PDB Chemical Component X8I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X8I
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C18 |
C17 |
1.378 |
1.380 |
C18 |
C19 |
1.376 |
1.383 |
C17 |
C16 |
1.382 |
1.393 |
C14 |
C15 |
1.375 |
1.379 |
C14 |
C13 |
1.377 |
1.396 |
C15 |
C10 |
1.374 |
1.389 |
C19 |
C20 |
1.375 |
1.388 |
C12 |
C13 |
1.382 |
1.389 |
C12 |
C11 |
1.383 |
1.396 |
C21 |
C16 |
1.381 |
1.393 |
C21 |
C20 |
1.379 |
1.385 |
C13 |
C16 |
1.452 |
1.484 |
C11 |
C10 |
1.376 |
1.405 |
C11 |
C2 |
1.462 |
1.468 |
C10 |
N9 |
1.404 |
1.391 |
C20 |
O22 |
1.379 |
1.359 |
C3 |
C2 |
1.339 |
1.349 |
C3 |
C4 |
1.472 |
1.465 |
C2 |
C1 |
1.489 |
1.507 |
C4 |
N5 |
1.306 |
1.311 |
C4 |
N9 |
1.281 |
1.382 |
C7 |
N6 |
1.362 |
1.348 |
C7 |
N9 |
1.540 |
1.349 |
C7 |
O8 |
1.224 |
1.218 |
N5 |
N6 |
1.371 |
1.401 |
C18 |
H18 |
1.080 |
1.080 |
C17 |
H17 |
1.080 |
1.080 |
C19 |
H19 |
1.080 |
1.080 |
C14 |
H14 |
1.080 |
1.080 |
C15 |
H15 |
1.080 |
1.080 |
C12 |
H12 |
1.080 |
1.079 |
C21 |
H21 |
1.080 |
1.080 |
O22 |
H22 |
0.950 |
0.967 |
C3 |
H3 |
1.080 |
1.080 |
C1 |
H11C |
1.100 |
1.090 |
C1 |
H12C |
1.100 |
1.090 |
C1 |
H13C |
1.100 |
1.090 |
N6 |
H6 |
1.000 |
0.971 |
Bond Angles for X8I
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C17 |
C18 |
C19 |
120.4 |
120.1 |
C18 |
C17 |
C16 |
121.2 |
120.0 |
C17 |
C18 |
H18 |
119.8 |
119.9 |
C18 |
C17 |
H17 |
119.4 |
120.0 |
C18 |
C19 |
C20 |
118.6 |
120.2 |
C19 |
C18 |
H18 |
119.8 |
119.9 |
C18 |
C19 |
H19 |
120.7 |
119.9 |
C17 |
C16 |
C21 |
118.2 |
119.8 |
C17 |
C16 |
C13 |
121.4 |
120.1 |
C16 |
C17 |
H17 |
119.4 |
120.0 |
C15 |
C14 |
C13 |
121.1 |
120.4 |
C14 |
C15 |
C10 |
119.6 |
120.2 |
C15 |
C14 |
H14 |
119.4 |
119.8 |
C14 |
C15 |
H15 |
120.2 |
119.9 |
C14 |
C13 |
C12 |
118.4 |
120.1 |
C14 |
C13 |
C16 |
119.9 |
120.0 |
C13 |
C14 |
H14 |
119.4 |
119.8 |
C15 |
C10 |
C11 |
120.6 |
119.8 |
C15 |
C10 |
N9 |
121.0 |
120.1 |
C10 |
C15 |
H15 |
120.2 |
119.9 |
C19 |
C20 |
C21 |
121.3 |
120.0 |
C19 |
C20 |
O22 |
119.2 |
120.0 |
C20 |
C19 |
H19 |
120.7 |
119.9 |
C13 |
C12 |
C11 |
121.2 |
119.7 |
C12 |
C13 |
C16 |
121.7 |
119.9 |
C13 |
C12 |
H12 |
119.4 |
120.2 |
C12 |
C11 |
C10 |
119.0 |
119.9 |
C12 |
C11 |
C2 |
121.7 |
120.3 |
C11 |
C12 |
H12 |
119.4 |
120.2 |
C16 |
C21 |
