8 |
180.3 |
HN4 |
N4 |
C15 |
HN4A |
240.0 |
236.0 |
C11 |
C12 |
C15 |
N4 |
284.8 |
90.0 |
C13 |
C12 |
C15 |
N4 |
104.9 |
270.0 |
C12 |
C15 |
N4 |
H15 |
240.0 |
239.9 |
C12 |
C15 |
N4 |
H15A |
120.0 |
120.0 |
H15 |
C15 |
N4 |
H15A |
240.0 |
240.1 |
C15 |
N4 |
HN4 |
HN4A |
120.0 |
124.0 |
HN4 |
N4 |
C15 |
C12 |
180.0 |
180.0 |
HN4 |
N4 |
C15 |
H15 |
300.0 |
300.0 |
HN4 |
N4 |
C15 |
H15A |
60.0 |
60.0 |
C15 |
N4 |
HN4A |
HN4 |
240.0 |
236.0 |
HN4A |
N4 |
C15 |
C12 |
300.0 |
303.9 |
HN4A |
N4 |
C15 |
H15 |
60.0 |
64.0 |
HN4A |
N4 |
C15 |
H15A |
180.0 |
183.9 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
H5 |
C5 |
C6 |
H6 |
359.8 |
360.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
H6 |
C6 |
C5 |
H5 |
359.8 |
360.0 |
C9 |
C8 |
N3 |
HN3 |
321.5 |
0.0 |
N3 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
N3 |
C8 |
C9 |
H8A |
240.0 |
240.0 |
H8 |
C8 |
C9 |
H8A |
120.0 |
120.0 |
C10 |
C9 |
C8 |
C14 |
179.9 |
180.2 |
C8 |
C9 |
C10 |
C11 |
179.9 |
180.0 |
C8 |
C9 |
C10 |
H10 |
359.9 |
0.0 |
C8 |
C9 |
C14 |
C13 |
180.1 |
179.8 |
C8 |
C9 |
C14 |
H14 |
0.1 |
360.0 |
H8 |
C8 |
N3 |
HN3 |
81.5 |
120.0 |
N3 |
C8 |
H8 |
C9 |
236.1 |
240.0 |
N3 |
C8 |
H8 |
H8A |
118.0 |
120.1 |
C9 |
C8 |
H8 |
H8A |
242.0 |
240.0 |
H8 |
C8 |
C9 |
C10 |
104.2 |
330.0 |
H8 |
C8 |
C9 |
C14 |
284.3 |
149.7 |
H8A |
C8 |
N3 |
HN3 |
201.5 |
240.1 |
N3 |
C8 |
H8A |
C9 |
123.9 |
119.9 |
N3 |
C8 |
H8A |
H8 |
242.0 |
239.9 |
C9 |
C8 |
H8A |
H8 |
118.0 |
120.0 |
H8A |
C8 |
C9 |
C10 |
344.3 |
209.9 |
H8A |
C8 |
C9 |
C14 |
164.3 |
29.7 |
C10 |
C9 |
C8 |
H8 |
104.2 |
330.0 |
C10 |
C9 |
C8 |
H8A |
344.3 |
209.9 |
C8 |
C9 |
C10 |
C14 |
180.1 |
179.8 |
C10 |
C9 |
C14 |
C13 |
0.1 |
359.6 |
C10 |
C9 |
C14 |
H14 |
180.1 |
179.8 |
C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
C12 |
0.0 |
0.0 |
C9 |
C10 |
C11 |
H11 |
180.0 |
180.0 |
C14 |
C9 |
C8 |
H8 |
284.3 |
149.7 |
C14 |
C9 |
C8 |
H8A |
164.3 |
29.7 |
C8 |
C9 |
C14 |
C10 |
179.9 |
180.2 |
C14 |
C9 |
C10 |
C11 |
359.9 |
0.2 |
C14 |
C9 |
C10 |
H10 |
179.8 |
180.3 |
C12 |
C13 |
C14 |
C9 |
360.0 |
0.4 |
C9 |
C14 |
C13 |
H13 |
180.0 |
180.3 |
C13 |
C14 |
C9 |
H14 |
180.0 |
179.8 |
C11 |
C10 |
C9 |
C14 |
359.9 |
0.2 |
