PDB Chemical Component X86
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X86
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C08 |
1.311 |
1.389 |
| N01 |
C13 |
1.504 |
1.465 |
| N01 |
HN01 |
1.000 |
0.971 |
| N02 |
C12 |
1.371 |
1.347 |
| N02 |
H102 |
1.000 |
0.971 |
| N02 |
H202 |
1.000 |
0.969 |
| N03 |
C16 |
1.369 |
1.319 |
| N04 |
C19 |
1.490 |
1.465 |
| N04 |
HN04 |
1.000 |
0.970 |
| N05 |
O24 |
1.306 |
1.218 |
| C06 |
C11 |
1.439 |
1.365 |
| C06 |
H06 |
1.080 |
1.079 |
| C07 |
C06 |
1.432 |
1.399 |
| C07 |
C08 |
1.432 |
1.406 |
| C08 |
C09 |
1.447 |
1.386 |
| C09 |
C10 |
1.422 |
1.388 |
| C09 |
H09 |
1.080 |
1.079 |
| C10 |
N04 |
1.302 |
1.391 |
| C11 |
N05 |
1.288 |
1.480 |
| C11 |
C10 |
1.426 |
1.393 |
| C12 |
C07 |
1.386 |
1.471 |
| C13 |
C14 |
1.522 |
1.506 |
| C13 |
H113 |
1.100 |
1.090 |
| C13 |
H213 |
1.100 |
1.090 |
| C14 |
C18 |
1.413 |
1.387 |
| C15 |
C14 |
1.415 |
1.382 |
| C15 |
N03 |
1.371 |
1.318 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
C17 |
1.405 |
1.382 |
| C16 |
H16 |
1.080 |
1.081 |
| C17 |
H17 |
1.080 |
1.079 |
| C18 |
C17 |
1.406 |
1.387 |
| C18 |
H18 |
1.081 |
1.079 |
| C19 |
C20 |
1.526 |
1.530 |
| C19 |
H119 |
1.100 |
1.090 |
| C19 |
H219 |
1.101 |
1.089 |
| C20 |
C21 |
1.525 |
1.530 |
| C20 |
H120 |
1.100 |
1.091 |
| C20 |
H220 |
1.100 |
1.091 |
| C21 |
H121 |
1.100 |
1.089 |
| C21 |
H221 |
1.100 |
1.090 |
| C22 |
H122 |
1.100 |
1.090 |
| C22 |
H222 |
1.099 |
1.090 |
| C22 |
H322 |
1.100 |
1.090 |
| O23 |
C12 |
1.223 |
1.216 |
| O25 |
N05 |
1.317 |
1.218 |
| O26 |
C22 |
1.397 |
1.428 |
| O26 |
C21 |
1.398 |
1.429 |
Bond Angles for X86
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
N01 |
C13 |
124.7 |
120.0 |
| C08 |
N01 |
HN01 |
104.6 |
120.0 |
| N01 |
C08 |
C07 |
120.1 |
120.2 |
| N01 |
C08 |
C09 |
121.1 |
120.2 |
| C13 |
N01 |
HN01 |
104.7 |
120.0 |
| N01 |
C13 |
C14 |
112.4 |
109.5 |
| N01 |
C13 |
H113 |
108.5 |
109.4 |
| N01 |
C13 |
H213 |
108.5 |
109.4 |
| C12 |
N02 |
H102 |
120.0 |
120.0 |
| C12 |
N02 |
H202 |
120.0 |
120.1 |
| N02 |
C12 |
C07 |
119.8 |
120.0 |
| H102 |
N02 |
H202 |
120.0 |
119.9 |
| C15 |
N03 |
C16 |
118.0 |
121.7 |
| N03 |
C16 |
C17 |
123.4 |
120.8 |
| N03 |
C16 |
H16 |
118.3 |
119.6 |
| C19 |
N04 |
HN04 |
105.1 |
120.0 |
| C10 |
N04 |
C19 |
123.4 |
120.0 |
| N04 |
C19 |
C20 |
109.1 |
109.5 |
| N04 |
C19 |
H119 |
109.6 |
109.4 |
| N04 |
C19 |
H219 |
109.6 |
109.5 |
| C10 |
N04 |
HN04 |
