PDB Chemical Component X6B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X6B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C07 |
N01 |
1.386 |
1.313 |
| N01 |
C08 |
1.316 |
1.302 |
| C08 |
N02 |
1.306 |
1.379 |
| N02 |
C09 |
1.306 |
1.398 |
| N02 |
HN02 |
1.000 |
0.970 |
| C10 |
N03 |
1.397 |
1.348 |
| N03 |
C16 |
1.375 |
1.399 |
| N03 |
HN03 |
1.000 |
0.970 |
| N04 |
C07 |
1.269 |
1.387 |
| N04 |
HN04 |
1.001 |
0.970 |
| N04 |
HN0A |
1.000 |
0.970 |
| S27 |
N05 |
1.681 |
1.656 |
| N05 |
HN05 |
1.000 |
0.969 |
| N05 |
HN0B |
1.000 |
0.970 |
| C07 |
C06 |
1.392 |
1.379 |
| C10 |
C06 |
1.383 |
1.409 |
| C06 |
S26 |
1.730 |
1.762 |
| C08 |
S26 |
1.735 |
1.708 |
| C09 |
C11 |
1.425 |
1.389 |
| C09 |
C15 |
1.448 |
1.390 |
| O22 |
C10 |
1.232 |
1.218 |
| C11 |
C12 |
1.416 |
1.381 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
C13 |
1.419 |
1.382 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.420 |
1.384 |
| C13 |
S27 |
1.773 |
1.762 |
| C15 |
C14 |
1.423 |
1.381 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| C21 |
C16 |
1.437 |
1.388 |
| C16 |
C17 |
1.424 |
1.389 |
| C17 |
C18 |
1.428 |
1.381 |
| C17 |
H17 |
1.079 |
1.081 |
| C19 |
C18 |
1.427 |
1.382 |
| C18 |
H18 |
1.080 |
1.080 |
| C20 |
C19 |
1.420 |
1.386 |
| C19 |
H19 |
1.080 |
1.080 |
| F25 |
C20 |
1.326 |
1.351 |
| C21 |
C20 |
1.422 |
1.383 |
| C21 |
H21 |
1.080 |
1.080 |
| O23 |
S27 |
1.428 |
1.422 |
| S27 |
O24 |
1.459 |
1.420 |
Bond Angles for X6B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C07 |
N01 |
C08 |
110.3 |
117.3 |
| N01 |
C08 |
N02 |
119.5 |
124.7 |
| N01 |
C08 |
S26 |
115.2 |
110.7 |
| C08 |
N02 |
C09 |
129.0 |
120.0 |
| C08 |
N02 |
HN02 |
115.5 |
120.0 |
| C09 |
N02 |
HN02 |
115.5 |
120.0 |
| N02 |
C09 |
C11 |
116.9 |
120.1 |
| N02 |
C09 |
C15 |
124.4 |
120.1 |
| C10 |
N03 |
C16 |
127.1 |
119.9 |
| C10 |
N03 |
HN03 |
116.4 |
120.0 |
| C16 |
N03 |
HN03 |
116.5 |
120.0 |
| N03 |
C16 |
C17 |
118.4 |
120.0 |
| C07 |
N04 |
HN04 |
109.5 |
120.0 |
| C07 |
N04 |
HN0A |
109.5 |
120.0 |
| N04 |
C07 |
C06 |
123.1 |
123.1 |
| HN04 |
N04 |
HN0A |
109.5 |
120.0 |
| S27 |
N05 |
HN05 |
109.5 |
119.9 |
| S27 |
N05 |
HN0B |
109.5 |
120.0 |
| HN05 |
N05 |
HN0B |
109.5 |
120.1 |
| C07 |
C06 |
S26 |
108.9 |
107.7 |
| C10 |
C06 |
S26 |
123.8 |
126.2 |
| C06 |
S26 |
C08 |
89.8 |
90.6 |
| C11 |
C09 |
C15 |
118.7 |
119.8 |
| C09 |
C11 |
C12 |
120.8 |
119.9 |
| C09 |
C11 |
H11 |
119.6 |
120.0 |
| C09 |
C15 |
C14 |
120.3 |
119.9 |
| C09 |
C15 |
H15 |
119.9 |
120.0 |
| C12 |
C11 |
H11 |
119.6 |
120.1 |
| C11 |
C12 |
C13 |
120.0 |
120.1 |
| C11 |
C12 |
H12 |
120.0 |
120.0 |
| C13 |
C12 |
