PDB Chemical Component X87

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X87

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C09 1.310 1.388
N01 C14 1.495 1.465
N01 HN01 1.000 0.970
N02 C13 1.371 1.348
N02 HN02 1.000 0.970
N02 HN0A 1.000 0.969
N03 C16 1.378 1.318
N03 C17 1.383 1.319
N04 C11 1.295 1.390
N04 C20 1.485 1.465
N04 HN04 1.000 0.970
N05 C22 1.441 1.469
N05 HN05 1.000 1.009
N05 HN0B 1.000 1.009
N06 C12 1.285 1.480
N06 O24 1.319 1.217
N06 O25 1.319 1.218
C07 C08 1.434 1.398
C07 C12 1.434 1.365
C07 H07 1.080 1.080
C08 C09 1.440 1.406
C08 C13 1.391 1.472
C09 C10 1.438 1.386
C10 C11 1.420 1.389
C10 H10 1.080 1.081
C11 C12 1.439 1.394
C13 O23 1.211 1.217
C14 C15 1.516 1.507
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C15 C16 1.409 1.382
C15 C19 1.421 1.386
C16 H16 1.080 1.081
C17 C18 1.407 1.382
C17 H17 1.080 1.080
C18 C19 1.418 1.387
C18 H18 1.080 1.080
C19 H19 1.080 1.080
C20 C21 1.525 1.530
C20 H20 1.100 1.090
C20 H20A 1.100 1.090
C21 C22 1.526 1.530
C21 H21 1.100 1.091
C21 H21A 1.101 1.090
C22 H22 1.100 1.089
C22 H22A 1.100 1.090

Bond Angles for X87

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C09 N01 C14 124.2 120.0
C09 N01 HN01 104.8 120.0
N01 C09 C08 120.2 120.2
N01 C09 C10 120.8 120.2
C14 N01 HN01 104.8 120.0
N01 C14 C15 111.3 109.5
N01 C14 H14 108.8 109.5
N01 C14 H14A 108.9 109.5
C13 N02 HN02 120.0 119.9
C13 N02 HN0A 120.0 120.0
N02 C13 C08 120.3 120.0
N02 C13 O23 118.6 120.0
HN02 N02 HN0A 120.0 120.1
C16 N03 C17 117.7 121.7
N03 C16 C15 123.2 120.8
N03 C16 H16 118.4 119.6
N03 C17 C18 123.2 120.7
N03 C17 H17 118.4 119.7
C11 N04 C20 122.3 120.0
C11 N04 HN04 105.4 120.0
N04 C11 C10 119.9 119.9
N04 C11 C12 120.7 119.9
C20 N04 HN04 105.4 120.0
N04 C20 C21 109.6 109.5
N04 C20 H20 109.4 109.5
N04 C20 H20A 109.4 109.5
C22 N05 HN05 109.5 111.0
C22 N05 HN0B 109.5 111.0
N05 C22 C21 109.8 109.4
N05 C22 H22 109.4 109.5
N05 C22 H22A 109.4 109.5
HN05 N05 HN0B 109.5 111.0
C12 N06 O24 121.1 120.0
C12 N06 O25 120.3 120.0
N06 C12 C07 119.4 119.8
N06 C12 C11 121.4 119.8
O24 N06 O25 118.6 120.0
C08 C07 C12 121.5 120.1
C08 C07 H07 119.3 120.0
C07 C08 C09 119.1 119.8
C07 C08 C13 119.0 120.1
C12 C07 H07 119.3 119.9
C07 C12 C11 119.2 120.4
C09 C08 C13 121.8 120.1
C08 C09 C10 119.0 119.6
C08 C13 O23 121.1 120.0
C09 C10 C11 121.8 119.9
C09 C10 H10 119.1 120.0
C11 C10 H10 119.1 120.1
C10 C11 C12 119.4 120.2
C15 C14 H14 108.9 109.5
C15 C14 H14A 108.9 109.5
C14 C15 C16 120.5 120.5
C14 C15 C19 121.7 120.4
H14 C14 H14A 110.1 109.5
C16 C15 C19 117.8 119.1
C15 C16 H16 118.4 119.6
C15 C19 C18 120.3 118.4
C15 C19 H19 119.9 120.8
C18 C17 H17 118.4 119.6
C17 C18 C19 117.9 119.2
C17 C18 H18 121.1 120.5
C19 C18 H18 121.0 120.4