C20 |
120.3 |
119.8 |
C21 |
C16 |
C13 |
120.4 |
120.1 |
C16 |
C21 |
H21 |
119.9 |
120.1 |
C21 |
C20 |
O22 |
119.5 |
120.0 |
C20 |
C21 |
H21 |
119.8 |
120.1 |
C10 |
C11 |
C2 |
119.3 |
119.8 |
C11 |
C10 |
N9 |
118.4 |
120.1 |
C11 |
C2 |
C3 |
120.4 |
119.4 |
C11 |
C2 |
C1 |
118.5 |
120.3 |
C10 |
N9 |
C4 |
123.0 |
120.5 |
C10 |
N9 |
C7 |
131.8 |
131.3 |
C20 |
O22 |
H22 |
109.5 |
114.0 |
C2 |
C3 |
C4 |
117.5 |
119.8 |
C3 |
C2 |
C1 |
121.1 |
120.3 |
C2 |
C3 |
H3 |
121.2 |
120.1 |
C3 |
C4 |
N5 |
124.7 |
131.3 |
C3 |
C4 |
N9 |
121.4 |
120.4 |
C4 |
C3 |
H3 |
121.3 |
120.1 |
C2 |
C1 |
H11C |
109.5 |
109.5 |
C2 |
C1 |
H12C |
109.4 |
109.5 |
C2 |
C1 |
H13C |
109.5 |
109.5 |
N5 |
C4 |
N9 |
113.9 |
108.4 |
C4 |
N5 |
N6 |
108.7 |
108.0 |
C4 |
N9 |
C7 |
105.1 |
108.2 |
N6 |
C7 |
N9 |
102.7 |
107.8 |
N6 |
C7 |
O8 |
134.2 |
126.1 |
C7 |
N6 |
N5 |
109.5 |
107.6 |
C7 |
N6 |
H6 |
125.3 |
126.2 |
N9 |
C7 |
O8 |
123.1 |
126.1 |
N5 |
N6 |
H6 |
125.3 |
126.2 |
H11C |
C1 |
H12C |
109.5 |
109.4 |
H11C |
C1 |
H13C |
109.4 |
109.5 |
H12C |
C1 |
H13C |
109.5 |
109.5 |
Torsion Angles for X8I
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C17 |
C18 |
C19 |
C20 |
0.0 |
0.0 |
C19 |
C18 |
C17 |
H18 |
180.0 |
180.2 |
C17 |
C18 |
C19 |
H19 |
180.0 |
180.1 |
C18 |
C17 |
C16 |
C21 |
359.4 |
0.0 |
C18 |
C17 |
C16 |
C13 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
179.9 |
C19 |
C18 |
C17 |
C16 |
0.3 |
360.0 |
C17 |
C18 |
C19 |
H18 |
180.0 |
179.8 |
C19 |
C18 |
C17 |
H17 |
180.3 |
180.0 |
C18 |
C19 |
C20 |
C21 |
359.9 |
360.0 |
C18 |
C19 |
C20 |
O22 |
180.0 |
179.9 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
C19 |
0.3 |
360.0 |
C16 |
C17 |
C18 |
H18 |
180.3 |
179.7 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.1 |
C14 |
C13 |
C16 |
C17 |
38.8 |
180.0 |
C12 |
C13 |
C16 |
C17 |
217.4 |
0.0 |
C17 |
C16 |
C21 |
C20 |
0.5 |
360.0 |
C21 |
C16 |
C17 |
C13 |
179.5 |
180.0 |
C17 |
C16 |
C21 |
H21 |
180.5 |
180.0 |
C15 |
C14 |
C13 |
C12 |
359.9 |
360.0 |
C15 |
C14 |
C13 |
C16 |
178.6 |
180.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.3 |
C14 |
C15 |
C10 |
C11 |
0.1 |
360.0 |
C14 |
C15 |
C10 |
N9 |
181.1 |
180.0 |
C10 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
C17 |
C16 |
C13 |
C14 |
38.8 |
180.0 |
C13 |
C14 |
