PDB Chemical Component X8Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X8Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C4	1.271	1.212
C4	C2	1.531	1.507
C4	N	1.351	1.348
C2	C1	1.533	1.530
C2	C3	1.537	1.530
C1	S	1.794	1.814
N	C8	1.510	1.470
N	C5	1.510	1.475
C8	C9	1.546	1.507
C8	C7	1.504	1.543
C9	O3	1.215	1.208
C9	O2	1.287	1.342
C5	C6	1.485	1.549
C6	C7	1.501	1.551
C2	H2	1.099	1.091
C1	H11C	1.100	1.090
C1	H12C	1.100	1.090
C3	H31C	1.100	1.090
C3	H32C	1.100	1.090
C3	H33C	1.100	1.091
S	H	1.300	1.345
C8	H8	1.099	1.090
C5	H51C	1.101	1.090
C5	H52C	1.101	1.090
C7	H71C	1.100	1.090
C7	H72C	1.100	1.089
O2	HA	0.950	0.967
C6	H61C	1.100	1.090
C6	H62C	1.100	1.090

Bond Angles for X8Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C4	C2	118.8	120.0
O1	C4	N	119.2	120.0
C2	C4	N	122.0	120.0
C4	C2	C1	108.3	109.5
C4	C2	C3	107.4	109.5
C4	C2	H2	112.9	109.5
C4	N	C8	122.2	125.7
C4	N	C5	128.2	125.6
C1	C2	C3	113.1	109.5
C2	C1	S	114.6	109.5
C1	C2	H2	107.2	109.4
C2	C1	H11C	107.8	109.5
C2	C1	H12C	106.6	109.4
C3	C2	H2	108.1	109.5
C2	C3	H31C	109.5	109.5
C2	C3	H32C	109.5	109.5
C2	C3	H33C	109.4	109.5
S	C1	H11C	107.8	109.5
S	C1	H12C	106.6	109.5
C1	S	H	109.5	103.0
C8	N	C5	109.6	108.7
N	C8	C9	110.8	109.9
N	C8	C7	105.7	107.3
N	C8	H8	111.5	109.8
N	C5	C6	106.4	104.8
N	C5	H51C	110.5	110.4
N	C5	H52C	111.2	110.3
C9	C8	C7	110.8	109.9
C8	C9	O3	122.2	120.0
C8	C9	O2	116.5	120.0
C9	C8	H8	106.5	109.9
C8	C7	C6	108.3	102.9
C7	C8	H8	111.6	110.0
C8	C7	H71C	109.9	110.7
C8	C7	H72C	110.1	110.7
O3	C9	O2	121.2	120.0
C9	O2	HA	109.5	117.1
C5	C6	C7	108.7	101.6
C6	C5	H51C	110.5	110.3
C6	C5	H52C	111.2	110.4
C5	C6	H61C	109.7	111.0
C5	C6	H62C	109.9	111.0
C6	C7	H71C	109.9	110.8
C6	C7	H72C	110.1	110.6
C7	C6	H61C	109.7	110.9
C7	C6	H62C	109.9	111.0
H11C	C1	H12C	113.6	109.5
H31C	C3	H32C	109.5	109.5
H31C	C3	H33C	109.5	109.4
H32C	C3	H33C	109.5	109.4
H51C	C5	H52C	107.1	110.4
H71C	C7	H72C	108.6	110.9
H61C	C6	H62C	108.9	110.9

Torsion Angles for X8Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C4	O1	N	180.6	180.3
O1	C4	C2	C1	329.2	0.0
O1	C4	C2	C3	91.6	120.1
O1	C4	C2	H2	210.6	240.0
O1	C4	N	C8	359.0	360.0
O1	C4	N	C5	180.1	179.7
O1	C4	C2	N	179.4	179.7
C2	C4	N	C8	178.4	179.7
C2	C4	N	C5	359.4	359.4
C1	C2	C4	C3	237.6	239.9
C4	C2	C1	S	275.6	185.0
C1	C2	C4	H2	118.5	120.0
C4	C2	C1	H11C	35.6	305.0
C4	C2	C1	H12C	157.8	65.0
C3	C2	C4	H2	240.9	240.0
C4	C2	C3	H31C	274.2	59.9
C4	C2	C3	H32C	34.2	180.0
