PDB Chemical Component X77
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X77
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C33 |
N32 |
1.331 |
1.359 |
| C33 |
N34 |
1.347 |
1.302 |
| N32 |
C31 |
1.328 |
1.359 |
| N34 |
C30 |
1.316 |
1.357 |
| C31 |
C30 |
1.382 |
1.364 |
| C30 |
C02 |
1.546 |
1.473 |
| C27 |
C24 |
1.527 |
1.529 |
| C02 |
O01 |
1.182 |
1.216 |
| C02 |
N03 |
1.469 |
1.348 |
| C26 |
C24 |
1.544 |
1.530 |
| C28 |
C29 |
1.406 |
1.381 |
| C28 |
C23 |
1.394 |
1.382 |
| C24 |
C23 |
1.573 |
1.507 |
| C24 |
C25 |
1.532 |
1.530 |
| C29 |
C20 |
1.382 |
1.389 |
| C23 |
C22 |
1.400 |
1.383 |
| C20 |
N03 |
1.482 |
1.398 |
| C20 |
C21 |
1.398 |
1.389 |
| C22 |
C21 |
1.401 |
1.381 |
| N03 |
C04 |
1.433 |
1.466 |
| C19 |
N18 |
1.352 |
1.319 |
| C19 |
C14 |
1.369 |
1.382 |
| C04 |
C14 |
1.500 |
1.507 |
| C04 |
C05 |
1.557 |
1.507 |
| N18 |
C17 |
1.343 |
1.319 |
| C14 |
C15 |
1.350 |
1.386 |
| O13 |
C05 |
1.204 |
1.213 |
| C17 |
C16 |
1.382 |
1.382 |
| C05 |
N06 |
1.473 |
1.348 |
| C15 |
C16 |
1.372 |
1.387 |
| N06 |
C07 |
1.442 |
1.464 |
| C12 |
C07 |
1.538 |
1.530 |
| C12 |
C11 |
1.538 |
1.530 |
| C07 |
C08 |
1.526 |
1.530 |
| C11 |
C10 |
1.515 |
1.530 |
| C08 |
C09 |
1.528 |
1.530 |
| C10 |
C09 |
1.500 |
1.530 |
| C04 |
H041 |
1.100 |
1.090 |
| C07 |
H071 |
1.100 |
1.091 |
| C08 |
H081 |
1.100 |
1.090 |
| C08 |
H082 |
1.100 |
1.090 |
| C09 |
H091 |
1.100 |
1.090 |
| C09 |
H092 |
1.100 |
1.090 |
| C10 |
H101 |
1.100 |
1.090 |
| C10 |
H102 |
1.100 |
1.090 |
| C11 |
H112 |
1.100 |
1.090 |
| C11 |
H111 |
1.100 |
1.091 |
| C12 |
H121 |
1.100 |
1.090 |
| C12 |
H122 |
1.100 |
1.091 |
| C15 |
H151 |
1.080 |
1.079 |
| C16 |
H161 |
1.080 |
1.080 |
| C17 |
H171 |
1.080 |
1.080 |
| C19 |
H191 |
1.080 |
1.080 |
| C21 |
H211 |
1.080 |
1.079 |
| C22 |
H221 |
1.080 |
1.080 |
| C25 |
H251 |
1.100 |
1.090 |
| C25 |
H252 |
1.100 |
1.090 |
| C25 |
H253 |
1.100 |
1.090 |
| C26 |
H261 |
1.100 |
1.090 |
| C26 |
H263 |
1.100 |
1.091 |
| C26 |
H262 |
1.100 |
1.090 |
| C27 |
H272 |
1.100 |
1.090 |
| C27 |
H273 |
1.100 |
1.090 |
| C27 |
H271 |
1.100 |
1.090 |
| C28 |
H281 |
1.080 |
1.080 |
| C29 |
H291 |
1.080 |