C15 |
C10 |
359.9 |
0.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
179.7 |
C13 |
C14 |
C15 |
H15 |
179.9 |
180.0 |
C14 |
C13 |
C12 |
C11 |
0.2 |
0.0 |
C12 |
C13 |
C14 |
C16 |
181.3 |
180.0 |
C14 |
C13 |
C12 |
H12 |
180.3 |
180.0 |
C21 |
C16 |
C13 |
C14 |
219.3 |
360.0 |
C10 |
C15 |
C14 |
C13 |
359.9 |
0.0 |
C10 |
C15 |
C14 |
H14 |
180.0 |
179.7 |
C14 |
C15 |
C10 |
H15 |
180.0 |
179.9 |
C12 |
C11 |
C10 |
C15 |
0.1 |
0.0 |
C15 |
C10 |
C11 |
C2 |
180.4 |
180.0 |
C11 |
C10 |
C15 |
N9 |
178.9 |
180.0 |
C15 |
C10 |
N9 |
C4 |
177.8 |
180.0 |
C15 |
C10 |
N9 |
C7 |
1.3 |
0.1 |
C20 |
C19 |
C18 |
H18 |
180.0 |
180.3 |
C18 |
C19 |
C20 |
H19 |
180.0 |
180.0 |
C16 |
C21 |
C20 |
C19 |
359.8 |
0.0 |
C21 |
C20 |
C19 |
O22 |
179.9 |
180.0 |
C19 |
C20 |
C21 |
H21 |
179.8 |
180.0 |
C19 |
C20 |
O22 |
H22 |
201.7 |
90.0 |
C17 |
C16 |
C13 |
C12 |
217.4 |
0.0 |
C14 |
C13 |
C12 |
C16 |
178.7 |
180.0 |
C12 |
C13 |
C14 |
H14 |
179.9 |
180.3 |
C13 |
C12 |
C11 |
C10 |
359.8 |
360.0 |
C13 |
C12 |
C11 |
C2 |
179.4 |
180.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
C21 |
C16 |
C13 |
C12 |
38.0 |
180.0 |
C15 |
C10 |
C11 |
C12 |
0.1 |
0.0 |
C11 |
C12 |
C13 |
C16 |
181.6 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
C10 |
C11 |
C12 |
C2 |
180.4 |
180.0 |
C12 |
C11 |
C10 |
N9 |
179.0 |
180.0 |
C12 |
C11 |
C2 |
C3 |
181.4 |
180.0 |
C12 |
C11 |
C2 |
C1 |
1.5 |
360.0 |
C17 |
C16 |
C21 |
C13 |
180.5 |
180.0 |
C21 |
C16 |
C17 |
H17 |
179.4 |
180.0 |
C14 |
C13 |
C16 |
C21 |
219.3 |
360.0 |
C19 |
C20 |
C21 |
C16 |
359.8 |
0.0 |
C12 |
C13 |
C16 |
C21 |
38.0 |
180.0 |
C16 |
C21 |
C20 |
O22 |
179.7 |
180.1 |
C20 |
C21 |
C16 |
H21 |
180.0 |
180.0 |
C19 |
C20 |
C21 |
O22 |
180.1 |
180.0 |
C21 |
C20 |
C19 |
H19 |
179.9 |
179.9 |
C20 |
C21 |
C16 |
C13 |
180.0 |
180.0 |
C16 |
C21 |
C20 |
H21 |
180.0 |
180.0 |
C21 |
C20 |
O22 |
H22 |
21.8 |
270.0 |
C17 |
C16 |
C13 |
C21 |
179.5 |
180.0 |
C13 |
C16 |
C17 |
H17 |
359.9 |
360.0 |
C14 |
C13 |
C16 |
C12 |
181.3 |
180.0 |
C16 |
C13 |
C14 |
H14 |
358.6 |
0.3 |
C16 |
C13 |
C12 |
C11 |
181.6 |
180.0 |
C16 |
C13 |
C12 |
H12 |
1.6 |
359.9 |
C13 |
C16 |
C21 |
C20 |
180.0 |
180.0 |
C13 |
C16 |
C21 |
H21 |
360.0 |
0.0 |
C15 |
C10 |
C11 |
N9 |
181.0 |
180.0 |
C11 |
C10 |
C15 |
H15 |
180.1 |
180.0 |