105.0 |
120.0 |
| C11 |
N05 |
O24 |
121.8 |
120.0 |
| C11 |
C06 |
H06 |
119.1 |
120.0 |
| C07 |
C06 |
C11 |
121.9 |
120.1 |
| C06 |
C11 |
C10 |
119.2 |
120.4 |
| C07 |
C06 |
H06 |
119.0 |
119.9 |
| C07 |
C08 |
C09 |
118.8 |
119.6 |
| C08 |
C09 |
C10 |
122.1 |
119.8 |
| C08 |
C09 |
H09 |
119.0 |
120.0 |
| C10 |
C09 |
H09 |
119.0 |
120.1 |
| C14 |
C13 |
H113 |
108.5 |
109.5 |
| C14 |
C13 |
H213 |
108.5 |
109.5 |
| C13 |
C14 |
C18 |
120.3 |
120.4 |
| H113 |
C13 |
H213 |
110.4 |
109.5 |
| C15 |
C14 |
C18 |
117.7 |
119.1 |
| C14 |
C18 |
C17 |
120.6 |
118.4 |
| C14 |
C18 |
H18 |
119.7 |
120.8 |
| C17 |
C16 |
H16 |
118.3 |
119.6 |
| C16 |
C17 |
H17 |
121.2 |
120.5 |
| C18 |
C17 |
H17 |
121.2 |
120.4 |
| C20 |
C19 |
H119 |
109.6 |
109.4 |
| C20 |
C19 |
H219 |
109.6 |
109.5 |
| C19 |
C20 |
C21 |
109.1 |
109.5 |
| C19 |
C20 |
H120 |
109.6 |
109.5 |
| C19 |
C20 |
H220 |
109.6 |
109.5 |
| H119 |
C19 |
H219 |
109.4 |
109.5 |
| C21 |
C20 |
H120 |
109.6 |
109.5 |
| C21 |
C20 |
H220 |
109.6 |
109.5 |
| C20 |
C21 |
H121 |
109.6 |
109.5 |
| C20 |
C21 |
H221 |
109.7 |
109.4 |
| H120 |
C20 |
H220 |
109.3 |
109.4 |
| H121 |
C21 |
H221 |
109.3 |
109.5 |
| O26 |
C21 |
H121 |
109.7 |
109.5 |
| O26 |
C21 |
H221 |
109.6 |
109.4 |
| H122 |
C22 |
H222 |
109.5 |
109.5 |
| H122 |
C22 |
H322 |
109.5 |
109.4 |
| O26 |
C22 |
H122 |
109.5 |
109.5 |
| H222 |
C22 |
H322 |
109.5 |
109.4 |
| O26 |
C22 |
H222 |
109.5 |
109.5 |
| O26 |
C22 |
H322 |
109.5 |
109.5 |
Torsion Angles for X86
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
N01 |
C08 |
HN01 |
240.0 |
180.2 |
| C08 |
N01 |
C13 |
C14 |
74.9 |
180.0 |
| C08 |
N01 |
C13 |
H113 |
194.9 |
300.1 |
| C08 |
N01 |
C13 |
H213 |
314.9 |
60.0 |
| C07 |
C08 |
N01 |
C09 |
179.8 |
180.1 |
| N01 |
C08 |
C09 |
C10 |
180.2 |
180.1 |
| N01 |
C08 |
C09 |
H09 |
0.2 |
0.0 |
| C08 |
N01 |
C13 |
HN01 |
120.0 |
179.8 |
| C13 |
N01 |
C08 |
C07 |
180.0 |
173.4 |
| C13 |
N01 |
C08 |
C09 |
0.2 |
353.3 |
| C14 |
C13 |
N01 |
H113 |
240.0 |
240.0 |
| C14 |
C13 |
N01 |
H213 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
C18 |
232.8 |
90.0 |
| H113 |
C13 |
N01 |
H213 |
240.0 |
240.0 |
| C08 |
N01 |
HN01 |
C13 |
227.4 |
180.2 |
| HN01 |
N01 |
C08 |
C07 |
300.0 |
353.2 |
| HN01 |
N01 |
C08 |
C09 |
120.2 |
173.1 |
| HN01 |
N01 |
C13 |
C14 |
314.9 |
0.2 |
| HN01 |
N01 |
C13 |
H113 |
74.9 |
120.2 |
| HN01 |
N01 |
C13 |
H213 |
194.9 |
240.2 |
| H102 |
N02 |
C12 |
H202 |
180.0 |
179.9 |
