PDB Chemical Component X65
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X65
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.412 |
1.380 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
N8 |
1.332 |
1.481 |
| C3 |
C2 |
1.438 |
1.385 |
| C4 |
C3 |
1.427 |
1.377 |
| C4 |
H4 |
1.079 |
1.080 |
| C5 |
C4 |
1.438 |
1.397 |
| C5 |
C6 |
1.471 |
1.404 |
| C6 |
C1 |
1.463 |
1.389 |
| N7 |
C6 |
1.336 |
1.389 |
| N7 |
C14 |
1.455 |
1.464 |
| N7 |
HN7 |
1.000 |
0.970 |
| N8 |
O10 |
1.221 |
1.217 |
| O9 |
N8 |
1.340 |
1.218 |
| C11 |
C5 |
1.384 |
1.474 |
| N12 |
C11 |
1.359 |
1.349 |
| N12 |
H112 |
0.999 |
0.970 |
| N12 |
H212 |
1.000 |
0.970 |
| O13 |
C11 |
1.342 |
1.216 |
| C14 |
C18 |
1.506 |
1.507 |
| C14 |
H114 |
1.100 |
1.090 |
| C14 |
H214 |
1.100 |
1.090 |
| C15 |
C16 |
1.420 |
1.382 |
| C15 |
S21 |
1.742 |
1.761 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
C16 |
1.410 |
1.382 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
C17 |
1.420 |
1.383 |
| C19 |
C18 |
1.442 |
1.382 |
| C19 |
C20 |
1.421 |
1.383 |
| C19 |
H19 |
1.080 |
1.081 |
| C20 |
C15 |
1.426 |
1.383 |
| C20 |
H20 |
1.080 |
1.080 |
| S21 |
N24 |
1.496 |
1.656 |
| S21 |
O23 |
1.494 |
1.421 |
| O22 |
S21 |
1.632 |
1.421 |
| N24 |
H124 |
1.000 |
0.970 |
| N24 |
H224 |
1.000 |
0.970 |
Bond Angles for X65
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
119.2 |
120.0 |
| C1 |
C2 |
H2 |
119.5 |
119.7 |
| C6 |
C1 |
H1 |
119.2 |
120.0 |
| C3 |
C2 |
H2 |
119.5 |
119.8 |
| C4 |
C3 |
N8 |
120.1 |
119.9 |
| C3 |
N8 |
O10 |
121.5 |
120.0 |
| C5 |
C4 |
H4 |
118.5 |
120.1 |
| C14 |
N7 |
HN7 |
103.9 |
120.0 |
| N7 |
C14 |
C18 |
113.9 |
109.5 |
| N7 |
C14 |
H114 |
108.0 |
109.5 |
| N7 |
C14 |
H214 |
108.1 |
109.5 |
| O9 |
N8 |
O10 |
117.2 |
120.1 |
| H112 |
N12 |
H212 |
120.0 |
120.0 |
| C18 |
C14 |
H114 |
108.0 |
109.4 |
| C18 |
C14 |
H214 |
108.0 |
109.5 |
| C14 |
C18 |
C17 |
118.6 |
120.0 |
| H114 |
C14 |
H214 |
110.9 |
109.5 |
| C16 |
C15 |
S21 |
119.2 |
120.0 |
| C15 |
C16 |
H16 |
120.0 |
120.0 |
| C20 |
C15 |
S21 |
120.2 |
120.0 |
| C15 |
S21 |
N24 |
113.9 |
107.2 |
| C15 |
S21 |
O23 |
112.2 |
106.4 |
| C17 |
C16 |
H16 |
119.9 |
120.0 |
| C18 |
C17 |
H17 |
119.9 |
119.9 |
| C20 |
C19 |
H19 |
120.1 |
120.0 |
| C19 |
C20 |
H20 |
120.2 |
120.0 |
| O23 |
S21 |
N24 |
106.1 |
106.4 |
| O22 |
S21 |
N24 |
103.5 |
106.4 |
| S21 |
N24 |
H124 |
109.5 |
120.0 |
| S21 |
N24 |
H224 |
109.5 |
120.0 |
| O22 |
S21 |
O23 |
108.3 |
123.1 |
| H124 |
N24 |
H224 |
109.4 |
120.0 |
Torsion Angles for X65
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| H1 |
C1 |
C2 |
H2 |
359.5 |
0.0 |
| H2 |
C2 |
C1 |
H1 |
359.5 |
0.0 |
| N8 |
C3 |
C2 |
H2 |
359.8 |
360.0 |
| O9 |
N8 |
C3 |
O10 |
180.1 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
