PDB Chemical Component X84
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X84
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C08 |
1.308 |
1.389 |
| N01 |
C13 |
1.487 |
1.465 |
| N01 |
HN01 |
1.000 |
0.971 |
| N02 |
C12 |
1.372 |
1.348 |
| N02 |
H102 |
1.000 |
0.970 |
| N02 |
H202 |
1.000 |
0.970 |
| N04 |
C19 |
1.487 |
1.465 |
| N04 |
HN04 |
1.000 |
0.970 |
| N05 |
O24 |
1.310 |
1.218 |
| C06 |
C11 |
1.428 |
1.364 |
| C06 |
H06 |
1.080 |
1.080 |
| C07 |
C06 |
1.432 |
1.399 |
| C07 |
C08 |
1.443 |
1.405 |
| C08 |
C09 |
1.433 |
1.386 |
| C09 |
C10 |
1.434 |
1.388 |
| C09 |
H09 |
1.079 |
1.080 |
| C10 |
N04 |
1.288 |
1.391 |
| C11 |
N05 |
1.302 |
1.481 |
| C11 |
C10 |
1.446 |
1.394 |
| C12 |
C07 |
1.380 |
1.472 |
| C13 |
C14 |
1.516 |
1.507 |
| C13 |
H113 |
1.100 |
1.090 |
| C13 |
H213 |
1.100 |
1.090 |
| C14 |
C15 |
1.402 |
1.382 |
| C15 |
N03 |
1.380 |
1.320 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
N03 |
1.380 |
1.319 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
C16 |
1.405 |
1.382 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
C14 |
1.425 |
1.386 |
| C18 |
C17 |
1.414 |
1.387 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
C20 |
1.525 |
1.529 |
| C19 |
H119 |
1.100 |
1.090 |
| C19 |
H219 |
1.100 |
1.090 |
| C20 |
C21 |
1.520 |
1.531 |
| C20 |
H120 |
1.100 |
1.090 |
| C20 |
H220 |
1.100 |
1.089 |
| C21 |
O23 |
1.407 |
1.430 |
| C21 |
H121 |
1.099 |
1.090 |
| C21 |
H221 |
1.100 |
1.090 |
| O22 |
C12 |
1.209 |
1.216 |
| O23 |
HO23 |
0.950 |
0.966 |
| O25 |
N05 |
1.320 |
1.218 |
Bond Angles for X84
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
N01 |
C13 |
125.2 |
120.1 |
| C08 |
N01 |
HN01 |
104.5 |
120.0 |
| N01 |
C08 |
C07 |
120.0 |
120.2 |
| N01 |
C08 |
C09 |
121.3 |
120.2 |
| C13 |
N01 |
HN01 |
104.5 |
120.0 |
| N01 |
C13 |
C14 |
111.1 |
109.5 |
| N01 |
C13 |
H113 |
108.9 |
109.5 |
| N01 |
C13 |
H213 |
108.9 |
109.5 |
| C12 |
N02 |
H102 |
120.0 |
120.0 |
| C12 |
N02 |
H202 |
120.0 |
120.0 |
| N02 |
C12 |
C07 |
120.1 |
120.0 |
| H102 |
N02 |
H202 |
120.0 |
120.0 |
| C19 |
N04 |
HN04 |
105.4 |
120.0 |
| C10 |
N04 |
C19 |
122.3 |
120.0 |