| C12 |
N02 |
H102 |
H202 |
180.0 |
180.0 |
| H102 |
N02 |
C12 |
C07 |
178.4 |
360.0 |
| C12 |
N02 |
H202 |
H102 |
180.0 |
179.9 |
| H202 |
N02 |
C12 |
C07 |
358.4 |
180.0 |
| C17 |
C16 |
N03 |
H16 |
180.0 |
180.1 |
| N03 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
| C10 |
N04 |
C19 |
HN04 |
240.0 |
179.9 |
| C20 |
C19 |
N04 |
H119 |
240.0 |
240.1 |
| C20 |
C19 |
N04 |
H219 |
120.0 |
120.0 |
| N04 |
C19 |
C20 |
C21 |
77.8 |
180.0 |
| N04 |
C19 |
C20 |
H120 |
197.8 |
300.0 |
| N04 |
C19 |
C20 |
H220 |
317.8 |
59.9 |
| H119 |
C19 |
N04 |
H219 |
240.0 |
240.0 |
| C10 |
N04 |
HN04 |
C19 |
131.5 |
180.1 |
| HN04 |
N04 |
C19 |
C20 |
288.4 |
0.1 |
| HN04 |
N04 |
C19 |
H119 |
48.4 |
120.0 |
| HN04 |
N04 |
C19 |
H219 |
168.4 |
240.0 |
| C06 |
C11 |
N05 |
O24 |
177.6 |
37.3 |
| C07 |
C06 |
C11 |
H06 |
180.0 |
179.6 |
| C07 |
C06 |
H06 |
C11 |
180.0 |
180.4 |
| H06 |
C06 |
C11 |
C10 |
180.3 |
180.3 |
| N01 |
C08 |
C07 |
C06 |
179.6 |
180.0 |
| N02 |
C12 |
C07 |
C06 |
25.9 |
353.9 |
| C11 |
C06 |
C07 |
H06 |
180.0 |
180.4 |
| C07 |
C06 |
C11 |
C10 |
0.3 |
359.9 |
| C07 |
C08 |
N01 |
C13 |
180.0 |
173.4 |
| C07 |
C08 |
N01 |
HN01 |
300.0 |
353.2 |
| N01 |
C08 |
C07 |
C09 |
180.2 |
179.9 |
| N02 |
C12 |
C07 |
C08 |
206.2 |
173.9 |
| C08 |
C07 |
C06 |
C11 |
0.3 |
360.0 |
| C08 |
C07 |
C06 |
H06 |
180.3 |
179.6 |
| C07 |
C08 |
C09 |
C10 |
0.4 |
360.0 |
| C07 |
C08 |
C09 |
H09 |
180.4 |
179.9 |
| C09 |
C08 |
N01 |
C13 |
0.2 |
353.3 |
| C09 |
C08 |
N01 |
HN01 |
120.2 |
173.1 |
| N01 |
C08 |
C09 |
C07 |
179.8 |
180.1 |
| C10 |
C09 |
C08 |
H09 |
180.0 |
180.0 |
| C09 |
C10 |
N04 |
C19 |
357.1 |
5.9 |
| C09 |
C10 |
N04 |
HN04 |
237.1 |
185.8 |
| C06 |
C11 |
C10 |
C09 |
359.4 |
0.1 |
| C08 |
C09 |
C10 |
H09 |
180.0 |
180.0 |
| C08 |
C09 |
H09 |
C10 |
180.0 |
180.0 |
| C19 |
N04 |
C10 |
HN04 |
120.0 |
180.1 |
| C10 |
N04 |
C19 |
C20 |
168.4 |
180.0 |
| C10 |
N04 |
C19 |
H119 |
288.4 |
299.9 |
| C10 |
N04 |
C19 |
H219 |
48.4 |
60.0 |
| C11 |
C10 |
N04 |
C19 |
177.0 |
185.9 |
| C11 |
C10 |
N04 |
HN04 |
57.0 |
5.9 |
| C10 |
C11 |
N05 |
O24 |
357.6 |
217.1 |
| C10 |
C11 |
C06 |
H06 |
180.3 |
180.3 |
| C11 |
C10 |
C09 |
H09 |
180.2 |
180.0 |
| C07 |
C12 |
N02 |
H102 |
178.4 |
360.0 |
| C07 |
C12 |
N02 |
H202 |
358.4 |
180.0 |
| C12 |
C07 |
C06 |
H06 |
0.6 |
359.7 |
| C14 |
C13 |
N01 |
HN01 |
314.9 |
0.2 |
| N01 |
C13 |
C14 |
H113 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
H213 |
240.0 |
