PDB Chemical Component X89
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X89
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
CBA |
1.404 |
1.429 |
| O |
CBB |
1.409 |
1.429 |
| N1 |
C1 |
1.534 |
1.466 |
| C1 |
CBA |
1.547 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C2 |
N1 |
1.350 |
1.350 |
| C5 |
N1 |
1.390 |
1.369 |
| N3 |
C2 |
1.359 |
1.305 |
| C2 |
H2 |
1.080 |
1.080 |
| N3 |
C4 |
1.413 |
1.342 |
| C4 |
C5 |
1.355 |
1.347 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.080 |
| C2A |
CL2A |
1.750 |
1.736 |
| C2B |
CL2B |
1.813 |
1.737 |
| C4A |
CL4A |
1.799 |
1.736 |
| C4B |
CL4B |
1.768 |
1.736 |
| CBA |
C1A |
1.507 |
1.507 |
| C6A |
C1A |
1.368 |
1.383 |
| C1A |
C2A |
1.377 |
1.383 |
| C6B |
C1B |
1.408 |
1.382 |
| C1B |
CBB |
1.508 |
1.507 |
| C1B |
C2B |
1.373 |
1.383 |
| C2A |
C3A |
1.383 |
1.384 |
| C3B |
C2B |
1.393 |
1.383 |
| C4A |
C3A |
1.385 |
1.383 |
| C3A |
HC3 |
1.080 |
1.080 |
| C4B |
C3B |
1.394 |
1.384 |
| C3B |
HC3A |
1.080 |
1.080 |
| C5A |
C4A |
1.400 |
1.384 |
| C5B |
C4B |
1.369 |
1.383 |
| C6A |
C5A |
1.382 |
1.382 |
| C5A |
HC5 |
1.080 |
1.080 |
| C5B |
C6B |
1.394 |
1.382 |
| C5B |
HC5A |
1.080 |
1.079 |
| C6A |
HC6 |
1.080 |
1.079 |
| C6B |
HC6A |
1.080 |
1.080 |
| CBA |
HCB |
1.100 |
1.090 |
| CBB |
HCBA |
1.099 |
1.090 |
| CBB |
HCBB |
1.100 |
1.090 |
Bond Angles for X89
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CBA |
O |
CBB |
110.5 |
114.0 |
| O |
CBA |
C1 |
110.9 |
109.5 |
| O |
CBA |
C1A |
106.1 |
109.5 |
| O |
CBA |
HCB |
111.5 |
109.5 |
| O |
CBB |
C1B |
109.6 |
109.5 |
| O |
CBB |
HCBA |
109.4 |
109.5 |
| O |
CBB |
HCBB |
109.5 |
109.4 |
| N1 |
C1 |
CBA |
113.4 |
109.4 |
| N1 |
C1 |
H1 |
108.2 |
109.4 |
| N1 |
C1 |
H1A |
108.2 |
109.4 |
| CBA |
C1 |
H1 |
108.2 |
109.5 |
| CBA |
C1 |
H1A |
108.2 |
109.5 |
| C1 |
CBA |
C1A |
111.4 |
109.4 |
| C1 |
CBA |
HCB |
106.1 |
109.5 |
| H1 |
C1 |
H1A |
110.7 |
109.5 |
| N3 |
C2 |
H2 |
124.2 |
125.7 |
| N3 |
C4 |
C5 |
110.4 |
108.0 |
| N3 |
C4 |
H4 |
124.8 |
126.0 |
| C5 |
C4 |
H4 |
124.8 |
126.0 |
| C4 |
C5 |
H5 |
126.8 |
126.6 |
| C1A |
C2A |
C3A |
123.5 |
120.0 |
| C6B |
C1B |
CBB |