C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
C13 |
0.1 |
360.0 |
C10 |
C11 |
C12 |
C15 |
180.2 |
180.0 |
H10 |
C10 |
C9 |
C14 |
179.8 |
180.3 |
C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
H10 |
C10 |
C11 |
C12 |
180.1 |
180.0 |
H10 |
C10 |
C11 |
H11 |
0.0 |
360.0 |
N4 |
C15 |
C12 |
C11 |
284.8 |
90.0 |
C12 |
C11 |
C10 |
H10 |
180.1 |
180.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
C15 |
179.9 |
180.0 |
C11 |
C12 |
C13 |
C14 |
359.9 |
359.8 |
C11 |
C12 |
C13 |
H13 |
179.9 |
180.0 |
C11 |
C12 |
C15 |
H15 |
164.8 |
330.0 |
C11 |
C12 |
C15 |
H15A |
44.8 |
210.0 |
H11 |
C11 |
C10 |
H10 |
0.0 |
360.0 |
C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
C11 |
C12 |
C13 |
180.1 |
180.0 |
H11 |
C11 |
C12 |
C15 |
0.2 |
360.0 |
N4 |
C15 |
C12 |
C13 |
104.9 |
270.0 |
C9 |
C14 |
C13 |
C12 |
360.0 |
0.4 |
C13 |
C12 |
C11 |
H11 |
180.1 |
180.0 |
C11 |
C12 |
C13 |
C15 |
180.1 |
180.0 |
C13 |
C12 |
C15 |
H15 |
344.9 |
150.0 |
C13 |
C12 |
C15 |
H15A |
224.9 |
30.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
179.8 |
C12 |
C13 |
C14 |
H14 |
180.0 |
180.2 |
C12 |
C15 |
N4 |
HN4 |
180.0 |
180.0 |
C12 |
C15 |
N4 |
HN4A |
300.0 |
303.9 |
N4 |
C15 |
C12 |
H15 |
120.0 |
120.0 |
N4 |
C15 |
C12 |
H15A |
240.0 |
240.0 |
C15 |
C12 |
C11 |
H11 |
0.2 |
360.0 |
C11 |
C12 |
C15 |
C13 |
179.9 |
180.0 |
C15 |
C12 |
C13 |
C14 |
179.8 |
179.8 |
C15 |
C12 |
C13 |
H13 |
359.8 |
360.0 |
H15 |
C15 |
C12 |
H15A |
120.0 |
120.0 |
C9 |
C14 |
C13 |
H14 |
180.0 |
180.2 |
C14 |
C13 |
C12 |
C15 |
179.8 |
179.8 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.2 |
H13 |
C13 |
C12 |
C15 |
359.8 |
360.0 |
C12 |
C13 |
H13 |
C14 |
180.0 |
179.8 |
H13 |
C13 |
C14 |
H14 |
360.0 |
0.1 |
C9 |
C14 |
H14 |
C13 |
180.0 |
179.8 |
H14 |
C14 |
C13 |
H13 |
360.0 |
0.1 |
H15 |
C15 |
N4 |
HN4 |
300.0 |
300.0 |
H15 |
C15 |
N4 |
HN4A |
60.0 |
64.0 |
N4 |
C15 |
H15 |
C12 |
237.1 |
240.0 |
N4 |
C15 |
H15 |
H15A |
118.6 |
119.9 |
C12 |
C15 |
H15 |
H15A |
241.5 |
240.0 |
H15A |
C15 |
N4 |
HN4 |
60.0 |
60.0 |
H15A |
C15 |
N4 |
HN4A |
180.0 |
183.9 |
N4 |
C15 |
H15A |
C12 |
122.9 |
120.0 |
N4 |
C15 |
H15A |
H15 |
241.4 |
240.1 |
C12 |
C15 |
H15A |
H15 |
118.5 |
120.1 |