H12 |
120.0 |
119.9 |
| C12 |
C13 |
S27 |
119.4 |
120.0 |
| C14 |
C13 |
S27 |
120.0 |
119.9 |
| C13 |
S27 |
O23 |
107.5 |
106.3 |
| C13 |
S27 |
O24 |
108.9 |
106.4 |
| C15 |
C14 |
H14 |
120.2 |
120.0 |
| C16 |
C17 |
C18 |
120.3 |
120.0 |
| C16 |
C17 |
H17 |
119.8 |
120.0 |
| C18 |
C17 |
H17 |
119.9 |
120.0 |
| C17 |
C18 |
H18 |
120.1 |
119.9 |
| C19 |
C18 |
H18 |
120.0 |
120.0 |
| C20 |
C19 |
H19 |
119.9 |
119.9 |
| O23 |
S27 |
O24 |
109.7 |
123.2 |
Torsion Angles for X6B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C07 |
N01 |
C08 |
N02 |
179.6 |
180.0 |
| C07 |
N01 |
C08 |
S26 |
359.9 |
0.0 |
| N01 |
C08 |
N02 |
C09 |
154.8 |
353.8 |
| N01 |
C08 |
N02 |
HN02 |
334.8 |
173.8 |
| C06 |
S26 |
C08 |
N01 |
0.1 |
360.0 |
| N01 |
C08 |
N02 |
S26 |
180.3 |
180.0 |
| C09 |
N02 |
C08 |
HN02 |
180.0 |
180.0 |
| C08 |
N02 |
C09 |
C11 |
175.0 |
148.5 |
| C08 |
N02 |
C09 |
C15 |
354.8 |
328.2 |
| C08 |
N02 |
C09 |
HN02 |
180.0 |
180.0 |
| C11 |
C09 |
N02 |
C15 |
180.2 |
180.3 |
| N02 |
C09 |
C11 |
C12 |
179.8 |
180.0 |
| N02 |
C09 |
C11 |
H11 |
359.8 |
359.9 |
| N02 |
C09 |
C15 |
C14 |
180.3 |
179.7 |
| N02 |
C09 |
C15 |
H15 |
0.3 |
0.0 |
| C08 |
N02 |
HN02 |
C09 |
180.0 |
180.0 |
| HN02 |
N02 |
C09 |
C11 |
354.9 |
328.5 |
| HN02 |
N02 |
C09 |
C15 |
174.7 |
148.2 |
| C16 |
N03 |
C10 |
HN03 |
180.0 |
180.0 |
| C10 |
N03 |
C16 |
C17 |
209.3 |
146.3 |
| C10 |
N03 |
C16 |
HN03 |
180.0 |
180.0 |
| N03 |
C16 |
C17 |
C18 |
180.7 |
180.0 |
| N03 |
C16 |
C17 |
H17 |
0.7 |
359.9 |
| C10 |
N03 |
HN03 |
C16 |
180.0 |
180.0 |
| HN03 |
N03 |
C16 |
C17 |
29.3 |
326.3 |
| N04 |
C07 |
N01 |
C08 |
180.0 |
180.0 |
| HN04 |
N04 |
C07 |
HN0A |
240.0 |
180.0 |
| N04 |
C07 |
C06 |
S26 |
180.1 |
180.0 |
| C07 |
N04 |
HN04 |
HN0A |
120.0 |
180.0 |
| HN04 |
N04 |
C07 |
C06 |
180.0 |
180.0 |
| C07 |
N04 |
HN0A |
HN04 |
240.0 |
180.0 |
| HN0A |
N04 |
C07 |
C06 |
300.0 |
0.0 |
| HN05 |
N05 |
S27 |
HN0B |
240.0 |
179.9 |
| S27 |
N05 |
HN05 |
HN0B |
120.0 |
180.1 |
| S27 |
N05 |
HN0B |
HN05 |
240.0 |
179.9 |
| C06 |
C07 |
N01 |
C08 |
0.0 |
360.0 |
| C06 |
C07 |
N04 |
HN04 |
180.0 |
180.0 |
| C06 |
C07 |
N04 |
HN0A |
300.0 |
0.0 |
| C10 |
C06 |
C07 |
S26 |
179.9 |
180.0 |
| C07 |
C06 |
S26 |
C08 |
359.9 |
360.0 |
| C06 |
C10 |
N03 |
C16 |
180.4 |
174.9 |
| C06 |
C10 |
N03 |
HN03 |
0.4 |
354.9 |
| C07 |
C06 |
C10 |
S26 |
180.2 |
180.0 |
| C10 |
C06 |
S26 |
C08 |
180.0 |
180.0 |
| N01 |
C08 |
S26 |
C06 |
0.1 |
360.0 |
| N01 |
C08 |
S26 |
N02 |
179.7 |
180.0 |
| S26 |
C08 |
N02 |
C09 |
334.5 |
173.8 |
| S26 |
C08 |
N02 |
HN02 |
154.6 |
353.8 |
| C11 |
C09 |
N02 |
HN02 |
354.9 |
328.5 |
| N02 |
C09 |
C11 |
