PDB Chemical Component X6K

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X6K

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C02 1.346 1.317
N01 C06 1.446 1.326
C02 C03 1.413 1.384
C03 C04 1.383 1.385
C04 C05 1.400 1.392
C05 C06 1.359 1.405
C05 C09 1.511 1.471
C06 O07 1.451 1.351
O07 C08 1.454 1.349
C08 C09 1.361 1.401
C08 C11 1.424 1.401
C09 N10 1.314 1.329
N10 C19 1.443 1.324
C11 N12 1.451 1.386
C11 N18 1.345 1.328
N12 C13 1.475 1.470
N12 C17 1.464 1.471
C13 C14 1.515 1.532
C14 O15 1.429 1.430
O15 C16 1.437 1.431
C16 C17 1.535 1.531
N18 C19 1.321 1.327
C19 C20 1.515 1.483
C20 C21 1.369 1.395
C20 C26 1.494 1.393
C21 C22 1.409 1.380
C22 C23 1.454 1.383
C23 C24 1.418 1.387
C24 O25 1.400 1.359
C24 C26 1.364 1.385
C02 H02 1.080 1.080
C03 H03 1.080 1.081
C04 H04 1.081 1.080
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C17 H171 1.100 1.091
C17 H172 1.100 1.089
C14 H141 1.100 1.090
C14 H142 1.100 1.091
C16 H161 1.100 1.090
C16 H162 1.100 1.090
C21 H21 1.080 1.080
C26 H26 1.080 1.080
C22 H22 1.080 1.080
C23 H23 1.080 1.081
O25 H25 0.950 0.967

Bond Angles for X6K

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C02 N01 C06 119.7 121.9
N01 C02 C03 120.0 121.5
N01 C02 H02 120.0 119.2
N01 C06 C05 119.8 119.6
N01 C06 O07 132.3 132.2
C02 C03 C04 120.7 119.2
C03 C02 H02 120.0 119.3
C02 C03 H03 119.7 120.4
C03 C04 C05 119.2 118.1
C04 C03 H03 119.6 120.4
C03 C04 H04 120.4 121.0
C04 C05 C06 120.7 119.7
C04 C05 C09 131.5 134.4
C05 C04 H04 120.4 120.9
C06 C05 C09 107.8 105.9
C05 C06 O07 107.8 108.3
C05 C09 C08 108.5 105.6
C05 C09 N10 131.0 134.9
C06 O07 C08 108.6 111.6
O07 C08 C09 107.2 108.7
O07 C08 C11 133.4 133.3
C09 C08 C11 119.4 118.0
C08 C09 N10 120.5 119.5
C08 C11 N12 123.3 120.5
C08 C11 N18 119.7 118.8
C09 N10 C19 119.9 120.5
N10 C19 N18 120.0 121.9
N10 C19 C20 118.2 119.0
N12 C11 N18 117.0 120.6
C11 N12 C13 109.3 111.0
C11 N12 C17 128.6 111.1
C11 N18 C19 120.5 121.2
C13 N12 C17 122.1 110.7
N12 C13 C14 113.0 109.3
N12 C13 H131 108.3 109.5
N12 C13 H132 107.6 109.5
N12 C17 C16 113.3 109.3
N12 C17 H171 108.2 109.5
N12 C17 H172 107.4 109.5
C13 C14 O15 110.4 109.3
C14 C13 H131 108.3 109.5
C14 C13 H132 107.5 109.5
C13 C14 H141 109.2 109.5
C13 C14 H142 109.0 109.5
C14 O15 C16 113.4 113.8
O15 C14 H141 109.2 109.5
O15 C14 H142 108.9 109.5
O15 C16 C17 112.2 109.2
O15 C16 H161 108.6 109.5
O15 C16 H162 108.0 109.5
C16 C17 H171 108.2 109.5
C16 C17 H172 107.4 109.5
C17 C16 H161 108.6 109.5
C17 C16 H162 108.0 109.5
N18 C19 C20 121.5 119.1
C19 C20 C21 119.3 120.1
C19 C20 C26 119.7 120.1
