PDB Chemical Component X6A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X6A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C09 |
1.311 |
1.389 |
| N01 |
C14 |
1.492 |
1.464 |
| N01 |
HN01 |
1.000 |
0.970 |
| N02 |
C13 |
1.368 |
1.348 |
| N02 |
H102 |
1.000 |
0.969 |
| N02 |
H202 |
1.000 |
0.970 |
| N04 |
C17 |
1.364 |
1.324 |
| N05 |
O20 |
1.309 |
1.218 |
| N06 |
H106 |
1.000 |
0.970 |
| N06 |
H206 |
1.000 |
0.970 |
| C07 |
C12 |
1.427 |
1.377 |
| C07 |
H07 |
1.080 |
1.081 |
| C08 |
C07 |
1.436 |
1.397 |
| C08 |
C09 |
1.434 |
1.404 |
| C09 |
C10 |
1.422 |
1.388 |
| C10 |
C11 |
1.405 |
1.381 |
| C10 |
H10 |
1.081 |
1.080 |
| C11 |
CL22 |
1.701 |
1.737 |
| C12 |
N05 |
1.305 |
1.479 |
| C12 |
C11 |
1.445 |
1.387 |
| C13 |
C08 |
1.373 |
1.474 |
| C14 |
C15 |
1.505 |
1.507 |
| C14 |
H114 |
1.101 |
1.090 |
| C14 |
H214 |
1.100 |
1.090 |
| C15 |
C16 |
1.398 |
1.386 |
| C16 |
N03 |
1.360 |
1.323 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
N03 |
1.360 |
1.325 |
| C17 |
N06 |
1.268 |
1.384 |
| C18 |
C15 |
1.400 |
1.387 |
| C18 |
N04 |
1.373 |
1.323 |
| C18 |
H18 |
1.080 |
1.080 |
| O19 |
C13 |
1.217 |
1.216 |
| O21 |
N05 |
1.307 |
1.218 |
Bond Angles for X6A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C09 |
N01 |
C14 |
124.2 |
120.0 |
| C09 |
N01 |
HN01 |
104.8 |
119.9 |
| N01 |
C09 |
C08 |
120.7 |
120.2 |
| N01 |
C09 |
C10 |
120.7 |
120.2 |
| C14 |
N01 |
HN01 |
104.8 |
120.0 |
| N01 |
C14 |
C15 |
110.0 |
109.5 |
| N01 |
C14 |
H114 |
109.3 |
109.5 |
| N01 |
C14 |
H214 |
109.3 |
109.5 |
| C13 |
N02 |
H102 |
120.0 |
120.0 |
| C13 |
N02 |
H202 |
120.0 |
120.0 |
| N02 |
C13 |
C08 |
120.1 |
120.0 |
| H102 |
N02 |
H202 |
120.0 |
120.0 |
| N04 |
C17 |
N06 |
117.6 |
119.2 |
| C12 |
N05 |
O20 |
122.3 |
120.0 |
| H106 |
N06 |
H206 |
109.5 |
120.0 |
| C17 |
N06 |
H106 |
109.5 |
120.0 |
| C17 |
N06 |
H206 |
109.4 |
120.0 |
| C12 |
C07 |
H07 |
119.2 |
120.0 |
| C08 |
C07 |
C12 |
121.6 |
120.0 |
| C07 |
C12 |
C11 |
117.8 |
120.3 |
| C08 |
C07 |
H07 |
119.2 |
120.0 |
| C08 |
C09 |
C10 |
118.6 |
119.6 |
| C09 |
C10 |
C11 |
122.0 |
120.0 |
| C09 |
C10 |
H10 |
119.0 |
120.0 |
| C11 |
C10 |
H10 |
119.0 |
120.0 |
| C10 |
C11 |
CL22 |
116.4 |
119.8 |
| C12 |
C11 |
CL22 |
123.1 |
119.8 |
| C15 |
C14 |
H114 |
109.3 |
109.5 |
| C15 |
C14 |
H214 |
109.3 |
109.5 |
| C14 |
C15 |
C16 |
121.8 |
120.8 |
| H114 |
C14 |
H214 |
109.6 |
109.4 |
| C15 |
C16 |
H16 |
118.0 |
120.4 |
Torsion Angles for X6A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
N01 |
C09 |
HN01 |
240.0 |
180.3 |
| C09 |
N01 |
C14 |
C15 |
89.6 |
180.0 |
| C09 |
N01 |
C14 |
H114 |
209.7 |
300.0 |
| C09 |
N01 |
C14 |
H214 |
329.6 |
60.0 |
| C08 |
C09 |
N01 |
C10 |
180.4 |
180.1 |
| N01 |
C09 |
C10 |
C11 |
180.0 |
180.0 |
| N01 |
C09 |
C10 |
H10 |
0.0 |
0.1 |
| C09 |
N01 |
C14 |
HN01 |
120.0 |
179.7 |
| C14 |
N01 |
C09 |
C08 |
159.0 |
174.4 |
| C14 |
N01 |
C09 |
C10 |
338.6 |
354.3 |
| C15 |
C14 |
N01 |
H114 |
240.0 |
240.0 |
| C15 |
C14 |
N01 |
H214 |
120.0 |
120.0 |
| N01 |
C14 |
C15 |
C16 |
236.3 |
90.0 |
| H114 |
C14 |
N01 |
H214 |
240.0 |
240.0 |
| C09 |
N01 |
