PDB Chemical Component X69
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X69
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C07 |
1.312 |
1.389 |
| N01 |
C12 |
1.489 |
1.465 |
| N01 |
HN01 |
1.000 |
0.970 |
| N02 |
C11 |
1.368 |
1.347 |
| N02 |
H102 |
1.000 |
0.970 |
| N02 |
H202 |
1.000 |
0.969 |
| N03 |
C15 |
1.377 |
1.319 |
| N04 |
O20 |
1.309 |
1.218 |
| C05 |
C10 |
1.426 |
1.376 |
| C05 |
H05 |
1.081 |
1.081 |
| C06 |
C05 |
1.430 |
1.398 |
| C06 |
C07 |
1.440 |
1.406 |
| C07 |
C08 |
1.441 |
1.387 |
| C08 |
C09 |
1.429 |
1.387 |
| C08 |
H08 |
1.079 |
1.080 |
| C09 |
O22 |
1.369 |
1.357 |
| C10 |
N04 |
1.291 |
1.480 |
| C10 |
C09 |
1.439 |
1.392 |
| C11 |
C06 |
1.369 |
1.472 |
| C12 |
C13 |
1.516 |
1.506 |
| C12 |
H112 |
1.100 |
1.090 |
| C12 |
H212 |
1.099 |
1.091 |
| C13 |
C17 |
1.420 |
1.387 |
| C14 |
C13 |
1.409 |
1.383 |
| C14 |
N03 |
1.379 |
1.318 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C16 |
1.403 |
1.382 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.079 |
| C17 |
C16 |
1.418 |
1.386 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
H118 |
1.100 |
1.091 |
| C18 |
H218 |
1.100 |
1.090 |
| C18 |
H318 |
1.100 |
1.090 |
| O19 |
C11 |
1.211 |
1.217 |
| O21 |
N04 |
1.325 |
1.218 |
| O22 |
C18 |
1.408 |
1.429 |
Bond Angles for X69
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C07 |
N01 |
C12 |
124.6 |
120.0 |
| C07 |
N01 |
HN01 |
104.7 |
120.0 |
| N01 |
C07 |
C06 |
120.0 |
120.1 |
| N01 |
C07 |
C08 |
121.6 |
120.1 |
| C12 |
N01 |
HN01 |
104.7 |
120.0 |
| N01 |
C12 |
C13 |
111.0 |
109.5 |
| N01 |
C12 |
H112 |
109.0 |
109.5 |
| N01 |
C12 |
H212 |
108.9 |
109.4 |
| C11 |
N02 |
H102 |
120.0 |
120.0 |
| C11 |
N02 |
H202 |
120.0 |
120.0 |
| N02 |
C11 |
C06 |
119.5 |
120.0 |
| H102 |
N02 |
H202 |
120.0 |
120.0 |
| C14 |
N03 |
C15 |
117.9 |
121.8 |
| N03 |
C15 |
C16 |
123.2 |
120.7 |
| N03 |
C15 |
H15 |
118.4 |
119.6 |
| C10 |
N04 |
O20 |
120.8 |
120.0 |
| C10 |
C05 |
H05 |
119.1 |
120.0 |
| C06 |
C05 |
C10 |
121.7 |
120.0 |
| C05 |
C10 |
C09 |
118.8 |
120.3 |
| C06 |
C05 |
H05 |
119.1 |
120.0 |
| C06 |
C07 |
C08 |
118.4 |
119.7 |
| C07 |
C08 |
C09 |
121.5 |
120.0 |
| C07 |
C08 |
H08 |
119.3 |
120.0 |
| C09 |
C08 |
H08 |
119.3 |
120.1 |
| C08 |
C09 |
O22 |
119.7 |
119.8 |
| C10 |
C09 |
O22 |
120.5 |
119.8 |
| C09 |
O22 |
C18 |
121.9 |
117.0 |
| C13 |
C12 |
H112 |
109.0 |
109.5 |
| C13 |
C12 |
H212 |
109.0 |
109.5 |
| C12 |
C13 |
C17 |
120.8 |
120.4 |
| H112 |
C12 |
H212 |
110.0 |
109.5 |
| C14 |
C13 |
C17 |
117.4 |
119.1 |
| C13 |
C17 |
C16 |
120.7 |
118.4 |
| C13 |
C17 |
H17 |
119.6 |
120.8 |
| C16 |
C15 |
H15 |
118.4 |
119.6 |
| C15 |
C16 |
H16 |
121.2 |
120.4 |
| C17 |
C16 |
H16 |
121.2 |
120.4 |
| H118 |
C18 |
H218 |
109.4 |
109.5 |