C12 |
C11 |
C10 |
C2 |
179.6 |
180.0 |
C10 |
C11 |
C12 |
H12 |
179.8 |
180.0 |
C10 |
C11 |
C2 |
C3 |
1.0 |
360.0 |
C10 |
C11 |
C2 |
C1 |
181.1 |
180.0 |
C11 |
C10 |
N9 |
C4 |
358.8 |
360.0 |
C11 |
C10 |
N9 |
C7 |
182.3 |
180.1 |
C12 |
C11 |
C2 |
C10 |
180.4 |
180.0 |
C2 |
C11 |
C12 |
H12 |
359.4 |
0.1 |
C2 |
C11 |
C10 |
N9 |
359.4 |
0.0 |
C11 |
C2 |
C3 |
C4 |
0.2 |
360.0 |
C3 |
C2 |
C11 |
C1 |
179.9 |
180.0 |
C11 |
C2 |
C3 |
H3 |
180.2 |
180.0 |
C11 |
C2 |
C1 |
H11C |
131.6 |
90.0 |
C11 |
C2 |
C1 |
H12C |
251.6 |
209.9 |
C11 |
C2 |
C1 |
H13C |
11.6 |
330.0 |
C15 |
C10 |
N9 |
C11 |
179.0 |
180.0 |
N9 |
C10 |
C15 |
H15 |
1.1 |
0.0 |
N9 |
C10 |
C11 |
C2 |
359.4 |
0.0 |
C3 |
C4 |
N9 |
C10 |
2.5 |
360.0 |
N5 |
C4 |
N9 |
C10 |
182.1 |
180.0 |
C4 |
N9 |
C10 |
C7 |
176.5 |
179.9 |
N6 |
C7 |
N9 |
C10 |
177.2 |
179.9 |
C10 |
N9 |
C7 |
O8 |
356.8 |
0.0 |
C19 |
C20 |
O22 |
C21 |
179.9 |
180.0 |
O22 |
C20 |
C19 |
H19 |
0.0 |
359.9 |
O22 |
C20 |
C21 |
H21 |
359.7 |
0.0 |
C11 |
C2 |
C3 |
C1 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
N5 |
178.4 |
180.0 |
C2 |
C3 |
C4 |
N9 |
358.0 |
0.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
H11C |
311.7 |
270.0 |
C3 |
C2 |
C1 |
H12C |
71.7 |
29.9 |
C3 |
C2 |
C1 |
H13C |
191.7 |
150.0 |
C10 |
N9 |
C4 |
C3 |
2.5 |
360.0 |
C4 |
C3 |
C2 |
C1 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
N5 |
C4 |
C3 |
N9 |
180.4 |
180.0 |
C3 |
C4 |
N5 |
N6 |
180.3 |
180.1 |
C3 |
C4 |
N9 |
C7 |
179.8 |
179.9 |
C11 |
C2 |
C1 |
C3 |
179.9 |
180.0 |
C1 |
C2 |
C3 |
C4 |
180.1 |
180.0 |
C1 |
C2 |
C3 |
H3 |
0.1 |
360.0 |
H11C |
C1 |
C2 |
H12C |
240.0 |
240.1 |
H11C |
C1 |
C2 |
H13C |
120.0 |
120.0 |
H12C |
C1 |
C2 |
H13C |
240.0 |
240.0 |
C10 |
N9 |
C4 |
N5 |
182.1 |
180.0 |
C3 |
C4 |
N5 |
N9 |
179.6 |
180.0 |
N5 |
C4 |
C3 |
H3 |
358.4 |
0.0 |
N5 |
C4 |
N9 |
C7 |
359.4 |
359.9 |
C7 |
N6 |
N5 |
C4 |
359.6 |
359.9 |
C4 |
N5 |
N6 |
H6 |
179.5 |
180.0 |
C10 |
N9 |
C4 |
C7 |
182.7 |
180.1 |
C3 |
C4 |
N9 |
N5 |
180.4 |
180.0 |
N9 |
C4 |
C3 |
H3 |
178.0 |
180.1 |
N9 |
C4 |
N5 |
N6 |
0.7 |
0.1 |
N6 |
C7 |
N9 |
C4 |
0.3 |
0.0 |
C4 |
N9 |
C7 |
O8 |
179.8 |
180.1 |
C10 |
N9 |
C7 |
N6 |
177.2 |
179.9 |
C4 |
N5 |
N6 |
C7 |
359.6 |
359.9 |
C4 |
N9 |
C7 |
N6 |
0.3 |
0.0 |
N9 |
C7 |
N6 |
O8 |
179.5 |