C18 C19 H19 119.9 120.8
C21 C20 H20 109.4 109.4
C21 C20 H20A 109.5 109.5
C20 C21 C22 109.4 109.5
C20 C21 H21 109.5 109.4
C20 C21 H21A 109.5 109.5
H20 C20 H20A 109.5 109.5
C22 C21 H21 109.5 109.5
C22 C21 H21A 109.5 109.5
C21 C22 H22 109.4 109.4
C21 C22 H22A 109.4 109.5
H21 C21 H21A 109.5 109.5
H22 C22 H22A 109.5 109.5

Torsion Angles for X87

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C14 N01 C09 HN01 240.0 180.2
C09 N01 C14 C15 84.1 180.0
C09 N01 C14 H14 204.1 300.0
C09 N01 C14 H14A 324.1 60.0
C07 C08 C09 N01 179.8 180.0
N01 C09 C08 C13 359.7 360.0
C08 C09 N01 C10 180.0 180.0
N01 C09 C10 C11 180.1 180.1
N01 C09 C10 H10 0.2 360.0
C09 N01 C14 HN01 120.0 179.8
C14 N01 C09 C08 172.6 173.4
C14 N01 C09 C10 352.6 353.4
C15 C14 N01 H14 240.0 240.0
C15 C14 N01 H14A 120.0 120.0
N01 C14 C15 C16 227.5 90.0
N01 C14 C15 C19 47.3 270.0
H14 C14 N01 H14A 240.0 240.0
C09 N01 HN01 C14 227.8 180.2
HN01 N01 C09 C08 292.6 353.2
HN01 N01 C09 C10 112.6 173.2
HN01 N01 C14 C15 324.1 0.3
HN01 N01 C14 H14 84.1 120.2
HN01 N01 C14 H14A 204.1 240.2
HN02 N02 C13 HN0A 180.0 180.1
C07 C08 C13 N02 30.7 353.8
C09 C08 C13 N02 210.8 173.8
C08 C13 N02 O23 179.1 180.1
C13 N02 HN02 HN0A 180.0 179.9
HN02 N02 C13 C08 179.1 0.1
HN02 N02 C13 O23 0.0 180.0
C13 N02 HN0A HN02 180.0 180.1
HN0A N02 C13 C08 359.1 180.0
HN0A N02 C13 O23 180.0 359.9
C16 N03 C17 C18 0.0 0.0
C16 N03 C17 H17 180.0 179.9
C14 C15 C16 N03 179.9 180.0
N03 C16 C15 C19 0.1 360.0
C15 C16 N03 H16 180.0 180.0
C17 N03 C16 C15 359.9 360.0
C17 N03 C16 H16 179.9 180.0
C18 C17 N03 H17 180.0 180.1
N03 C17 C18 C19 0.1 0.0
N03 C17 C18 H18 180.1 180.0
C20 N04 C11 HN04 240.0 179.9
C11 N04 C20 C21 212.5 180.1
C11 N04 C20 H20 332.5 300.0
C11 N04 C20 H20A 92.5 60.1
N06 C12 C11 N04 0.1 0.0
C07 C12 C11 N04 180.1 180.0
C09 C10 C11 N04 179.8 180.0
N04 C11 C10 H10 359.8 0.1
C10 C11 N04 C12 180.1 180.0
C11 N04 C20 HN04 120.0 180.1
C20 N04 C11 C10 39.5 5.8
C20 N04 C11 C12 219.4 185.8
C21 C20 N04 H20 240.0 240.0
C21 C20 N04 H20A 120.0 120.0
N04 C20 C21 C22 263.0 180.0
N04 C20 C21 H21 23.0 300.0
N04 C20 C21 H21A 143.0 60.0
H20 C20 N04 H20A 240.0 240.0
C11 N04 HN04 C20 229.4 179.9
HN04 N04 C11 C10 159.6 185.9
HN04 N04 C11 C12 339.5 5.9
HN04 N04 C20 C21 92.5 0.0
HN04 N04 C20 H20 212.5 120.0
HN04 N04 C20 H20A 332.5 240.0
HN05 N05 C22 HN0B 240.0 236.1
C20 C21 C22 N05 170.3 180.0
N05 C22 C21 H21 50.3 60.0
N05 C22 C21 H21A 290.3 300.0
C21 C22 N05 H22 240.0 240.1
C21 C22 N05 H22A 120.0 120.0
H22 C22 N05 H22A 240.0 239.9
C22 N05 HN05 HN0B 120.0 123.9
HN05 N05 C22 C21 180.0 56.1
HN05 N05 C22 H22 300.0 176.0
HN05 N05 C22 H22A 60.0 296.1
C22 N05 HN0B HN05 240.0 236.1
HN0B N05 C22 C21 300.0 180.0
HN0B N05 C22 H22 60.0 299.9