240.0 |
| H113 |
C13 |
C14 |
H213 |
120.0 |
120.1 |
| C15 |
C14 |
C13 |
C18 |
179.8 |
180.0 |
| C13 |
C14 |
C18 |
C17 |
179.9 |
180.0 |
| C13 |
C14 |
C18 |
H18 |
359.9 |
360.0 |
| H113 |
C13 |
N01 |
HN01 |
74.9 |
120.2 |
| N01 |
C13 |
H113 |
C14 |
237.6 |
240.0 |
| N01 |
C13 |
H113 |
H213 |
118.8 |
119.9 |
| C14 |
C13 |
H113 |
H213 |
241.2 |
239.9 |
| H113 |
C13 |
C14 |
C18 |
112.9 |
330.1 |
| H213 |
C13 |
N01 |
HN01 |
194.9 |
240.2 |
| N01 |
C13 |
H213 |
C14 |
122.4 |
120.0 |
| N01 |
C13 |
H213 |
H113 |
241.2 |
240.1 |
| C14 |
C13 |
H213 |
H113 |
118.8 |
120.1 |
| H213 |
C13 |
C14 |
C18 |
352.8 |
210.0 |
| C18 |
C14 |
C13 |
H113 |
112.9 |
330.1 |
| C18 |
C14 |
C13 |
H213 |
352.8 |
210.0 |
| C14 |
C18 |
C17 |
H17 |
179.8 |
180.0 |
| C14 |
C15 |
N03 |
C16 |
359.9 |
360.0 |
| C15 |
C14 |
C13 |
H113 |
292.6 |
150.1 |
| C15 |
C14 |
C13 |
H213 |
172.6 |
30.0 |
| C13 |
C14 |
C15 |
C18 |
180.2 |
180.0 |
| C15 |
C14 |
C18 |
C17 |
0.2 |
360.0 |
| C15 |
C14 |
C18 |
H18 |
180.1 |
180.0 |
| C15 |
N03 |
C16 |
C17 |
0.1 |
0.1 |
| C15 |
N03 |
C16 |
H16 |
180.1 |
180.0 |
| H15 |
C15 |
N03 |
C16 |
179.9 |
180.0 |
| H15 |
C15 |
C14 |
C18 |
180.0 |
180.0 |
| N03 |
C16 |
C17 |
H16 |
180.0 |
179.9 |
| C14 |
C18 |
C17 |
C16 |
359.9 |
0.1 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
179.9 |
| N03 |
C16 |
H16 |
C17 |
180.0 |
180.1 |
| H16 |
C16 |
C17 |
H17 |
0.0 |
0.1 |
| H17 |
C17 |
C16 |
H16 |
0.0 |
0.1 |
| C14 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H16 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.1 |
| C14 |
C18 |
H18 |
C17 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
359.9 |
0.0 |
| C20 |
C19 |
N04 |
HN04 |
288.4 |
0.1 |
| N04 |
C19 |
C20 |
H119 |
120.0 |
119.9 |
| N04 |
C19 |
C20 |
H219 |
240.0 |
240.0 |
| H119 |
C19 |
C20 |
H219 |
120.0 |
120.0 |
| C21 |
C20 |
C19 |
H120 |
240.0 |
240.0 |
| C21 |
C20 |
C19 |
H220 |
120.0 |
120.0 |
| C19 |
C20 |
C21 |
H121 |
38.6 |
300.0 |
| C19 |
C20 |
C21 |
H221 |
158.6 |
60.0 |
| H120 |
C20 |
C19 |
H220 |
240.0 |
240.1 |
| H119 |
C19 |
N04 |
HN04 |
48.4 |
120.0 |
| N04 |
C19 |
H119 |
C20 |
240.3 |
240.0 |
| N04 |
C19 |
H119 |
H219 |
120.1 |
120.0 |
| C20 |
C19 |
H119 |
H219 |
239.8 |
240.0 |
| H119 |
C19 |
C20 |
C21 |
317.8 |
60.0 |
| H119 |
C19 |
C20 |
H120 |
77.9 |
180.1 |
| H119 |
C19 |
C20 |
H220 |
197.8 |
300.0 |
| H219 |
C19 |
N04 |
HN04 |
168.4 |
240.0 |
| N04 |
C19 |
H219 |
C20 |
119.7 |
120.0 |
| N04 |
C19 |
