Atom Nomenclature for X84

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for X84

Atom Name (V3) Atom Name (V2)
N01 N01
N02 N02
N03 N03
N04 N04
N05 N05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
O22 O22
O23 O23
O24 O24
O25 O25
HN01 HN01
H102 H102
H202 H202
HN04 HN04
H06 H06
H09 H09
H113 H113
H213 H213
H15 H15
H16 H16
H17 H17
H18 H18
H119 H119
H219 H219
H120 H120
H220 H220
H121 H121
H221 H221
HO23 HO23