HN0B N05 C22 H22A 180.0 60.0
N04 C11 C12 N06 0.1 0.0
O24 N06 C12 O25 180.4 180.1
C08 C07 C12 N06 180.0 180.0
N06 C12 C07 H07 0.0 0.3
C07 C12 N06 C11 180.0 180.0
C10 C11 C12 N06 180.0 180.1
C12 N06 O24 O25 179.6 179.9
O24 N06 C12 C07 210.4 37.5
O24 N06 C12 C11 30.4 217.5
C12 N06 O25 O24 180.4 180.1
O25 N06 C12 C07 30.0 217.4
O25 N06 C12 C11 210.0 37.4
N01 C09 C08 C07 179.8 180.0
N02 C13 C08 C07 30.7 353.8
N06 C12 C07 C08 180.0 180.0
C12 C07 C08 H07 180.0 180.3
C08 C07 C12 C11 360.0 360.0
C09 C08 C07 C13 179.9 180.0
C07 C08 C09 C10 359.8 360.0
C07 C08 C13 O23 209.8 173.9
N04 C11 C12 C07 180.1 180.0
C07 C12 N06 O24 210.4 37.5
C07 C12 N06 O25 30.0 217.4
N06 C12 C07 C11 180.0 180.0
C08 C07 C12 H07 180.0 179.7
C12 C07 C08 C09 0.1 0.0
C12 C07 C08 C13 180.2 180.0
C10 C11 C12 C07 360.0 0.0
C08 C07 H07 C12 180.0 180.3
H07 C07 C08 C09 180.1 179.7
H07 C07 C08 C13 0.2 359.7
H07 C07 C12 C11 180.0 180.3
C08 C09 N01 C14 172.6 173.4
C08 C09 N01 HN01 292.6 353.2
N01 C09 C08 C10 180.0 180.0
N02 C13 C08 C09 210.8 173.8
C09 C08 C07 C12 0.1 0.0
C09 C08 C07 H07 180.1 179.7
C07 C08 C09 C13 180.1 180.0
C09 C08 C13 O23 29.9 353.9
C08 C09 C10 C11 0.2 0.0
C08 C09 C10 H10 180.2 179.9
C08 C13 N02 HN02 179.1 0.1
C08 C13 N02 HN0A 359.1 180.0
N02 C13 C08 O23 180.9 179.9
C13 C08 C07 C12 180.2 180.0
C13 C08 C07 H07 0.2 359.7
C07 C08 C13 C09 179.9 180.0
C13 C08 C09 C10 179.7 180.0
C10 C09 N01 C14 352.6 353.4
C10 C09 N01 HN01 112.6 173.2
N01 C09 C10 C08 180.0 180.0
N04 C11 C10 C09 179.8 180.0
C10 C09 C08 C13 179.7 180.0
C11 C10 C09 H10 180.0 180.1
C09 C10 C11 C12 359.9 360.0
C10 C11 N04 C20 39.5 5.8
C10 C11 N04 HN04 159.6 185.9
N04 C11 C10 C12 179.9 180.0
N06 C12 C11 C10 180.0 180.1
C07 C12 C11 C10 360.0 0.0
C09 C10 C11 H10 180.0 179.9
C09 C10 H10 C11 180.0 180.1
H10 C10 C11 C12 179.9 180.1
C12 C11 N04 C20 219.4 185.8
C12 C11 N04 HN04 339.5 5.9
N04 C11 C12 C10 180.1 180.0
C11 C12 N06 O24 30.4 217.5
C11 C12 N06 O25 210.0 37.4
N06 C12 C11 C07 180.0 180.0
C11 C12 C07 H07 180.0 180.3
C12 C11 C10 H10 179.9 180.1
O23 C13 N02 HN02 0.0 180.0
O23 C13 N02 HN0A 180.0 359.9
N02 C13 O23 C08 179.1 180.1
C15 C14 N01 HN01 324.1 0.3
N01 C14 C15 H14 120.0 120.0
N01 C14 C15 H14A 240.0 240.0
N03 C16 C15 C14 179.9 180.0
H14 C14 C15 H14A 120.0 120.0
C16 C15 C14 C19 180.2 180.0
C14 C15 C16 H16 359.9 360.0
C14 C15 C19 C18 180.2 180.0
C14 C15 C19 H19 0.2 360.0
H14 C14 N01 HN01 84.1 120.2
N01 C14 H14 C15 238.5 240.0
N01 C14 H14 H14A 119.2 120.0
C15 C14 H14 H14A 240.7 240.0
H14 C14 C15 C16 107.5 330.0
H14 C14 C15 C19 287.3 150.0
H14A C14 N01 HN01 204.1 240.2
N01 C14 H14A C15 121.5 120.0
N01 C14 H14A H14 240.8 240.0
C15 C14 H14A H14 119.3 120.0
H14A C14 C15 C16 347.5 210.0