C21 C20 C26 120.3 119.8
C20 C21 C22 120.2 120.0
C20 C21 H21 119.9 120.0
C20 C26 C24 119.4 119.8
C20 C26 H26 120.3 120.1
C21 C22 C23 119.5 120.2
C22 C21 H21 119.9 120.0
C21 C22 H22 120.3 119.9
C22 C23 C24 120.0 120.2
C23 C22 H22 120.3 119.9
C22 C23 H23 120.0 119.9
C23 C24 O25 121.2 120.0
C23 C24 C26 120.4 120.1
C24 C23 H23 120.0 120.0
O25 C24 C26 118.4 120.0
C24 O25 H25 109.5 114.1
C24 C26 H26 120.3 120.1
H131 C13 H132 112.3 109.5
H171 C17 H172 112.5 109.5
H141 C14 H142 110.2 109.5
H161 C16 H162 111.5 109.6

Torsion Angles for X6K

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C02 N01 C06 C05 360.0 0.0
C02 N01 C06 O07 180.3 179.9
N01 C02 C03 C04 0.1 359.9
C03 C02 N01 H02 180.0 180.1
N01 C02 C03 H03 180.1 180.0
C06 N01 C02 C03 359.9 0.0
C06 N01 C02 H02 179.9 179.9
C04 C05 C06 N01 0.1 360.0
N01 C06 C05 C09 180.4 179.9
C05 C06 N01 O07 179.7 180.1
N01 C06 O07 C08 179.7 180.1
C03 C02 N01 C06 359.9 0.0
N01 C02 C03 H02 180.0 179.9
C02 C03 C04 C05 359.9 0.1
C04 C03 C02 H03 180.0 179.9
C02 C03 C04 H04 179.9 180.0
C04 C03 C02 H02 180.1 180.0
C02 C03 C04 H03 180.0 180.1
C03 C04 C05 C06 360.0 360.0
C03 C04 C05 C09 179.5 180.0
C05 C04 C03 H04 180.0 180.1
N01 C06 C05 C04 0.1 360.0
C05 C04 C03 H03 179.9 180.0
C03 C04 C05 H04 180.0 179.9
C06 C05 C04 C09 180.5 179.9
C04 C05 C06 O07 179.8 180.1
C04 C05 C09 C08 180.1 180.0
C04 C05 C09 N10 0.6 359.9
N01 C06 C05 O07 180.2 179.9
C04 C05 C06 C09 179.6 180.1
C06 C05 C04 H04 180.0 180.1
C06 C05 C09 C08 359.7 0.0
C06 C05 C09 N10 180.2 180.0
C05 C06 O07 C08 359.9 360.0
C04 C05 C09 C06 180.4 179.9
C09 C05 C04 H04 359.5 0.2
C09 C05 C06 O07 0.2 360.0
O07 C08 C09 C05 0.3 359.9
C05 C09 C08 C11 180.4 180.0
C08 C09 C05 N10 179.5 180.1
C05 C09 N10 C19 180.6 180.0
N01 C06 O07 C05 179.7 180.1
O07 C06 C05 C09 0.2 360.0
C06 O07 C08 C09 359.9 0.1
C06 O07 C08 C11 179.7 180.0
C05 C09 C08 O07 0.3 359.9
C09 C08 O07 C11 180.1 180.1
O07 C08 C09 N10 179.8 180.0
O07 C08 C11 N12 359.5 0.1
O07 C08 C11 N18 180.1 180.0
C05 C09 C08 N10 180.4 180.0
O07 C08 C09 C11 179.9 179.9
C09 C08 C11 N12 179.4 180.0
C09 C08 C11 N18 360.0 359.9
C08 C09 N10 C19 1.2 360.0
O07 C08 C11 C09 180.2 180.1
C11 C08 C09 N10 359.9 0.1
N12 C11 C08 N18 179.4 180.1
C08 C11 N12 C13 9.1 180.0
C08 C11 N12 C17 189.1 56.4
C08 C11 N18 C19 358.9 0.0
C05 C09 N10 C08 179.4 180.1
N10 C09 C08 C11 359.9 0.1
C09 N10 C19 N18 357.7 0.0
C09 N10 C19 C20 183.0 180.0
C11 N18 C19 N10 2.2 360.0
N18 C19 N10 C20 174.7 180.0
N10 C19 C20 C21 147.7 180.0
N10 C19 C20 C26 337.6 359.7
C08 C11 N12 N18 180.6 179.9
N12 C11 N18 C19 179.5 180.0
C13 N12 C11 C17 180.0 123.6