| N04 |
C19 |
C20 |
109.0 |
109.5 |
| N04 |
C19 |
H119 |
109.6 |
109.4 |
| N04 |
C19 |
H219 |
109.6 |
109.4 |
| C10 |
N04 |
HN04 |
105.4 |
120.0 |
| C11 |
N05 |
O24 |
121.3 |
120.0 |
| C11 |
C06 |
H06 |
119.1 |
119.9 |
| C07 |
C06 |
C11 |
121.7 |
120.1 |
| C06 |
C11 |
C10 |
118.7 |
120.4 |
| C07 |
C06 |
H06 |
119.2 |
119.9 |
| C07 |
C08 |
C09 |
118.7 |
119.6 |
| C08 |
C09 |
C10 |
121.5 |
119.9 |
| C08 |
C09 |
H09 |
119.3 |
120.1 |
| C10 |
C09 |
H09 |
119.3 |
120.1 |
| C14 |
C13 |
H113 |
108.9 |
109.5 |
| C14 |
C13 |
H213 |
108.9 |
109.4 |
| C13 |
C14 |
C15 |
120.4 |
120.4 |
| H113 |
C13 |
H213 |
110.0 |
109.5 |
| C14 |
C15 |
H15 |
118.4 |
119.7 |
| C17 |
C16 |
H16 |
118.4 |
119.6 |
| C18 |
C17 |
H17 |
121.1 |
120.4 |
| C20 |
C19 |
H119 |
109.6 |
109.5 |
| C20 |
C19 |
H219 |
109.6 |
109.5 |
| C19 |
C20 |
C21 |
109.5 |
109.5 |
| C19 |
C20 |
H120 |
109.5 |
109.5 |
| C19 |
C20 |
H220 |
109.4 |
109.5 |
| H119 |
C19 |
H219 |
109.3 |
109.5 |
| C21 |
C20 |
H120 |
109.5 |
109.4 |
| C21 |
C20 |
H220 |
109.5 |
109.5 |
| C20 |
C21 |
O23 |
109.5 |
109.5 |
| C20 |
C21 |
H121 |
109.5 |
109.4 |
| C20 |
C21 |
H221 |
109.4 |
109.5 |
| H120 |
C20 |
H220 |
109.5 |
109.5 |
| O23 |
C21 |
H121 |
109.5 |
109.5 |
| O23 |
C21 |
H221 |
109.5 |
109.5 |
| C21 |
O23 |
HO23 |
109.5 |
114.0 |
| H121 |
C21 |
H221 |
109.5 |
109.5 |
Torsion Angles for X84
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
N01 |
C08 |
HN01 |
240.0 |
180.3 |
| C08 |
N01 |
C13 |
C14 |
88.3 |
180.0 |
| C08 |
N01 |
C13 |
H113 |
208.3 |
300.0 |
| C08 |
N01 |
C13 |
H213 |
328.4 |
60.0 |
| C07 |
C08 |
N01 |
C09 |
180.0 |
180.0 |
| N01 |
C08 |
C09 |
C10 |
180.0 |
180.0 |
| N01 |
C08 |
C09 |
H09 |
0.0 |
359.9 |
| C08 |
N01 |
C13 |
HN01 |
120.0 |
179.7 |
| C13 |
N01 |
C08 |
C07 |
167.5 |
173.4 |
| C13 |
N01 |
C08 |
C09 |
347.5 |
353.4 |
| C14 |
C13 |
N01 |
H113 |
240.0 |
240.0 |
| C14 |
C13 |
N01 |
H213 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
C15 |
223.4 |
90.0 |
| H113 |
C13 |
N01 |
H213 |
240.0 |
240.0 |
| C08 |
N01 |
HN01 |
C13 |
227.0 |
180.3 |
| HN01 |
N01 |
C08 |
C07 |
287.5 |
353.1 |
| HN01 |
N01 |
C08 |
C09 |
107.5 |
173.1 |