H14A C14 C15 C19 167.3 30.0
C15 C16 N03 C17 359.9 360.0
N03 C16 C15 H16 180.0 180.0
C16 C15 C14 H14 107.5 330.0
C16 C15 C14 H14A 347.5 210.0
C14 C15 C16 C19 179.8 180.0
C16 C15 C19 C18 0.0 0.0
C16 C15 C19 H19 180.0 179.9
C19 C15 C14 H14 287.3 150.0
C19 C15 C14 H14A 167.3 30.0
C14 C15 C19 C16 180.2 180.0
C19 C15 C16 H16 180.0 180.0
C17 C18 C19 C15 359.9 360.0
C15 C19 C18 H18 179.9 180.0
C18 C19 C15 H19 180.0 180.1
H16 C16 N03 C17 179.9 180.0
N03 C16 H16 C15 180.0 180.0
H16 C16 C15 C19 180.0 180.0
N03 C17 C18 H17 180.0 179.9
C15 C19 C18 C17 359.9 360.0
C19 C18 C17 H18 180.0 180.0
C17 C18 C19 H19 179.9 180.1
N03 C17 H17 C18 180.0 180.1
H17 C17 C18 C19 180.1 180.1
H17 C17 C18 H18 0.1 0.0
C15 C19 C18 H19 180.0 179.9
C19 C18 C17 H17 180.1 180.1
C17 C18 C19 H18 180.0 180.0
H18 C18 C17 H17 0.1 0.0
C17 C18 H18 C19 180.0 180.0
H18 C18 C19 H19 359.9 0.1
C15 C19 H19 C18 180.0 180.1
H19 C19 C18 H18 359.9 0.1
C21 C20 N04 HN04 92.5 0.0
N04 C20 C21 H20 120.0 120.0
N04 C20 C21 H20A 240.0 240.0
N05 C22 C21 C20 170.3 180.0
H20 C20 C21 H20A 120.1 120.0
C22 C21 C20 H21 240.0 240.0
C22 C21 C20 H21A 120.0 120.0
C20 C21 C22 H22 50.3 60.0
C20 C21 C22 H22A 290.3 300.0
H21 C21 C20 H21A 240.0 240.0
H20 C20 N04 HN04 212.5 120.0
N04 C20 H20 C21 240.0 240.0
N04 C20 H20 H20A 119.9 120.0
C21 C20 H20 H20A 240.0 240.0
H20 C20 C21 C22 143.0 60.0
H20 C20 C21 H21 263.0 180.0
H20 C20 C21 H21A 23.1 300.0
H20A C20 N04 HN04 332.5 240.0
N04 C20 H20A C21 120.1 120.0
N04 C20 H20A H20 240.0 239.9
C21 C20 H20A H20 120.0 120.0
H20A C20 C21 C22 23.0 300.0
H20A C20 C21 H21 143.0 60.0
H20A C20 C21 H21A 263.0 180.0
C21 C22 N05 HN05 180.0 56.1
C21 C22 N05 HN0B 300.0 180.0
N05 C22 C21 H22 120.0 120.0
N05 C22 C21 H22A 240.0 240.0
C22 C21 C20 H20 143.0 60.0
C22 C21 C20 H20A 23.0 300.0
C20 C21 C22 H21 120.0 119.9
C20 C21 C22 H21A 240.0 240.0
H21 C21 C22 H21A 120.0 120.1
H22 C22 C21 H22A 120.0 120.0
H21 C21 C20 H20 263.0 180.0
H21 C21 C20 H20A 143.0 60.0
C20 C21 H21 C22 240.1 240.0
C20 C21 H21 H21A 120.1 120.0
C22 C21 H21 H21A 240.0 240.0
H21 C21 C22 H22 290.3 300.0
H21 C21 C22 H22A 170.3 180.0
H21A C21 C20 H20 23.1 300.0
H21A C21 C20 H20A 263.0 180.0
C20 C21 H21A C22 119.9 120.0
C20 C21 H21A H21 239.9 240.0
C22 C21 H21A H21 120.0 120.0
H21A C21 C22 H22 170.3 180.0
H21A C21 C22 H22A 50.3 60.0
H22 C22 N05 HN05 300.0 176.0
H22 C22 N05 HN0B 60.0 299.9
N05 C22 H22 C21 239.8 240.0
N05 C22 H22 H22A 119.9 120.1
H22 C22 C21 H21 290.3 300.0
H22 C22 C21 H21A 170.3 180.0
C21 C22 H22 H22A 240.1 240.0
H22A C22 N05 HN05 60.0 296.1
H22A C22 N05 HN0B 180.0 60.0
N05 C22 H22A C21 120.2 120.0
N05 C22 H22A H22 240.1 239.9
H22A C22 C21 H21 170.3 180.0
H22A C22 C21 H21A 50.3 60.0
C21 C22 H22A H22 119.9 120.0