C11 N12 C13 C14 207.7 177.6
C11 N12 C13 H131 327.6 297.5
C11 N12 C13 H132 89.2 57.6
C11 N12 C17 C16 156.5 182.4
C11 N12 C17 H171 276.5 302.3
C11 N12 C17 H172 38.1 62.4
C08 C11 N18 N12 179.4 180.1
N10 C19 N18 C11 2.2 360.0
N18 C11 N12 C13 188.5 0.1
N18 C11 N12 C17 8.5 236.4
C11 N18 C19 C20 176.7 180.0
C13 N12 C11 N18 188.5 0.1
C11 N12 C13 C17 180.0 236.2
C13 N12 C17 C16 336.5 58.6
C13 N12 C17 H171 96.5 178.6
C13 N12 C17 H172 218.2 298.6
N12 C13 C14 O15 315.1 56.8
C14 C13 N12 H131 240.0 240.1
C14 C13 N12 H132 118.5 120.0
N12 C13 C14 H141 75.1 176.8
N12 C13 C14 H142 195.5 296.9
H131 C13 N12 H132 238.5 239.9
C17 N12 C11 N18 8.5 236.4
C11 N12 C17 C13 180.0 123.8
C17 N12 C13 C14 27.6 301.4
C17 N12 C13 H131 147.6 61.3
C17 N12 C13 H132 269.2 181.5
O15 C16 C17 N12 36.9 303.1
C16 C17 N12 H171 240.0 240.1
C16 C17 N12 H172 118.4 120.0
N12 C17 C16 H161 276.8 183.2
N12 C17 C16 H162 155.7 63.0
H171 C17 N12 H172 238.3 239.9
C14 C13 N12 C17 27.6 301.4
N12 C13 C14 H131 120.0 119.9
N12 C13 C14 H132 241.5 240.0
C13 C14 O15 C16 63.1 301.4
O15 C14 C13 H141 240.0 240.0
O15 C14 C13 H142 119.6 119.9
H131 C13 C14 H132 121.5 120.1
H141 C14 C13 H142 239.6 239.9
O15 C14 C13 H131 195.1 296.9
O15 C14 C13 H132 73.6 176.8
C13 C14 O15 H141 120.0 120.0
C13 C14 O15 H142 240.4 240.1
C14 O15 C16 C17 300.8 58.7
C14 O15 C16 H161 60.9 178.6
C14 O15 C16 H162 182.0 298.8
H141 C14 O15 H142 120.4 120.1
N12 C17 C16 O15 36.9 303.1
C16 O15 C14 H141 303.1 181.4
C16 O15 C14 H142 182.8 61.3
O15 C16 C17 H171 276.9 183.2
O15 C16 C17 H172 155.2 63.1
C17 C16 O15 H161 240.0 240.1
C17 C16 O15 H162 118.9 119.9
H161 C16 O15 H162 238.9 239.8
N12 C17 C16 H171 120.0 119.9
N12 C17 C16 H172 241.7 240.0
O15 C16 C17 H161 120.0 119.9
O15 C16 C17 H162 241.1 240.1
H171 C17 C16 H172 121.7 120.1
H161 C16 C17 H162 121.1 120.2
N10 C19 N18 C20 185.5 180.0
N18 C19 C20 C21 333.1 360.0
N18 C19 C20 C26 163.0 179.7
N10 C19 C20 N18 174.6 180.0
C21 C20 C19 C26 170.1 180.2
C19 C20 C21 C22 184.3 180.0
C19 C20 C21 H21 4.3 360.0
C19 C20 C26 C24 175.6 179.7
C19 C20 C26 H26 355.6 359.9
C19 C20 C21 C26 190.0 179.8
C21 C20 C26 C24 5.6 359.5
C21 C20 C26 H26 185.6 179.7
C20 C21 C22 C23 2.8 0.0
C22 C21 C20 H21 180.0 180.0
C20 C21 C22 H22 182.7 180.0
C19 C20 C26 C21 170.0 180.2
C26 C20 C21 C22 354.3 0.2
C26 C20 C21 H21 174.3 180.2
C23 C24 C26 C20 357.6 0.6
O25 C24 C26 C20 177.6 180.2
C24 C26 C20 H26 180.0 179.8
C22 C21 C20 C26 354.3 0.2
C20 C21 C22 H21 180.0 180.0
C21 C22 C23 C24 0.4 0.0
C23 C22 C21 H22 180.0 180.0
C21 C22 C23 H23 180.4 180.0
C23 C22 C21 H21 182.8 180.1