| HN01 |
N01 |
C13 |
C14 |
328.3 |
0.3 |
| HN01 |
N01 |
C13 |
H113 |
88.3 |
120.3 |
| HN01 |
N01 |
C13 |
H213 |
208.4 |
240.3 |
| H102 |
N02 |
C12 |
H202 |
180.0 |
180.0 |
| C12 |
N02 |
H102 |
H202 |
180.0 |
180.0 |
| H102 |
N02 |
C12 |
C07 |
180.1 |
0.0 |
| C12 |
N02 |
H202 |
H102 |
180.0 |
180.0 |
| H202 |
N02 |
C12 |
C07 |
0.1 |
180.0 |
| C10 |
N04 |
C19 |
HN04 |
240.0 |
180.0 |
| C20 |
C19 |
N04 |
H119 |
240.0 |
240.0 |
| C20 |
C19 |
N04 |
H219 |
120.0 |
120.0 |
| N04 |
C19 |
C20 |
C21 |
126.8 |
180.0 |
| N04 |
C19 |
C20 |
H120 |
246.8 |
300.0 |
| N04 |
C19 |
C20 |
H220 |
6.8 |
60.0 |
| H119 |
C19 |
N04 |
H219 |
240.0 |
240.0 |
| C10 |
N04 |
HN04 |
C19 |
130.6 |
180.0 |
| HN04 |
N04 |
C19 |
C20 |
352.9 |
0.0 |
| HN04 |
N04 |
C19 |
H119 |
112.9 |
120.0 |
| HN04 |
N04 |
C19 |
H219 |
232.9 |
240.0 |
| C06 |
C11 |
N05 |
O24 |
184.6 |
37.4 |
| C07 |
C06 |
C11 |
H06 |
180.0 |
179.7 |
| C07 |
C06 |
H06 |
C11 |
180.0 |
180.3 |
| H06 |
C06 |
C11 |
C10 |
180.0 |
180.3 |
| N01 |
C08 |
C07 |
C06 |
180.1 |
180.0 |
| N02 |
C12 |
C07 |
C06 |
27.8 |
353.9 |
| C11 |
C06 |
C07 |
H06 |
180.0 |
180.3 |
| C07 |
C06 |
C11 |
C10 |
0.0 |
360.0 |
| C07 |
C08 |
N01 |
C13 |
167.5 |
173.4 |
| C07 |
C08 |
N01 |
HN01 |
287.5 |
353.1 |
| N01 |
C08 |
C07 |
C09 |
180.0 |
180.0 |
| N02 |
C12 |
C07 |
C08 |
207.9 |
173.9 |
| C08 |
C07 |
C06 |
C11 |
359.9 |
360.0 |
| C08 |
C07 |
C06 |
H06 |
179.9 |
179.7 |
| C07 |
C08 |
C09 |
C10 |
360.0 |
0.0 |
| C07 |
C08 |
C09 |
H09 |
180.0 |
180.0 |
| C09 |
C08 |
N01 |
C13 |
347.5 |
353.4 |
| C09 |
C08 |
N01 |
HN01 |
107.5 |
173.1 |
| N01 |
C08 |
C09 |
C07 |
180.0 |
180.0 |
| C10 |
C09 |
C08 |
H09 |
180.0 |
180.1 |
| C09 |
C10 |
N04 |
C19 |
36.2 |
5.9 |
| C09 |
C10 |
N04 |
HN04 |
276.2 |
185.9 |
| C06 |
C11 |
C10 |
C09 |
0.1 |
0.0 |
| C08 |
C09 |
C10 |
H09 |
180.0 |
179.9 |
| C08 |
C09 |
H09 |
C10 |
180.0 |
180.1 |
| C19 |
N04 |
C10 |
HN04 |
120.0 |
180.0 |
| C10 |
N04 |
C19 |
C20 |
232.9 |
180.0 |
| C10 |
N04 |
C19 |
H119 |
352.9 |
300.0 |
| C10 |
N04 |
C19 |
H219 |
112.9 |
60.0 |
| C11 |
C10 |
N04 |
C19 |
216.0 |
185.9 |
| C11 |
C10 |
N04 |
HN04 |
96.0 |
5.9 |
| C10 |
C11 |
N05 |