1.080 |
| C31 |
H311 |
1.080 |
1.080 |
| C33 |
H331 |
1.080 |
1.080 |
| N06 |
H061 |
0.999 |
0.970 |
| N32 |
H1 |
1.000 |
0.970 |
Bond Angles for X77
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N32 |
C33 |
N34 |
109.2 |
109.0 |
| N32 |
C33 |
H331 |
125.4 |
125.5 |
| C33 |
N32 |
H1 |
126.3 |
126.2 |
| N34 |
C33 |
H331 |
125.4 |
125.5 |
| N32 |
C31 |
H311 |
126.0 |
126.6 |
| C30 |
C02 |
O01 |
120.9 |
120.0 |
| C30 |
C02 |
N03 |
121.9 |
120.0 |
| N03 |
C02 |
O01 |
117.2 |
120.0 |
| C02 |
N03 |
C20 |
123.4 |
120.0 |
| C02 |
N03 |
C04 |
119.6 |
120.0 |
| C29 |
C28 |
H281 |
119.9 |
119.9 |
| C28 |
C29 |
H291 |
120.2 |
120.0 |
| C24 |
C25 |
H251 |
109.5 |
109.5 |
| C24 |
C25 |
H252 |
109.5 |
109.5 |
| C24 |
C25 |
H253 |
109.5 |
109.5 |
| C29 |
C20 |
N03 |
121.1 |
120.1 |
| C23 |
C22 |
H221 |
120.0 |
120.0 |
| C21 |
C20 |
N03 |
117.9 |
120.0 |
| C20 |
C21 |
H211 |
120.3 |
120.1 |
| C22 |
C21 |
H211 |
120.3 |
120.1 |
| N03 |
C04 |
H041 |
110.1 |
109.4 |
| N18 |
C19 |
H191 |
119.8 |
119.6 |
| C05 |
C04 |
C14 |
102.0 |
109.5 |
| C04 |
C14 |
C15 |
118.1 |
120.4 |
| C14 |
C04 |
H041 |
109.2 |
109.5 |
| C04 |
C05 |
N06 |
117.0 |
120.0 |
| C05 |
C04 |
H041 |
108.5 |
109.5 |
| N18 |
C17 |
H171 |
119.7 |
119.6 |
| C14 |
C15 |
C16 |
118.9 |
118.4 |
| C14 |
C15 |
H151 |
120.6 |
120.8 |
| C17 |
C16 |
H161 |
120.2 |
120.4 |
| C05 |
N06 |
C07 |
123.3 |
120.0 |
| C05 |
N06 |
H061 |
118.3 |
119.9 |
| C16 |
C15 |
H151 |
120.6 |
120.8 |
| C15 |
C16 |
H161 |
120.2 |
120.5 |
| N06 |
C07 |
H071 |
111.5 |
109.5 |
| C12 |
C07 |
H071 |
110.1 |
109.5 |
| C12 |
C11 |
H112 |
108.1 |
109.5 |
| C12 |
C11 |
H111 |
108.1 |
109.4 |
| C07 |
C08 |
C09 |
111.9 |
109.5 |
| C08 |
C07 |
H071 |
110.3 |
109.4 |
| C07 |
C08 |
H081 |
108.9 |
109.5 |
| C07 |
C08 |
H082 |
108.9 |
109.5 |
| C11 |
C10 |
H101 |
108.4 |
109.5 |
| C11 |
C10 |
H102 |
108.4 |
109.5 |
| C09 |
C08 |
H081 |
108.8 |
109.5 |
| C09 |
C08 |
H082 |
108.9 |
109.5 |
| C08 |
C09 |
H091 |
109.4 |
109.5 |
| C08 |
C09 |
H092 |
109.4 |
109.5 |
| C10 |
C09 |
H091 |
109.4 |
109.5 |
| C10 |
C09 |
H092 |
109.4 |
109.5 |
| H081 |
C08 |
H082 |
109.5 |
109.4 |
| H091 |
C09 |
H092 |
109.5 |