C15 |
179.8 |
179.7 |
| C11 |
C09 |
C15 |
C14 |
0.1 |
359.4 |
| C11 |
C09 |
C15 |
H15 |
180.1 |
179.7 |
| C12 |
C11 |
C09 |
H11 |
180.0 |
180.1 |
| C09 |
C11 |
C12 |
C13 |
359.9 |
359.9 |
| C09 |
C11 |
C12 |
H12 |
179.9 |
180.0 |
| C15 |
C09 |
N02 |
HN02 |
174.7 |
148.2 |
| N02 |
C09 |
C15 |
C11 |
180.2 |
180.3 |
| C15 |
C09 |
C11 |
C12 |
360.0 |
0.3 |
| C15 |
C09 |
C11 |
H11 |
179.9 |
180.2 |
| C09 |
C15 |
C14 |
H14 |
180.0 |
180.3 |
| O22 |
C10 |
N03 |
HN03 |
180.0 |
174.9 |
| O22 |
C10 |
C06 |
S26 |
179.5 |
180.0 |
| C12 |
C11 |
C09 |
C15 |
360.0 |
0.3 |
| C09 |
C11 |
C12 |
H11 |
180.0 |
179.9 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
| C11 |
C12 |
C13 |
S27 |
180.5 |
180.0 |
| H11 |
C11 |
C09 |
C15 |
179.9 |
180.2 |
| C09 |
C11 |
H11 |
C12 |
180.0 |
180.1 |
| H11 |
C11 |
C12 |
C13 |
179.9 |
180.1 |
| H11 |
C11 |
C12 |
H12 |
359.9 |
0.1 |
| C13 |
C12 |
C11 |
H11 |
179.9 |
180.1 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
| C14 |
C13 |
C12 |
S27 |
179.7 |
180.0 |
| C12 |
C13 |
S27 |
O23 |
100.1 |
336.5 |
| C12 |
C13 |
S27 |
O24 |
341.3 |
203.6 |
| H12 |
C12 |
C11 |
H11 |
359.9 |
0.1 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
179.9 |
| H12 |
C12 |
C13 |
S27 |
0.5 |
360.0 |
| C09 |
C15 |
C14 |
C13 |
0.0 |
0.6 |
| C14 |
C13 |
C12 |
H12 |
180.3 |
180.0 |
| C12 |
C13 |
C14 |
S27 |
180.3 |
180.0 |
| C14 |
C13 |
S27 |
O23 |
280.4 |
156.4 |
| C14 |
C13 |
S27 |
O24 |
161.6 |
23.5 |
| C13 |
S27 |
N05 |
HN05 |
180.0 |
150.0 |
| C13 |
S27 |
N05 |
HN0B |
300.0 |
330.1 |
| S27 |
C13 |
C12 |
H12 |
0.5 |
360.0 |
| O23 |
S27 |
C13 |
O24 |
118.8 |
132.9 |
| C09 |
C15 |
C14 |
H15 |
180.0 |
180.3 |
| C15 |
C14 |
C13 |
S27 |
179.5 |
179.7 |
| H14 |
C14 |
C13 |
S27 |
359.5 |
360.0 |
| C09 |
C15 |
H15 |
C14 |
180.0 |
179.7 |
| H15 |
C15 |
C14 |
H14 |
0.0 |
0.0 |
| C21 |
C16 |
N03 |
HN03 |
210.0 |
146.0 |
| C21 |
C16 |
C17 |
H17 |
180.0 |
180.3 |
| C17 |
C16 |
N03 |
HN03 |
29.3 |
326.3 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H18 |
179.8 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
| H17 |
C17 |
C18 |
H18 |
359.9 |
0.0 |
| C19 |
C18 |
C17 |
H17 |
179.9 |
180.0 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
359.9 |
0.0 |
| C20 |
C19 |
C18 |
H18 |
180.1 |
180.0 |
| H19 |
C19 |
C18 |
H18 |
0.1 |
360.0 |
| F25 |
C20 |
C19 |
H19 |
360.0 |
0.0 |
| C21 |
C20 |
C19 |
H19 |
180.2 |
179.7 |
| O23 |
S27 |
N05 |
HN05 |
297.7 |
263.5 |
| O23 |
S27 |
N05 |
HN0B |
57.8 |
83.5 |
| C13 |
S27 |
O23 |
O24 |
241.7 |
237.1 |
| O24 |
S27 |
N05 |
HN05 |
58.9 |
36.4 |
| O24 |
S27 |
N05 |
HN0B |
178.9 |
216.5 |
| C13 |
S27 |
O24 |
O23 |
117.4 |
122.9 |