180.1 |
N5 |
N6 |
C7 |
H6 |
180.0 |
180.0 |
C10 |
N9 |
C7 |
C4 |
176.9 |
179.9 |
N6 |
C7 |
N9 |
O8 |
180.4 |
179.9 |
N9 |
C7 |
N6 |
N5 |
0.1 |
0.0 |
N9 |
C7 |
N6 |
H6 |
180.1 |
180.0 |
N6 |
C7 |
O8 |
N9 |
179.4 |
180.1 |
O8 |
C7 |
N6 |
N5 |
180.6 |
180.0 |
O8 |
C7 |
N6 |
H6 |
0.6 |
359.9 |
N6 |
N5 |
C4 |
N9 |
0.7 |
0.1 |
N5 |
N6 |
C7 |
N9 |
0.1 |
0.0 |
N5 |
N6 |
C7 |
O8 |
180.6 |
180.0 |
C7 |
N6 |
N5 |
H6 |
180.0 |
180.0 |
C17 |
C18 |
H18 |
C19 |
180.0 |
180.2 |
H18 |
C18 |
C17 |
C16 |
180.3 |
179.7 |
H18 |
C18 |
C17 |
H17 |
0.3 |
359.8 |
H18 |
C18 |
C19 |
C20 |
180.0 |
180.3 |
H18 |
C18 |
C19 |
H19 |
0.0 |
0.3 |
H17 |
C17 |
C18 |
C19 |
180.3 |
180.0 |
C18 |
C17 |
H17 |
C16 |
180.0 |
179.9 |
H17 |
C17 |
C18 |
H18 |
0.3 |
359.8 |
H17 |
C17 |
C16 |
C21 |
179.4 |
180.0 |
H17 |
C17 |
C16 |
C13 |
359.9 |
360.0 |
C18 |
C19 |
H19 |
C20 |
180.0 |
180.0 |
H19 |
C19 |
C18 |
H18 |
0.0 |
0.3 |
H19 |
C19 |
C20 |
C21 |
179.9 |
179.9 |
H19 |
C19 |
C20 |
O22 |
0.0 |
359.9 |
C15 |
C14 |
H14 |
C13 |
180.0 |
180.3 |
H14 |
C14 |
C15 |
C10 |
180.0 |
179.7 |
H14 |
C14 |
C15 |
H15 |
360.0 |
359.7 |
H14 |
C14 |
C13 |
C12 |
179.9 |
180.3 |
H14 |
C14 |
C13 |
C16 |
358.6 |
0.3 |
H15 |
C15 |
C14 |
C13 |
179.9 |
180.0 |
C14 |
C15 |
H15 |
C10 |
180.0 |
180.1 |
H15 |
C15 |
C14 |
H14 |
360.0 |
359.7 |
H15 |
C15 |
C10 |
C11 |
180.1 |
180.0 |
H15 |
C15 |
C10 |
N9 |
1.1 |
0.0 |
C13 |
C12 |
H12 |
C11 |
180.0 |
180.1 |
H12 |
C12 |
C13 |
C16 |
1.6 |
359.9 |
H12 |
C12 |
C11 |
C10 |
179.8 |
180.0 |
H12 |
C12 |
C11 |
C2 |
359.4 |
0.1 |
C16 |
C21 |
H21 |
C20 |
180.0 |
180.0 |
H21 |
C21 |
C16 |
C13 |
360.0 |
0.0 |
H21 |
C21 |
C20 |
O22 |
359.7 |
0.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C2 |
C1 |
0.1 |
360.0 |
H3 |
C3 |
C4 |
N5 |
358.4 |
0.0 |
H3 |
C3 |
C4 |
N9 |
178.0 |
180.1 |
C2 |
C1 |
H11C |
H12C |
120.0 |
120.0 |
C2 |
C1 |
H11C |
H13C |
240.0 |
239.9 |
H12C |
C1 |
H11C |
H13C |
120.0 |
120.0 |
C2 |
C1 |
H12C |
H11C |
240.0 |
240.0 |
C2 |
C1 |
H12C |
H13C |
120.0 |
120.1 |
H11C |
C1 |
H12C |
H13C |
240.0 |
240.1 |
C2 |
C1 |
H13C |
H11C |
120.0 |
120.0 |
C2 |
C1 |
H13C |
H12C |
240.0 |
240.0 |
H11C |
C1 |
H13C |
H12C |
120.0 |
119.9 |
H6 |
N6 |
C7 |
N9 |
180.1 |
180.0 |
H6 |
N6 |
C7 |
O8 |
0.6 |
359.9 |
C7 |
N6 |
H6 |
N5 |
180.0 |
180.1 |