109.4 |
| H101 |
C10 |
H102 |
109.4 |
109.5 |
| H112 |
C11 |
H111 |
109.5 |
109.5 |
| H121 |
C12 |
H122 |
109.5 |
109.5 |
| H251 |
C25 |
H252 |
109.4 |
109.5 |
| H251 |
C25 |
H253 |
109.5 |
109.4 |
| H252 |
C25 |
H253 |
109.5 |
109.4 |
| H261 |
C26 |
H263 |
109.5 |
109.5 |
| H261 |
C26 |
H262 |
109.5 |
109.5 |
| H263 |
C26 |
H262 |
109.4 |
109.4 |
| H272 |
C27 |
H273 |
109.5 |
109.4 |
| H272 |
C27 |
H271 |
109.5 |
109.4 |
| H273 |
C27 |
H271 |
109.5 |
109.5 |
Torsion Angles for X77
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N34 |
C33 |
N32 |
H331 |
180.0 |
179.7 |
| C33 |
N32 |
C31 |
H311 |
180.1 |
180.1 |
| N32 |
C33 |
N34 |
H331 |
180.0 |
180.3 |
| N34 |
C33 |
N32 |
H1 |
179.6 |
180.0 |
| N34 |
C30 |
C02 |
O01 |
2.1 |
185.2 |
| C31 |
C30 |
C02 |
O01 |
184.0 |
5.5 |
| C31 |
C30 |
C02 |
N03 |
3.8 |
185.8 |
| N03 |
C02 |
C30 |
O01 |
179.8 |
180.3 |
| C30 |
C02 |
N03 |
C20 |
356.5 |
174.8 |
| C30 |
C02 |
N03 |
C04 |
184.2 |
354.8 |
| C27 |
C24 |
C25 |
H251 |
180.0 |
180.0 |
| C27 |
C24 |
C25 |
H252 |
300.0 |
300.0 |
| C27 |
C24 |
C25 |
H253 |
60.0 |
60.0 |
| C30 |
C02 |
O01 |
N03 |
179.8 |
180.3 |
| O01 |
C02 |
N03 |
C20 |
176.3 |
355.1 |
| O01 |
C02 |
N03 |
C04 |
4.0 |
175.1 |
| C30 |
C02 |
N03 |
O01 |
180.2 |
179.7 |
| C29 |
C20 |
N03 |
C02 |
88.5 |
110.3 |
| C21 |
C20 |
N03 |
C02 |
269.6 |
290.6 |
| C02 |
N03 |
C04 |
H041 |
71.1 |
308.1 |
| C26 |
C24 |
C25 |
H251 |
62.5 |
300.0 |
| C26 |
C24 |
C25 |
H252 |
182.5 |
60.0 |
| C26 |
C24 |
C25 |
H253 |
302.5 |
180.0 |
| C28 |
C29 |
C20 |
N03 |
180.1 |
179.8 |
| C28 |
C23 |
C22 |
H221 |
180.4 |
179.9 |
| C24 |
C23 |
C22 |
H221 |
359.8 |
0.0 |
| H251 |
C25 |
C24 |
H252 |
240.0 |
240.0 |
| H251 |
C25 |
C24 |
H253 |
120.0 |
120.0 |
| H252 |
C25 |
C24 |
H253 |
240.0 |
240.0 |
| C02 |
N03 |
C20 |
C29 |
88.5 |
110.3 |
| C21 |
C20 |
C29 |
N03 |
178.9 |
179.7 |
| C29 |
C20 |
C21 |
H211 |
181.0 |
180.2 |
| C23 |
C22 |
C21 |
H211 |
179.3 |
180.1 |
| C20 |
N03 |
C02 |
O01 |
176.3 |
355.1 |
| C02 |
N03 |
C20 |
C04 |
187.4 |
180.0 |
| N03 |
C20 |
C21 |
H211 |
359.9 |
359.9 |
| C20 |
N03 |
C04 |
H041 |
258.2 |
128.1 |
| C02 |
N03 |
C20 |
C21 |
269.6 |
290.6 |
| C29 |