O24 |
4.8 |
217.1 |
| C10 |
C11 |
C06 |
H06 |
180.0 |
180.3 |
| C11 |
C10 |
C09 |
H09 |
179.9 |
180.0 |
| C07 |
C12 |
N02 |
H102 |
180.1 |
0.0 |
| C07 |
C12 |
N02 |
H202 |
0.1 |
180.0 |
| C12 |
C07 |
C06 |
H06 |
359.9 |
359.7 |
| C14 |
C13 |
N01 |
HN01 |
328.3 |
0.3 |
| N01 |
C13 |
C14 |
H113 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
H213 |
240.0 |
240.0 |
| H113 |
C13 |
C14 |
H213 |
120.0 |
120.0 |
| C13 |
C14 |
C15 |
H15 |
359.8 |
0.0 |
| H113 |
C13 |
N01 |
HN01 |
88.3 |
120.3 |
| N01 |
C13 |
H113 |
C14 |
238.7 |
240.0 |
| N01 |
C13 |
H113 |
H213 |
119.3 |
120.0 |
| C14 |
C13 |
H113 |
H213 |
240.7 |
240.0 |
| H113 |
C13 |
C14 |
C15 |
103.4 |
330.0 |
| H213 |
C13 |
N01 |
HN01 |
208.4 |
240.3 |
| N01 |
C13 |
H213 |
C14 |
121.3 |
120.0 |
| N01 |
C13 |
H213 |
H113 |
240.7 |
240.0 |
| C14 |
C13 |
H213 |
H113 |
119.3 |
120.0 |
| H213 |
C13 |
C14 |
C15 |
343.4 |
210.0 |
| C15 |
C14 |
C13 |
H113 |
103.4 |
330.0 |
| C15 |
C14 |
C13 |
H213 |
343.4 |
210.0 |
| H17 |
C17 |
C16 |
H16 |
360.0 |
360.0 |
| C18 |
C14 |
C13 |
H113 |
283.0 |
150.0 |
| C18 |
C14 |
C13 |
H213 |
163.0 |
30.0 |
| C18 |
C14 |
C15 |
H15 |
180.1 |
180.0 |
| C18 |
C17 |
C16 |
H16 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
359.9 |
0.0 |
| C20 |
C19 |
N04 |
HN04 |
352.9 |
0.0 |
| N04 |
C19 |
C20 |
H119 |
120.0 |
120.0 |
| N04 |
C19 |
C20 |
H219 |
240.0 |
240.0 |
| H119 |
C19 |
C20 |
H219 |
120.0 |
120.1 |
| C21 |
C20 |
C19 |
H120 |
240.0 |
240.0 |
| C21 |
C20 |
C19 |
H220 |
120.0 |
120.0 |
| C19 |
C20 |
C21 |
O23 |
214.4 |
180.0 |
| C19 |
C20 |
C21 |
H121 |
334.4 |
299.9 |
| C19 |
C20 |
C21 |
H221 |
94.4 |
60.0 |
| H120 |
C20 |
C19 |
H220 |
240.0 |
240.0 |
| H119 |
C19 |
N04 |
HN04 |
112.9 |
120.0 |
| N04 |
C19 |
H119 |
C20 |
240.4 |
240.0 |
| N04 |
C19 |
H119 |
H219 |
120.2 |
119.9 |
| C20 |
C19 |
H119 |
H219 |
239.8 |
239.9 |
| H119 |
C19 |
C20 |
C21 |
6.8 |
60.0 |
| H119 |
C19 |
C20 |
H120 |
126.8 |
180.0 |
| H119 |
C19 |
C20 |
H220 |
246.8 |
300.0 |
| H219 |
C19 |
N04 |
HN04 |
232.9 |
240.0 |
| N04 |
C19 |
H219 |
C20 |
119.6 |
120.0 |
| N04 |
C19 |
H219 |
H119 |
239.8 |
240.0 |
| C20 |
C19 |
H219 |
H119 |