C4	C2	C3	H33C	154.2	300.0
O1	C4	N	C2	180.6	180.3
N	C4	C2	C1	149.8	180.3
N	C4	C2	C3	272.2	300.3
N	C4	C2	H2	31.2	60.3
C8	N	C4	C5	178.9	180.3
C4	N	C8	C9	295.4	298.3
C4	N	C8	C7	175.3	178.9
C4	N	C8	H8	53.9	59.3
C4	N	C5	C6	177.5	204.2
C4	N	C5	H51C	297.5	323.0
C4	N	C5	H52C	56.3	85.3
C1	C2	C4	N	149.8	180.3
C4	C2	C1	C3	118.8	120.0
C4	C2	C1	H2	237.9	240.0
C3	C2	C1	H2	119.1	120.0
C1	C2	C3	H31C	33.5	180.0
C1	C2	C3	H32C	153.6	300.1
C1	C2	C3	H33C	273.6	60.0
S	C1	C2	H11C	240.0	240.0
S	C1	C2	H12C	117.7	120.0
C2	C1	S	H	338.0	180.0
H11C	C1	C2	H12C	237.7	240.0
C3	C2	C4	N	272.2	300.3
C4	C2	C3	C1	240.6	240.0
C4	C2	C3	H2	122.1	120.0
C3	C2	C1	S	156.7	65.0
C1	C2	C3	H2	241.5	240.0
C3	C2	C1	H11C	276.7	185.0
C3	C2	C1	H12C	39.0	305.0
H31C	C3	C2	H32C	240.0	239.9
H31C	C3	C2	H33C	120.0	120.0
H32C	C3	C2	H33C	240.0	240.1
S	C1	C2	C3	156.7	65.0
S	C1	C2	H2	37.7	305.0
C2	C1	S	H11C	120.0	120.0
C2	C1	S	H12C	242.3	240.0
H11C	C1	S	H12C	122.3	120.0
C4	N	C8	C5	180.9	179.7
C8	N	C5	C6	358.5	23.9
C8	N	C5	H51C	118.5	142.7
C8	N	C5	H52C	237.3	265.0
C9	C8	N	C7	120.1	119.5
N	C8	C9	O3	339.0	360.0
N	C8	C9	O2	158.9	180.0
C9	C8	N	H8	241.5	239.0
N	C8	C7	C6	10.5	337.7
C7	C8	N	H8	121.4	119.6
N	C8	C7	H71C	130.5	96.1
N	C8	C7	H72C	250.1	219.5
C4	N	C5	C8	179.0	180.3
C5	N	C8	C9	114.5	118.6
C5	N	C8	C7	354.4	359.2
C5	N	C8	H8	233.0	239.6
N	C5	C6	C7	8.1	323.1
C6	C5	N	H51C	240.0	241.2
C6	C5	N	H52C	121.2	118.9
N	C5	C6	H61C	128.2	81.1
N	C5	C6	H62C	247.8	205.0
H51C	C5	N	H52C	241.2	237.7
C9	C8	N	C5	114.5	118.6
N	C8	C9	C7	243.0	242.1
N	C8	C9	H8	121.5	120.9
C9	C8	C7	C6	250.4	218.2
C7	C8	C9	H8	238.5	238.8
C9	C8	C7	H71C	10.4	336.7
C9	C8	C7	H72C	130.0	100.0
O3	C9	C8	O2	180.1	180.0
C8	C9	O2	HA	180.1	180.0
C7	C8	N	C5	354.4	359.2
N	C8	C7	C9	120.1	119.4
N	C8	C7	H8	238.6	240.5
C7	C8	C9	O3	96.0	117.8
C7	C8	C9	O2	275.9	297.8
C9	C8	C7	H8	118.5	121.1
C5	C6	C7	C8	348.1	35.5
C6	C7	C8	H71C	240.0	241.5
C6	C7	C8	H72C	120.5	118.2
C8	C7	C6	H61C	228.1	277.4
C8	C7	C6	H62C	108.4	153.6
H71C	C7	C8	H72C	240.5	236.7
O3	C9	C8	C7	96.0	117.8
C8	C9	O3	O2	179.9	180.0
O3	C9	C8	H8	217.5	239.0
O3	C9	O2	HA	360.0	360.0
O2	C9	C8	C7	275.9	297.8
C8	C9	O2	O3	180.1	180.0
O2	C9	C8	H8	37.4	59.0
N	C5	C6	H51C	120.0	118.9
N	C5	C6	H52C	238.8	241.2
C8	C7	C6	C5	348.1	35.5
C5	C6	C7	H71C	228.1	277.2
C5	C6	C7	H72C	108.6	153.8
C7	C6	C5	H61C	240.0	242.0
C7	C6	C5	H62C	120.3	118.1
H51C	C5	C6	H52C	118.8	122.3
H61C	C6	C5	H62C	240.3	236.1
C6	C7	C8	H8	131.9	97.1