C20 |
C21 |
N03 |
181.0 |
180.3 |
| C22 |
C21 |
C20 |
H211 |
180.0 |
180.0 |
| C22 |
C21 |
C20 |
N03 |
179.9 |
180.0 |
| C20 |
C21 |
C22 |
H211 |
180.0 |
180.0 |
| C04 |
N03 |
C02 |
O01 |
4.0 |
175.1 |
| C02 |
N03 |
C04 |
C20 |
172.9 |
180.0 |
| C14 |
C04 |
N03 |
H041 |
233.5 |
240.0 |
| N03 |
C04 |
C05 |
N06 |
246.0 |
180.0 |
| C05 |
C04 |
N03 |
H041 |
118.4 |
120.0 |
| C19 |
N18 |
C17 |
H171 |
181.2 |
179.7 |
| C19 |
C14 |
C04 |
H041 |
191.6 |
185.0 |
| C19 |
C14 |
C15 |
H151 |
179.6 |
180.3 |
| C02 |
N03 |
C04 |
C14 |
304.6 |
188.1 |
| N03 |
C04 |
C14 |
H041 |
127.0 |
120.0 |
| C14 |
C04 |
C05 |
N06 |
120.7 |
60.0 |
| C05 |
C04 |
C14 |
H041 |
245.3 |
239.9 |
| C04 |
C14 |
C15 |
C16 |
178.0 |
180.0 |
| C04 |
C14 |
C15 |
H151 |
357.9 |
360.0 |
| C02 |
N03 |
C04 |
C05 |
189.5 |
68.1 |
| N03 |
C04 |
C05 |
H041 |
240.5 |
240.0 |
| C05 |
C04 |
C14 |
C15 |
258.6 |
245.2 |
| C14 |
C04 |
C05 |
H041 |
115.2 |
120.1 |
| C04 |
C05 |
N06 |
C07 |
180.8 |
180.0 |
| C04 |
C05 |
N06 |
H061 |
0.8 |
0.0 |
| N18 |
C17 |
C16 |
H161 |
179.7 |
180.0 |
| C15 |
C14 |
C04 |
H041 |
13.3 |
5.3 |
| C16 |
C15 |
C14 |
H151 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
H161 |
179.9 |
180.0 |
| O13 |
C05 |
C04 |
H041 |
187.8 |
119.9 |
| O13 |
C05 |
N06 |
H061 |
178.5 |
180.0 |
| C17 |
C16 |
C15 |
H151 |
179.9 |
180.0 |
| C15 |
C16 |
C17 |
H161 |
180.0 |
180.0 |
| N06 |
C05 |
C04 |
C14 |
120.7 |
60.0 |
| N06 |
C05 |
C04 |
H041 |
5.5 |
299.9 |
| C05 |
N06 |
C07 |
H071 |
20.9 |
35.0 |
| C14 |
C15 |
C16 |
H151 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
H161 |
180.0 |
180.0 |
| C05 |
N06 |
C07 |
H061 |
180.0 |
180.0 |
| C12 |
C07 |
N06 |
H071 |
239.0 |
240.0 |
| C08 |
C07 |
N06 |
H071 |
120.5 |
120.0 |
| N06 |
C07 |
C08 |
H081 |
295.8 |
300.0 |
| N06 |
C07 |
C08 |
H082 |
55.1 |
60.0 |
| C05 |
N06 |
C07 |
C12 |
259.8 |
275.0 |
| N06 |
C07 |
C12 |
H071 |
121.9 |
120.0 |
| C08 |
C07 |
C12 |
H071 |
238.0 |
240.0 |
| C12 |
C07 |
C08 |
H081 |
178.9 |
180.0 |
| C12 |
C07 |
C08 |
H082 |
298.2 |
300.0 |
| C11 |
C12 |
C07 |
H071 |
72.0 |
59.9 |
| C12 |
C11 |
C10 |
H101 |
73.1 |
180.0 |
| C12 |
C11 |
C10 |
H102 |
191.9 |
60.0 |