| H118 |
C18 |
H318 |
109.5 |
109.4 |
| O22 |
C18 |
H118 |
109.5 |
109.4 |
| H218 |
C18 |
H318 |
109.5 |
109.5 |
| O22 |
C18 |
H218 |
109.5 |
109.5 |
| O22 |
C18 |
H318 |
109.5 |
109.4 |
Torsion Angles for X69
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
N01 |
C07 |
HN01 |
240.0 |
180.3 |
| C07 |
N01 |
C12 |
C13 |
93.1 |
180.0 |
| C07 |
N01 |
C12 |
H112 |
213.1 |
300.0 |
| C07 |
N01 |
C12 |
H212 |
333.1 |
60.0 |
| C06 |
C07 |
N01 |
C08 |
180.1 |
180.0 |
| N01 |
C07 |
C08 |
C09 |
180.1 |
180.0 |
| N01 |
C07 |
C08 |
H08 |
0.1 |
360.0 |
| C07 |
N01 |
C12 |
HN01 |
120.0 |
179.7 |
| C12 |
N01 |
C07 |
C06 |
162.7 |
174.4 |
| C12 |
N01 |
C07 |
C08 |
342.6 |
354.4 |
| C13 |
C12 |
N01 |
H112 |
240.0 |
240.0 |
| C13 |
C12 |
N01 |
H212 |
120.0 |
120.0 |
| N01 |
C12 |
C13 |
C17 |
233.4 |
90.0 |
| H112 |
C12 |
N01 |
H212 |
240.0 |
240.0 |
| C07 |
N01 |
HN01 |
C12 |
227.5 |
180.3 |
| HN01 |
N01 |
C07 |
C06 |
282.7 |
354.0 |
| HN01 |
N01 |
C07 |
C08 |
102.6 |
174.0 |
| HN01 |
N01 |
C12 |
C13 |
333.1 |
0.3 |
| HN01 |
N01 |
C12 |
H112 |
93.1 |
120.3 |
| HN01 |
N01 |
C12 |
H212 |
213.1 |
240.3 |
| H102 |
N02 |
C11 |
H202 |
180.0 |
180.0 |
| C11 |
N02 |
H102 |
H202 |
180.0 |
180.0 |
| H102 |
N02 |
C11 |
C06 |
179.6 |
360.0 |
| C11 |
N02 |
H202 |
H102 |
180.0 |
180.0 |
| H202 |
N02 |
C11 |
C06 |
359.6 |
180.0 |
| C16 |
C15 |
N03 |
H15 |
180.0 |
180.1 |
| N03 |
C15 |
C16 |
H16 |
179.9 |
180.0 |
| C05 |
C10 |
N04 |
O20 |
202.5 |
0.1 |
| C06 |
C05 |
C10 |
H05 |
180.0 |
179.8 |
| C05 |
C10 |
C09 |
O22 |
179.9 |
179.9 |
| C06 |
C05 |
H05 |
C10 |
180.0 |
180.2 |
| H05 |
C05 |
C10 |
C09 |
180.0 |
180.3 |
| N01 |
C07 |
C06 |
C05 |
180.0 |
180.0 |
| N02 |
C11 |
C06 |
C05 |
26.7 |
5.9 |
| C10 |
C05 |
C06 |
H05 |
180.0 |
180.2 |
| C06 |
C05 |
C10 |
C09 |
360.0 |
0.0 |
| C06 |
C07 |
N01 |
C12 |
162.7 |
174.4 |
| C06 |
C07 |
N01 |
HN01 |
282.7 |
354.0 |
| N01 |
C07 |
C06 |
C08 |
179.9 |
180.0 |
| N02 |
C11 |
C06 |
C07 |
206.9 |
185.9 |
| C07 |
C06 |
C05 |
C10 |
359.9 |
360.0 |
| C07 |
C06 |
C05 |
H05 |
180.0 |
179.7 |
| C06 |
C07 |
C08 |
C09 |
0.0 |
0.0 |
| C06 |
C07 |
C08 |
H08 |
180.1 |
180.0 |
| C08 |
C07 |
N01 |
C12 |
342.6 |
354.4 |
| C08 |
C07 |
N01 |
HN01 |
102.6 |
174.0 |
| N01 |
C07 |
C08 |
C06 |
180.1 |
180.0 |
| C09 |
C08 |
C07 |
H08 |
180.0 |
180.1 |
| C07 |
C08 |
C09 |
O22 |
180.1 |
180.0 |
| C05 |
C10 |
C09 |
C08 |
0.1 |
0.0 |
| C07 |
C08 |
C09 |
H08 |
180.0 |
179.9 |
| C10 |
C09 |
C08 |
O22 |
179.7 |
179.9 |
| C08 |
C09 |
O22 |
C18 |
283.7 |
359.9 |
| C07 |
C08 |
H08 |
C09 |
180.0 |
180.1 |
| H08 |
C08 |
C09 |
O22 |
0.1 |
0.1 |
| O22 |
C09 |
C08 |
H08 |
0.1 |
0.1 |
| C09 |
O22 |
C18 |
H118 |
180.0 |
180.0 |
| C09 |
O22 |
C18 |
H218 |
300.0 |
300.0 |
| C09 |
O22 |
C18 |
H318 |
60.0 |
60.1 |