C21 C22 C23 H22 180.0 180.0
C22 C23 C24 O25 179.5 180.0
C22 C23 C24 C26 359.6 359.7
C24 C23 C22 H23 180.0 180.1
C20 C26 C24 C23 357.6 0.6
C24 C23 C22 H22 180.4 180.1
C22 C23 C24 H23 180.0 179.9
O25 C24 C23 C26 179.9 180.4
C23 C24 O25 H25 68.8 89.9
C23 C24 C26 H26 177.6 180.4
C20 C26 C24 O25 177.6 180.2
C23 C24 O25 C26 180.1 179.6
O25 C24 C23 H23 359.5 0.1
O25 C24 C26 H26 357.6 360.0
C20 C26 C24 H26 180.0 180.2
C23 C24 C26 O25 179.9 180.4
C26 C24 C23 H23 179.5 179.7
C26 C24 O25 H25 248.8 270.3
H02 C02 N01 C06 179.9 179.9
N01 C02 H02 C03 180.0 180.1
H02 C02 C03 C04 180.1 180.0
H02 C02 C03 H03 0.1 0.1
C02 C03 H03 C04 180.0 179.9
H03 C03 C02 H02 0.1 0.1
H03 C03 C04 C05 179.9 180.0
H03 C03 C04 H04 359.9 359.9
C03 C04 H04 C05 180.0 180.1
H04 C04 C03 H03 359.9 359.9
H04 C04 C05 C06 180.0 180.1
H04 C04 C05 C09 359.5 0.2
H131 C13 N12 C17 147.6 61.3
N12 C13 H131 C14 237.1 240.2
N12 C13 H131 H132 118.6 120.1
H131 C13 C14 O15 195.1 296.9
C14 C13 H131 H132 241.5 239.9
H131 C13 C14 H141 315.1 56.9
H131 C13 C14 H142 75.6 177.0
H132 C13 N12 C17 269.2 181.5
N12 C13 H132 C14 121.9 119.8
N12 C13 H132 H131 240.9 239.9
H132 C13 C14 O15 73.6 176.8
C14 C13 H132 H131 119.0 120.1
H132 C13 C14 H141 193.6 296.7
H132 C13 C14 H142 314.0 56.9
N12 C17 H171 C16 236.9 240.2
N12 C17 H171 H172 118.4 120.1
C16 C17 H171 H172 241.5 239.9
H171 C17 C16 H161 156.9 63.3
H171 C17 C16 H162 35.8 303.1
N12 C17 H172 C16 122.1 119.9
N12 C17 H172 H171 241.1 240.0
C16 C17 H172 H171 119.0 120.1
H172 C17 C16 H161 35.2 303.2
H172 C17 C16 H162 274.1 183.0
C13 C14 H141 O15 239.2 240.2
H141 C14 C13 H131 315.1 56.9
H141 C14 C13 H132 193.6 296.7
C13 C14 H141 H142 119.6 120.1
H141 C14 O15 C16 303.1 181.4
O15 C14 H141 H142 240.4 239.9
C13 C14 H142 O15 120.5 119.8
H142 C14 C13 H131 75.6 177.0
H142 C14 C13 H132 314.0 56.9
C13 C14 H142 H141 240.2 239.9
H142 C14 O15 C16 182.8 61.3
O15 C14 H142 H141 119.7 120.1
O15 C16 H161 C17 237.8 240.2
O15 C16 H161 H162 118.9 120.1
H161 C16 C17 H171 156.9 63.3
H161 C16 C17 H172 35.2 303.2
C17 C16 H161 H162 241.1 239.8
O15 C16 H162 C17 121.5 119.7
O15 C16 H162 H161 240.7 239.9
H162 C16 C17 H171 35.8 303.1
H162 C16 C17 H172 274.1 183.0
C17 C16 H162 H161 119.3 120.2
H21 C21 C20 C26 174.3 180.2
C20 C21 H21 C22 180.0 180.0
H21 C21 C22 C23 182.8 180.1
H21 C21 C22 H22 2.7 0.0
C20 C26 H26 C24 180.0 179.8
C21 C22 H22 C23 180.0 180.0
H22 C22 C21 H21 2.7 0.0
H22 C22 C23 C24 180.4 180.1
H22 C22 C23 H23 0.4 0.0
C22 C23 H23 C24 180.0 180.1
H23 C23 C22 H22 0.4 0.0
H23 C23 C24 O25 359.5 0.1
H23 C23 C24 C26 179.5 179.7
H25 O25 C24 C26 248.8 270.3