H219 |
H119 |
239.9 |
240.0 |
| C20 |
C19 |
H219 |
H119 |
120.2 |
120.0 |
| H219 |
C19 |
C20 |
C21 |
197.8 |
300.0 |
| H219 |
C19 |
C20 |
H120 |
317.8 |
60.0 |
| H219 |
C19 |
C20 |
H220 |
77.8 |
180.0 |
| C21 |
C20 |
C19 |
H119 |
317.8 |
60.0 |
| C21 |
C20 |
C19 |
H219 |
197.8 |
300.0 |
| C19 |
C20 |
C21 |
H120 |
120.0 |
120.0 |
| C19 |
C20 |
C21 |
H220 |
240.0 |
240.0 |
| H120 |
C20 |
C21 |
H220 |
120.0 |
120.0 |
| H121 |
C21 |
C20 |
H221 |
240.0 |
240.0 |
| O26 |
C21 |
C20 |
H121 |
240.0 |
240.0 |
| O26 |
C21 |
C20 |
H221 |
120.0 |
119.9 |
| H120 |
C20 |
C19 |
H119 |
77.9 |
180.1 |
| H120 |
C20 |
C19 |
H219 |
317.8 |
60.0 |
| C19 |
C20 |
H120 |
C21 |
240.3 |
240.0 |
| C19 |
C20 |
H120 |
H220 |
120.1 |
120.0 |
| C21 |
C20 |
H120 |
H220 |
239.8 |
240.0 |
| H120 |
C20 |
C21 |
H121 |
278.5 |
180.0 |
| H120 |
C20 |
C21 |
H221 |
38.5 |
300.0 |
| H220 |
C20 |
C19 |
H119 |
197.8 |
300.0 |
| H220 |
C20 |
C19 |
H219 |
77.8 |
180.0 |
| C19 |
C20 |
H220 |
C21 |
119.7 |
120.0 |
| C19 |
C20 |
H220 |
H120 |
239.9 |
240.0 |
| C21 |
C20 |
H220 |
H120 |
120.2 |
120.0 |
| H220 |
C20 |
C21 |
H121 |
158.6 |
60.0 |
| H220 |
C20 |
C21 |
H221 |
278.6 |
180.1 |
| H121 |
C21 |
C20 |
H120 |
278.5 |
180.0 |
| H121 |
C21 |
C20 |
H220 |
158.6 |
60.0 |
| C20 |
C21 |
H121 |
H221 |
120.2 |
120.0 |
| O26 |
C21 |
H121 |
H221 |
239.8 |
240.0 |
| H221 |
C21 |
C20 |
H120 |
38.5 |
300.0 |
| H221 |
C21 |
C20 |
H220 |
278.6 |
180.1 |
| C20 |
C21 |
H221 |
H121 |
239.8 |
240.0 |
| O26 |
C21 |
H221 |
H121 |
120.2 |
120.0 |
| H222 |
C22 |
H122 |
H322 |
120.0 |
119.9 |
| O26 |
C22 |
H122 |
H222 |
120.0 |
120.1 |
| O26 |
C22 |
H122 |
H322 |
240.0 |
240.0 |
| H122 |
C22 |
H222 |
H322 |
240.0 |
240.1 |
| O26 |
C22 |
H222 |
H122 |
240.0 |
240.0 |
| O26 |
C22 |
H222 |
H322 |
120.0 |
120.0 |
| H122 |
C22 |
H322 |
H222 |
120.0 |
120.0 |
| O26 |
C22 |
H322 |
H122 |
120.0 |
120.0 |
| O26 |
C22 |
H322 |
H222 |
240.0 |
240.0 |
| O23 |
C12 |
N02 |
H102 |
360.0 |
180.0 |
| O23 |
C12 |
N02 |
H202 |
180.0 |
0.0 |
| C22 |
O26 |
C21 |
H121 |
28.1 |
60.0 |
| C22 |
O26 |
C21 |
H221 |
268.1 |
299.9 |
| H122 |
C22 |
O26 |
H222 |
240.0 |
240.0 |
| H122 |
C22 |
O26 |
H322 |
120.0 |
120.0 |
| H222 |
C22 |
O26 |
H322 |
240.0 |
240.0 |
| O26 |
C21 |
C20 |
H120 |
158.5 |
60.0 |
| O26 |
C21 |
C20 |
H220 |
38.6 |
300.0 |
| C20 |
C21 |
O26 |
H121 |
120.0 |
120.0 |
| C20 |
C21 |
O26 |
H221 |
240.0 |
240.1 |
| H121 |
C21 |
O26 |
H221 |
120.0 |
120.0 |