C8	C7	C6	H71C	120.0	118.4
C8	C7	C6	H72C	239.5	241.7
C7	C6	C5	H51C	248.2	204.2
C7	C6	C5	H52C	129.3	81.9
C5	C6	C7	H61C	120.0	118.1
C5	C6	C7	H62C	239.7	241.9
H71C	C7	C6	H72C	119.5	123.4
H61C	C6	C7	H62C	119.7	123.8
H2	C2	C4	N	31.2	60.3
C4	C2	H2	C1	119.2	120.0
C4	C2	H2	C3	241.4	240.0
C1	C2	H2	C3	122.2	120.0
H2	C2	C1	S	37.7	305.0
H2	C2	C1	H11C	157.7	65.0
H2	C2	C1	H12C	279.9	185.0
H2	C2	C3	H31C	152.1	300.0
H2	C2	C3	H32C	272.1	60.1
H2	C2	C3	H33C	32.1	180.0
H11C	C1	C2	C3	276.7	185.0
C2	C1	H11C	S	235.8	240.0
H11C	C1	C2	H2	157.7	65.0
C2	C1	H11C	H12C	117.9	120.0
S	C1	H11C	H12C	242.1	240.0
H11C	C1	S	H	218.0	60.0
H12C	C1	C2	C3	39.0	305.0
C2	C1	H12C	S	122.8	120.0
H12C	C1	C2	H2	279.9	185.0
C2	C1	H12C	H11C	241.4	240.0
S	C1	H12C	H11C	118.6	120.0
H12C	C1	S	H	95.7	300.0
H31C	C3	C2	H2	152.1	300.0
C2	C3	H31C	H32C	120.0	120.1
C2	C3	H31C	H33C	240.0	240.0
H32C	C3	H31C	H33C	120.0	120.0
H32C	C3	C2	H2	272.1	60.1
C2	C3	H32C	H31C	240.0	239.9
C2	C3	H32C	H33C	119.9	120.0
H31C	C3	H32C	H33C	240.0	240.0
H33C	C3	C2	H2	32.1	180.0
C2	C3	H33C	H31C	120.0	120.0
C2	C3	H33C	H32C	240.0	240.0
H31C	C3	H33C	H32C	120.0	120.0
H	S	C1	H11C	218.0	60.0
H	S	C1	H12C	95.7	300.0
H8	C8	N	C5	233.0	239.6
N	C8	H8	C9	239.0	239.1
N	C8	H8	C7	117.9	117.9
C9	C8	H8	C7	239.0	238.9
H8	C8	C9	O3	217.5	239.0
H8	C8	C9	O2	37.4	59.0
H8	C8	C7	C6	131.9	97.1
H8	C8	C7	H71C	251.9	215.6
H8	C8	C7	H72C	11.5	338.9
N	C5	H51C	C6	242.5	244.6
N	C5	H51C	H52C	121.2	122.3
H51C	C5	C6	C7	248.2	204.2
C6	C5	H51C	H52C	238.7	237.7
H51C	C5	C6	H61C	8.2	322.2
H51C	C5	C6	H62C	127.8	86.1
N	C5	H52C	C6	118.3	115.4
N	C5	H52C	H51C	239.2	237.7
H52C	C5	C6	C7	129.3	81.9
C6	C5	H52C	H51C	120.8	122.3
H52C	C5	C6	H61C	249.3	199.9
H52C	C5	C6	H62C	9.0	323.8
C8	C7	H71C	C6	241.0	246.5
H71C	C7	C8	H8	251.9	215.6
C8	C7	H71C	H72C	120.5	123.3
C6	C7	H71C	H72C	239.5	236.8
H71C	C7	C6	H61C	108.1	159.1
H71C	C7	C6	H62C	348.4	35.2
C8	C7	H72C	C6	119.3	113.4
H72C	C7	C8	H8	11.5	338.9
C8	C7	H72C	H71C	239.7	236.7
C6	C7	H72C	H71C	120.3	123.3
H72C	C7	C6	H61C	348.6	35.7
H72C	C7	C6	H62C	228.9	271.9
C5	C6	H61C	C7	240.6	247.8
H61C	C6	C5	H51C	8.2	322.2
H61C	C6	C5	H52C	249.3	199.9
C5	C6	H61C	H62C	120.3	123.9
H61C	C6	C7	H71C	108.1	159.1
H61C	C6	C7	H72C	348.6	35.7
C7	C6	H61C	H62C	239.7	236.1
C5	C6	H62C	C7	119.6	112.3
H62C	C6	C5	H51C	127.8	86.1
H62C	C6	C5	H52C	9.0	323.8
C5	C6	H62C	H61C	239.8	236.1
H62C	C6	C7	H71C	348.4	35.2
H62C	C6	C7	H72C	228.9	271.9
C7	C6	H62C	H61C	120.2	123.8