121.7 |
120.0 |
| C2B |
C1B |
CBB |
117.5 |
120.0 |
| C1B |
CBB |
HCBA |
109.4 |
109.5 |
| C1B |
CBB |
HCBB |
109.4 |
109.5 |
| C2A |
C3A |
HC3 |
122.0 |
120.0 |
| C4A |
C3A |
HC3 |
122.0 |
120.1 |
| C4B |
C3B |
HC3A |
119.9 |
120.0 |
| C6A |
C5A |
HC5 |
119.5 |
120.0 |
| C6B |
C5B |
HC5A |
121.0 |
120.0 |
| C5B |
C6B |
HC6A |
119.8 |
120.0 |
| HCBA |
CBB |
HCBB |
109.5 |
109.4 |
Torsion Angles for X89
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CBA |
O |
CBB |
C1B |
192.5 |
180.0 |
| CBA |
O |
CBB |
HCBA |
312.5 |
300.0 |
| CBA |
O |
CBB |
HCBB |
72.5 |
60.0 |
| N1 |
C1 |
CBA |
O |
82.8 |
295.0 |
| O |
CBA |
C1 |
H1 |
322.8 |
175.1 |
| O |
CBA |
C1 |
H1A |
202.8 |
55.0 |
| C1 |
CBA |
O |
C1A |
238.8 |
240.0 |
| C1 |
CBA |
O |
HCB |
117.9 |
120.0 |
| CBB |
O |
CBA |
C1 |
167.6 |
90.0 |
| CBB |
O |
CBA |
C1A |
288.8 |
210.0 |
| CBB |
O |
CBA |
HCB |
49.7 |
330.0 |
| C6B |
C1B |
CBB |
O |
343.9 |
359.8 |
| C2B |
C1B |
CBB |
O |
161.1 |
180.0 |
| C1B |
CBB |
O |
HCBA |
240.0 |
240.0 |
| C1B |
CBB |
O |
HCBB |
120.0 |
120.0 |
| HCBA |
CBB |
O |
HCBB |
240.0 |
240.1 |
| O |
CBA |
C1 |
N1 |
82.8 |
295.0 |
| CBA |
C1 |
N1 |
H1 |
240.0 |
240.0 |
| CBA |
C1 |
N1 |
H1A |
120.0 |
120.0 |
| N1 |
C1 |
CBA |
C1A |
324.9 |
175.0 |
| N1 |
C1 |
CBA |
HCB |
204.0 |
55.1 |
| H1 |
C1 |
N1 |
H1A |
240.0 |
240.0 |
| C1 |
CBA |
O |
CBB |
167.6 |
90.0 |
| O |
CBA |
C1 |
C1A |
118.0 |
120.0 |
| O |
CBA |
C1 |
HCB |
238.8 |
239.9 |
| N1 |
C1 |
CBA |
H1 |
120.0 |
119.9 |
| N1 |
C1 |
CBA |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
CBA |
H1A |
120.0 |
120.1 |
| N1 |
C1 |
H1 |
CBA |
236.8 |
240.1 |
| N1 |
C1 |
H1 |
H1A |
118.4 |
120.0 |
| CBA |
C1 |
H1 |
H1A |
241.6 |
239.9 |
| H1 |
C1 |
CBA |
C1A |
204.9 |
55.1 |
| H1 |
C1 |
CBA |
HCB |
84.0 |
295.1 |
| N1 |
C1 |
H1A |
CBA |
123.2 |
119.9 |
| N1 |
C1 |
H1A |
H1 |
241.6 |
240.0 |
| CBA |
C1 |
H1A |
H1 |
118.4 |
120.1 |
| H1A |
C1 |
CBA |
C1A |
84.9 |
294.9 |
| H1A |
C1 |
CBA |
HCB |
324.0 |
175.0 |
| C2 |
N1 |
C1 |
CBA |
273.4 |
90.0 |
| C2 |
N1 |
C1 |
H1 |
33.5 |
210.0 |
| C2 |
N1 |
C1 |
H1A |
153.4 |
330.0 |
| C5 |
N1 |
C1 |
CBA |
91.4 |
269.7 |
| C5 |
N1 |
C1 |