| C09 |
C10 |
N04 |
O20 |
22.4 |
179.7 |
| C09 |
C10 |
C05 |
H05 |
180.0 |
180.3 |
| C10 |
C09 |
C08 |
H08 |
179.9 |
180.0 |
| C08 |
C09 |
C10 |
O22 |
180.3 |
180.1 |
| C10 |
C09 |
O22 |
C18 |
104.0 |
180.0 |
| C06 |
C11 |
N02 |
H102 |
179.6 |
360.0 |
| C06 |
C11 |
N02 |
H202 |
359.6 |
180.0 |
| C11 |
C06 |
C05 |
H05 |
0.1 |
359.7 |
| C13 |
C12 |
N01 |
HN01 |
333.1 |
0.3 |
| N01 |
C12 |
C13 |
H112 |
120.0 |
120.0 |
| N01 |
C12 |
C13 |
H212 |
240.0 |
240.0 |
| H112 |
C12 |
C13 |
H212 |
120.0 |
120.0 |
| C14 |
C13 |
C12 |
C17 |
179.7 |
180.0 |
| C12 |
C13 |
C17 |
C16 |
179.7 |
180.0 |
| C12 |
C13 |
C17 |
H17 |
359.7 |
359.9 |
| H112 |
C12 |
N01 |
HN01 |
93.1 |
120.3 |
| N01 |
C12 |
H112 |
C13 |
238.7 |
240.0 |
| N01 |
C12 |
H112 |
H212 |
119.4 |
119.9 |
| C13 |
C12 |
H112 |
H212 |
240.6 |
239.9 |
| H112 |
C12 |
C13 |
C17 |
113.4 |
330.0 |
| H212 |
C12 |
N01 |
HN01 |
213.1 |
240.3 |
| N01 |
C12 |
H212 |
C13 |
121.3 |
120.0 |
| N01 |
C12 |
H212 |
H112 |
240.6 |
240.0 |
| C13 |
C12 |
H212 |
H112 |
119.4 |
120.1 |
| H212 |
C12 |
C13 |
C17 |
353.4 |
210.0 |
| C17 |
C13 |
C12 |
H112 |
113.4 |
330.0 |
| C17 |
C13 |
C12 |
H212 |
353.4 |
210.0 |
| C13 |
C17 |
C16 |
H16 |
180.1 |
180.0 |
| C13 |
C14 |
N03 |
C15 |
360.0 |
360.0 |
| C14 |
C13 |
C12 |
H112 |
293.1 |
150.0 |
| C14 |
C13 |
C12 |
H212 |
173.2 |
30.0 |
| C12 |
C13 |
C14 |
C17 |
180.3 |
180.0 |
| C14 |
C13 |
C17 |
C16 |
360.0 |
0.0 |
| C14 |
C13 |
C17 |
H17 |
180.0 |
180.0 |
| C14 |
N03 |
C15 |
C16 |
0.0 |
0.1 |
| C14 |
N03 |
C15 |
H15 |
180.1 |
180.0 |
| H14 |
C14 |
N03 |
C15 |
180.0 |
180.0 |
| H14 |
C14 |
C13 |
C17 |
180.0 |
180.0 |
| N03 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
| C13 |
C17 |
C16 |
C15 |
0.0 |
0.0 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
| N03 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
| H15 |
C15 |
C16 |
H16 |
359.9 |
0.0 |
| H16 |
C16 |
C15 |
H15 |
359.9 |
0.0 |
| C13 |
C17 |
C16 |
H17 |
180.0 |
179.9 |
| C17 |
C16 |
C15 |
H15 |
179.9 |
180.0 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| C13 |
C17 |
H17 |
C16 |
180.0 |
180.1 |
| H17 |
C17 |
C16 |
H16 |
0.0 |
0.1 |
| H218 |
C18 |
H118 |
H318 |
120.0 |
120.0 |
| O22 |
C18 |
H118 |
H218 |
120.0 |
120.1 |
| O22 |
C18 |
H118 |
H318 |
240.0 |
240.1 |
| H118 |
C18 |
H218 |
H318 |
240.1 |
240.0 |
| O22 |
C18 |
H218 |
H118 |
240.0 |
240.0 |
| O22 |
C18 |
H218 |
H318 |
120.0 |
120.0 |
| H118 |
C18 |
H318 |
H218 |
119.9 |
120.0 |
| O22 |
C18 |
H318 |
H118 |
120.1 |
119.9 |
| O22 |
C18 |
H318 |
H218 |
240.0 |
239.9 |
| O19 |
C11 |
N02 |
H102 |
0.0 |
180.1 |
| O19 |
C11 |
N02 |
H202 |
180.0 |
0.0 |
| H118 |
C18 |
O22 |
H218 |
240.0 |
240.0 |
| H118 |
C18 |
O22 |
H318 |
120.0 |
119.9 |
| H218 |
C18 |
O22 |
H318 |
240.0 |
239.9 |