| H112 |
C11 |
C12 |
H111 |
241.6 |
120.0 |
| C05 |
N06 |
C07 |
C08 |
141.4 |
155.0 |
| N06 |
C07 |
C08 |
H071 |
238.7 |
239.9 |
| C12 |
C07 |
C08 |
H071 |
121.9 |
120.0 |
| C09 |
C08 |
C07 |
H081 |
239.6 |
240.0 |
| C09 |
C08 |
C07 |
H082 |
120.4 |
120.0 |
| C07 |
C08 |
C09 |
H091 |
60.0 |
60.0 |
| C07 |
C08 |
C09 |
H092 |
180.0 |
180.0 |
| H081 |
C08 |
C07 |
H082 |
240.7 |
240.0 |
| C11 |
C10 |
C09 |
H091 |
293.4 |
300.0 |
| C11 |
C10 |
C09 |
H092 |
173.4 |
180.0 |
| H101 |
C10 |
C11 |
H102 |
241.2 |
120.0 |
| C09 |
C08 |
C07 |
H071 |
296.7 |
300.0 |
| C07 |
C08 |
C09 |
H081 |
120.4 |
120.0 |
| C07 |
C08 |
C09 |
H082 |
239.6 |
240.0 |
| C10 |
C09 |
C08 |
H091 |
240.0 |
240.0 |
| C10 |
C09 |
C08 |
H092 |
120.0 |
120.0 |
| H081 |
C08 |
C09 |
H082 |
119.2 |
120.0 |
| H091 |
C09 |
C08 |
H092 |
240.0 |
240.0 |
| C10 |
C09 |
C08 |
H081 |
179.7 |
179.9 |
| C10 |
C09 |
C08 |
H082 |
60.4 |
60.0 |
| C08 |
C09 |
C10 |
H091 |
120.0 |
120.0 |
| C08 |
C09 |
C10 |
H092 |
240.0 |
240.0 |
| H091 |
C09 |
C10 |
H092 |
120.0 |
120.0 |
| C05 |
C04 |
H041 |
C14 |
110.4 |
120.1 |
| H041 |
C04 |
C14 |
C15 |
13.3 |
5.3 |
| H041 |
C04 |
C05 |
N06 |
5.5 |
299.9 |
| H071 |
C07 |
C08 |
C09 |
296.7 |
300.0 |
| H071 |
C07 |
C08 |
H081 |
57.1 |
60.1 |
| H071 |
C07 |
C08 |
H082 |
176.3 |
180.0 |
| C07 |
C08 |
H081 |
C09 |
237.8 |
240.0 |
| H081 |
C08 |
C07 |
H071 |
57.1 |
60.1 |
| C07 |
C08 |
H081 |
H082 |
118.9 |
120.0 |
| C09 |
C08 |
H081 |
H082 |
241.1 |
240.0 |
| H081 |
C08 |
C09 |
H091 |
299.7 |
300.0 |
| H081 |
C08 |
C09 |
H092 |
59.6 |
59.9 |
| C07 |
C08 |
H082 |
C09 |
122.2 |
120.0 |
| H082 |
C08 |
C07 |
H071 |
176.3 |
180.0 |
| C07 |
C08 |
H082 |
H081 |
241.1 |
240.0 |
| C09 |
C08 |
H082 |
H081 |
118.9 |
120.0 |
| H082 |
C08 |
C09 |
H091 |
180.4 |
180.0 |
| H082 |
C08 |
C09 |
H092 |
300.4 |
300.0 |
| H091 |
C09 |
C08 |
H081 |
299.7 |
300.0 |
| H091 |
C09 |
C08 |
H082 |
180.4 |
180.0 |
| C08 |
C09 |
H091 |
H092 |
119.9 |
120.0 |
| C10 |
C09 |
H091 |
H092 |
240.1 |
240.0 |
| H092 |
C09 |
C08 |
H081 |
59.6 |
59.9 |
| H092 |
C09 |
C08 |
H082 |
300.4 |
300.0 |
| C08 |
C09 |
H092 |
H091 |
240.0 |
240.0 |
| C10 |
C09 |
H092 |