HN01 |
C14 |
227.8 |
180.3 |
| HN01 |
N01 |
C09 |
C08 |
279.0 |
354.1 |
| HN01 |
N01 |
C09 |
C10 |
98.5 |
174.0 |
| HN01 |
N01 |
C14 |
C15 |
329.6 |
0.4 |
| HN01 |
N01 |
C14 |
H114 |
89.7 |
120.3 |
| HN01 |
N01 |
C14 |
H214 |
209.6 |
240.3 |
| H102 |
N02 |
C13 |
H202 |
180.0 |
180.0 |
| C13 |
N02 |
H102 |
H202 |
180.0 |
180.0 |
| H102 |
N02 |
C13 |
C08 |
181.1 |
0.0 |
| C13 |
N02 |
H202 |
H102 |
180.0 |
180.0 |
| H202 |
N02 |
C13 |
C08 |
1.1 |
180.0 |
| N04 |
C17 |
N06 |
H106 |
0.0 |
360.0 |
| N04 |
C17 |
N06 |
H206 |
120.0 |
179.9 |
| C17 |
N06 |
H106 |
H206 |
120.0 |
180.0 |
| C17 |
N06 |
H206 |
H106 |
240.0 |
180.0 |
| C07 |
C12 |
N05 |
O20 |
181.0 |
359.9 |
| C08 |
C07 |
C12 |
H07 |
180.0 |
179.7 |
| C07 |
C12 |
C11 |
CL22 |
181.3 |
180.1 |
| C08 |
C07 |
H07 |
C12 |
180.0 |
180.3 |
| H07 |
C07 |
C12 |
C11 |
179.7 |
180.3 |
| N01 |
C09 |
C08 |
C07 |
180.3 |
180.0 |
| N02 |
C13 |
C08 |
C07 |
27.9 |
5.9 |
| C12 |
C07 |
C08 |
H07 |
180.0 |
180.3 |
| C08 |
C07 |
C12 |
C11 |
359.7 |
360.0 |
| C08 |
C09 |
N01 |
C14 |
159.0 |
174.4 |
| C08 |
C09 |
N01 |
HN01 |
279.0 |
354.1 |
| N01 |
C09 |
C08 |
C10 |
179.6 |
179.9 |
| N02 |
C13 |
C08 |
C09 |
207.7 |
185.9 |
| C09 |
C08 |
C07 |
C12 |
359.6 |
360.0 |
| C09 |
C08 |
C07 |
H07 |
179.6 |
179.7 |
| C08 |
C09 |
C10 |
C11 |
359.6 |
359.9 |
| C08 |
C09 |
C10 |
H10 |
179.6 |
180.0 |
| C10 |
C09 |
N01 |
C14 |
338.6 |
354.3 |
| C10 |
C09 |
N01 |
HN01 |
98.5 |
174.0 |
| N01 |
C09 |
C10 |
C08 |
180.4 |
180.1 |
| C11 |
C10 |
C09 |
H10 |
180.0 |
179.9 |
| C09 |
C10 |
C11 |
CL22 |
179.1 |
180.0 |
| C07 |
C12 |
C11 |
C10 |
0.7 |
360.0 |
| C09 |
C10 |
C11 |
H10 |
180.0 |
180.1 |
| C12 |
C11 |
C10 |
CL22 |
180.6 |
180.1 |
| C09 |
C10 |
H10 |
C11 |
180.0 |
179.9 |
| H10 |
C10 |
C11 |
CL22 |
359.1 |
359.9 |
| CL22 |
C11 |
C10 |
H10 |
359.1 |
359.9 |
| C11 |
C12 |
N05 |
O20 |
1.0 |
179.7 |
| C11 |
C12 |
C07 |
H07 |
179.7 |
180.3 |
| C12 |
C11 |
C10 |
H10 |
179.7 |
180.0 |
| C10 |
C11 |
C12 |
CL22 |
179.4 |
179.9 |
| C08 |
C13 |
N02 |
H102 |
181.1 |
0.0 |
| C08 |
C13 |
N02 |
H202 |
1.1 |
180.0 |
| C13 |
C08 |
C07 |
H07 |
359.3 |
359.7 |
| C15 |
C14 |
N01 |
HN01 |
329.6 |
0.4 |
| N01 |
C14 |
C15 |
H114 |
120.0 |
120.0 |
| N01 |
C14 |
C15 |
H214 |
240.0 |
239.9 |
| H114 |
C14 |
C15 |
H214 |
120.0 |
119.9 |
| C14 |
C15 |
C16 |
H16 |
359.4 |
0.1 |
| H114 |
C14 |
N01 |
HN01 |
89.7 |
120.3 |
| N01 |
C14 |
H114 |
C15 |
239.5 |
240.0 |
| N01 |
C14 |
H114 |
H214 |
119.8 |
120.1 |
| C15 |
C14 |
H114 |
H214 |
240.2 |
240.0 |
| H114 |
C14 |
C15 |
C16 |
116.3 |
330.0 |
| H214 |
C14 |
N01 |
HN01 |
209.6 |
240.3 |
| N01 |
C14 |
H214 |
C15 |
120.5 |
120.0 |
| N01 |
C14 |
H214 |
H114 |
240.2 |
240.0 |
| C15 |
C14 |
H214 |
H114 |
119.8 |
120.0 |
| H214 |
C14 |
C15 |
C16 |
356.3 |
210.0 |
| C16 |
C15 |
C14 |
H114 |
116.3 |
330.0 |
| C16 |
C15 |
C14 |
H214 |
356.3 |
210.0 |
| H106 |
N06 |
C17 |
H206 |
240.0 |
180.0 |
| C18 |
C15 |
C14 |
H114 |
295.8 |
150.0 |
| C18 |
C15 |
C14 |
H214 |
175.8 |
30.1 |
| C18 |
C15 |
C16 |
H16 |
179.9 |
180.0 |
| O19 |
C13 |
N02 |
H102 |
360.0 |
180.0 |
| O19 |
C13 |
N02 |
H202 |
180.0 |
360.0 |