120.2 |
120.0 |
| H219 |
C19 |
C20 |
C21 |
246.8 |
300.0 |
| H219 |
C19 |
C20 |
H120 |
6.8 |
59.9 |
| H219 |
C19 |
C20 |
H220 |
126.8 |
180.0 |
| C21 |
C20 |
C19 |
H119 |
6.8 |
60.0 |
| C21 |
C20 |
C19 |
H219 |
246.8 |
300.0 |
| C19 |
C20 |
C21 |
H120 |
120.0 |
120.0 |
| C19 |
C20 |
C21 |
H220 |
240.0 |
239.9 |
| H120 |
C20 |
C21 |
H220 |
120.0 |
120.0 |
| O23 |
C21 |
C20 |
H121 |
240.0 |
240.0 |
| O23 |
C21 |
C20 |
H221 |
120.0 |
120.0 |
| C20 |
C21 |
O23 |
HO23 |
180.0 |
180.0 |
| H121 |
C21 |
C20 |
H221 |
240.0 |
240.0 |
| H120 |
C20 |
C19 |
H119 |
126.8 |
180.0 |
| H120 |
C20 |
C19 |
H219 |
6.8 |
59.9 |
| C19 |
C20 |
H120 |
C21 |
240.0 |
240.0 |
| C19 |
C20 |
H120 |
H220 |
120.0 |
120.1 |
| C21 |
C20 |
H120 |
H220 |
240.0 |
240.0 |
| H120 |
C20 |
C21 |
O23 |
94.4 |
60.0 |
| H120 |
C20 |
C21 |
H121 |
214.4 |
180.0 |
| H120 |
C20 |
C21 |
H221 |
334.3 |
300.0 |
| H220 |
C20 |
C19 |
H119 |
246.8 |
300.0 |
| H220 |
C20 |
C19 |
H219 |
126.8 |
180.0 |
| C19 |
C20 |
H220 |
C21 |
120.0 |
120.0 |
| C19 |
C20 |
H220 |
H120 |
240.0 |
240.0 |
| C21 |
C20 |
H220 |
H120 |
120.0 |
119.9 |
| H220 |
C20 |
C21 |
O23 |
334.3 |
300.0 |
| H220 |
C20 |
C21 |
H121 |
94.3 |
60.0 |
| H220 |
C20 |
C21 |
H221 |
214.3 |
180.0 |
| O23 |
C21 |
C20 |
H120 |
94.4 |
60.0 |
| O23 |
C21 |
C20 |
H220 |
334.3 |
300.0 |
| C20 |
C21 |
O23 |
H121 |
120.0 |
119.9 |
| C20 |
C21 |
O23 |
H221 |
240.0 |
240.0 |
| H121 |
C21 |
O23 |
H221 |
120.0 |
120.0 |
| H121 |
C21 |
C20 |
H120 |
214.4 |
180.0 |
| H121 |
C21 |
C20 |
H220 |
94.3 |
60.0 |
| C20 |
C21 |
H121 |
O23 |
240.0 |
240.0 |
| C20 |
C21 |
H121 |
H221 |
120.0 |
120.0 |
| O23 |
C21 |
H121 |
H221 |
240.0 |
240.0 |
| H121 |
C21 |
O23 |
HO23 |
60.0 |
60.1 |
| H221 |
C21 |
C20 |
H120 |
334.3 |
300.0 |
| H221 |
C21 |
C20 |
H220 |
214.3 |
180.0 |
| C20 |
C21 |
H221 |
O23 |
120.0 |
120.0 |
| C20 |
C21 |
H221 |
H121 |
240.0 |
240.0 |
| O23 |
C21 |
H221 |
H121 |
120.0 |
120.0 |
| H221 |
C21 |
O23 |
HO23 |
300.0 |
300.0 |
| O22 |
C12 |
N02 |
H102 |
0.0 |
180.0 |
| O22 |
C12 |
N02 |
H202 |
180.0 |
360.0 |
| HO23 |
O23 |
C21 |
H121 |
60.0 |
60.1 |
| HO23 |
O23 |
C21 |
H221 |
300.0 |
300.0 |