H091 |
119.9 |
120.0 |
| C11 |
C10 |
H101 |
H102 |
118.1 |
240.0 |
| H101 |
C10 |
C09 |
H091 |
172.8 |
60.0 |
| H101 |
C10 |
C09 |
H092 |
52.8 |
300.0 |
| C11 |
C10 |
H102 |
H101 |
241.9 |
120.0 |
| H102 |
C10 |
C09 |
H091 |
54.0 |
180.0 |
| H102 |
C10 |
C09 |
H092 |
294.0 |
60.0 |
| C12 |
C11 |
H112 |
H111 |
117.5 |
240.0 |
| H112 |
C11 |
C10 |
H101 |
312.3 |
300.0 |
| H112 |
C11 |
C10 |
H102 |
71.1 |
180.0 |
| C12 |
C11 |
H111 |
H112 |
242.5 |
120.0 |
| H111 |
C11 |
C10 |
H101 |
193.9 |
60.1 |
| H111 |
C11 |
C10 |
H102 |
312.7 |
300.0 |
| H121 |
C12 |
C07 |
H071 |
192.4 |
179.9 |
| H121 |
C12 |
C11 |
H112 |
45.6 |
180.0 |
| H121 |
C12 |
C11 |
H111 |
164.0 |
60.0 |
| H122 |
C12 |
C07 |
H071 |
311.6 |
300.0 |
| H122 |
C12 |
C11 |
H112 |
286.4 |
60.0 |
| H122 |
C12 |
C11 |
H111 |
44.8 |
299.9 |
| C14 |
C15 |
H151 |
C16 |
180.0 |
180.0 |
| H151 |
C15 |
C16 |
H161 |
359.9 |
0.0 |
| H161 |
C16 |
C15 |
H151 |
359.9 |
0.0 |
| H171 |
C17 |
C16 |
H161 |
359.7 |
360.0 |
| H211 |
C21 |
C20 |
N03 |
359.9 |
359.9 |
| H221 |
C22 |
C21 |
H211 |
359.3 |
0.1 |
| C24 |
C25 |
H251 |
H252 |
120.0 |
120.0 |
| C24 |
C25 |
H251 |
H253 |
240.0 |
240.0 |
| H252 |
C25 |
H251 |
H253 |
120.0 |
119.9 |
| C24 |
C25 |
H252 |
H251 |
240.0 |
240.0 |
| C24 |
C25 |
H252 |
H253 |
120.0 |
120.0 |
| H251 |
C25 |
H252 |
H253 |
240.0 |
240.1 |
| C24 |
C25 |
H253 |
H251 |
120.0 |
120.0 |
| C24 |
C25 |
H253 |
H252 |
240.0 |
239.9 |
| H251 |
C25 |
H253 |
H252 |
120.0 |
120.0 |
| H263 |
C26 |
H261 |
H262 |
120.0 |
119.9 |
| H261 |
C26 |
H263 |
H262 |
240.0 |
240.0 |
| H261 |
C26 |
H262 |
H263 |
120.0 |
120.0 |
| H273 |
C27 |
H272 |
H271 |
120.0 |
119.9 |
| H272 |
C27 |
H273 |
H271 |
240.0 |
240.1 |
| H272 |
C27 |
H271 |
H273 |
120.0 |
119.9 |
| H281 |
C28 |
C29 |
H291 |
0.6 |
359.6 |
| H291 |
C29 |
C28 |
H281 |
0.6 |
359.6 |
| H291 |
C29 |
C20 |
N03 |
0.1 |
0.2 |
| N32 |
C33 |
H331 |
N34 |
180.0 |
179.6 |
| H331 |
C33 |
N32 |
H1 |
359.6 |
0.4 |
| C05 |
N06 |
H061 |
C07 |
180.0 |
180.0 |
| H061 |
N06 |
C07 |
H071 |
200.9 |
215.0 |
| H1 |
N32 |
C33 |
N34 |
179.6 |
180.0 |
| H1 |
N32 |
C33 |
H331 |
359.6 |
0.4 |
| H1 |
N32 |
C31 |
H311 |
0.1 |
359.7 |