H1 |
211.4 |
29.7 |
| C5 |
N1 |
C1 |
H1A |
331.4 |
149.7 |
| C4 |
N3 |
C2 |
H2 |
179.4 |
180.0 |
| C5 |
C4 |
N3 |
H4 |
180.0 |
179.8 |
| N3 |
C4 |
C5 |
H5 |
179.9 |
180.1 |
| N3 |
C4 |
C5 |
H4 |
180.0 |
180.2 |
| N3 |
C4 |
H4 |
C5 |
180.0 |
179.7 |
| H4 |
C4 |
C5 |
H5 |
360.0 |
359.8 |
| H5 |
C5 |
C4 |
H4 |
360.0 |
359.8 |
| C1A |
CBA |
O |
CBB |
288.8 |
210.0 |
| O |
CBA |
C1A |
C1 |
239.2 |
240.0 |
| O |
CBA |
C1A |
HCB |
121.2 |
120.1 |
| C1A |
CBA |
C1 |
H1 |
204.9 |
55.1 |
| C1A |
CBA |
C1 |
H1A |
84.9 |
294.9 |
| C1 |
CBA |
C1A |
HCB |
242.0 |
240.1 |
| O |
CBA |
C1A |
C6A |
334.2 |
334.7 |
| C1 |
CBA |
C1A |
C6A |
95.0 |
94.8 |
| O |
CBA |
C1A |
C2A |
154.9 |
155.0 |
| C1 |
CBA |
C1A |
C2A |
275.8 |
275.0 |
| C1A |
C2A |
C3A |
HC3 |
179.9 |
179.9 |
| O |
CBB |
C1B |
C6B |
343.9 |
359.8 |
| C2B |
C1B |
C6B |
CBB |
182.9 |
179.7 |
| C6B |
C1B |
CBB |
HCBA |
223.9 |
239.7 |
| C6B |
C1B |
CBB |
HCBB |
103.9 |
119.7 |
| O |
CBB |
C1B |
HCBA |
120.0 |
120.0 |
| O |
CBB |
C1B |
HCBB |
240.0 |
240.0 |
| HCBA |
CBB |
C1B |
HCBB |
120.0 |
120.0 |
| O |
CBB |
C1B |
C2B |
161.1 |
180.0 |
| C6B |
C1B |
C2B |
CBB |
177.2 |
180.3 |
| C2B |
C1B |
CBB |
HCBA |
41.1 |
60.0 |
| C2B |
C1B |
CBB |
HCBB |
281.1 |
300.0 |
| C4A |
C3A |
C2A |
HC3 |
180.0 |
180.1 |
| C3B |
C2B |
C1B |
CBB |
181.3 |
180.0 |
| C2A |
C3A |
C4A |
HC3 |
180.0 |
179.9 |
| C5A |
C4A |
C3A |
HC3 |
179.7 |
180.1 |
| C5B |
C4B |
C3B |
HC3A |
180.7 |
180.1 |
| C5B |
C6B |
C1B |
CBB |
180.1 |
179.8 |
| HC5A |
C5B |
C6B |
HC6A |
357.5 |
359.9 |
| HC6 |
C6A |
C5A |
HC5 |
359.6 |
0.1 |
| HC6A |
C6B |
C1B |
CBB |
0.1 |
0.2 |
| HC6A |
C6B |
C5B |
HC5A |
357.5 |
359.9 |
| HCB |
CBA |
O |
CBB |
49.7 |
330.0 |
| O |
CBA |
HCB |
C1 |
120.8 |
120.1 |
| O |
CBA |
HCB |
C1A |
242.0 |
240.0 |
| HCB |
CBA |
C1 |
H1 |
84.0 |
295.1 |
| HCB |
CBA |
C1 |
H1A |
324.0 |
175.0 |
| C1 |
CBA |
HCB |
C1A |
121.2 |
119.9 |
| O |
CBB |
HCBA |
C1B |
239.9 |
240.0 |
| O |
CBB |
HCBA |
HCBB |
120.0 |
120.0 |
| C1B |
CBB |
HCBA |
HCBB |
240.1 |
240.0 |
| O |
CBB |
HCBB |
C1B |
120.1 |
120.0 |
| O |
CBB |
HCBB |
HCBA |
240.0 |
240.0 |
| C1B |
CBB |
HCBB |
HCBA |
119.9 |
120.0 |