179.5 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
179.9 |
180.0 |
| C4 |
C3 |
N8 |
O10 |
180.0 |
180.0 |
| H4 |
C4 |
C3 |
N8 |
360.0 |
360.0 |
| C5 |
C4 |
C3 |
N8 |
180.0 |
180.0 |
| C5 |
C6 |
C1 |
H1 |
181.2 |
179.7 |
| C6 |
C5 |
C4 |
H4 |
180.9 |
179.8 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C6 |
C1 |
C2 |
H2 |
179.5 |
180.3 |
| N7 |
C6 |
C1 |
H1 |
355.7 |
0.2 |
| C18 |
C14 |
N7 |
H114 |
240.0 |
240.1 |
| C18 |
C14 |
N7 |
H214 |
120.0 |
120.0 |
| N7 |
C14 |
C18 |
C17 |
221.4 |
90.0 |
| H114 |
C14 |
N7 |
H214 |
240.0 |
240.0 |
| HN7 |
N7 |
C14 |
C18 |
321.3 |
0.1 |
| HN7 |
N7 |
C14 |
H114 |
81.3 |
120.0 |
| HN7 |
N7 |
C14 |
H214 |
201.3 |
240.0 |
| C3 |
N8 |
O9 |
O10 |
179.9 |
180.0 |
| C11 |
C5 |
C4 |
H4 |
5.1 |
0.1 |
| C18 |
C14 |
N7 |
HN7 |
321.3 |
0.1 |
| N7 |
C14 |
C18 |
H114 |
120.0 |
120.0 |
| N7 |
C14 |
C18 |
H214 |
240.0 |
239.9 |
| H114 |
C14 |
C18 |
H214 |
120.0 |
120.0 |
| C14 |
C18 |
C17 |
H17 |
0.0 |
360.0 |
| H114 |
C14 |
N7 |
HN7 |
81.3 |
120.0 |
| N7 |
C14 |
H114 |
C18 |
236.4 |
240.0 |
| N7 |
C14 |
H114 |
H214 |
118.2 |
120.1 |
| C18 |
C14 |
H114 |
H214 |
241.8 |
240.0 |
| H114 |
C14 |
C18 |
C17 |
101.4 |
330.0 |
| H214 |
C14 |
N7 |
HN7 |
201.3 |
240.0 |
| N7 |
C14 |
H214 |
C18 |
123.6 |
120.0 |
| N7 |
C14 |
H214 |
H114 |
241.8 |
240.0 |
| C18 |
C14 |
H214 |
H114 |
118.2 |
119.9 |
| H214 |
C14 |
C18 |
C17 |
341.4 |
210.0 |
| C20 |
C15 |
C16 |
S21 |
180.0 |
180.3 |
| C16 |
C15 |
S21 |
N24 |
119.8 |
90.0 |
| C16 |
C15 |
S21 |
O23 |
359.3 |
336.5 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
179.9 |
| S21 |
C15 |
C16 |
H16 |
359.8 |
0.0 |
| O23 |
S21 |
C15 |
N24 |
239.5 |
246.5 |
| O22 |
S21 |
C15 |
N24 |
117.2 |
113.6 |
| C15 |
S21 |
N24 |
H124 |
180.0 |
0.1 |
| C15 |
S21 |
N24 |
H224 |
300.0 |
180.0 |
| O22 |
S21 |
C15 |
O23 |
237.7 |
227.1 |
| H16 |
C16 |
C15 |
S21 |
359.8 |
0.0 |
| C14 |
C18 |
C17 |
C16 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
S21 |
179.9 |
180.0 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.1 |
| H17 |
C17 |
C16 |
H16 |
0.1 |
360.0 |
| C17 |
C18 |
C14 |
H114 |
101.4 |
330.0 |
| C17 |
C18 |
C14 |
H214 |
341.4 |
210.0 |
| C18 |
C17 |
C16 |
H16 |
180.1 |
179.9 |
| C19 |
C18 |
C14 |
H114 |
281.4 |
150.0 |
| C19 |
C18 |
C14 |
H214 |
161.4 |
30.0 |
| C19 |
C18 |
C17 |
H17 |
180.0 |
180.0 |
| C19 |
C20 |
C15 |
S21 |
180.2 |
179.7 |
| H19 |
C19 |
C20 |
H20 |
359.8 |
359.7 |
| C16 |
C15 |
C20 |
S21 |
180.0 |
179.7 |
| C20 |
C15 |
C16 |
H16 |
179.8 |
180.4 |
| C20 |
C15 |
S21 |
N24 |
299.8 |
269.7 |
| C20 |
C15 |
S21 |
O23 |
179.4 |
156.1 |
| H20 |
C20 |
C15 |
S21 |
0.2 |
0.3 |
| H20 |
C20 |
C19 |
H19 |
359.8 |
359.7 |
| C15 |
S21 |
N24 |
O23 |
236.1 |
246.4 |
| O22 |
S21 |
N24 |
O23 |
113.9 |
132.8 |
| H124 |
N24 |
S21 |
H224 |
240.0 |
180.1 |
| C15 |
S21 |
O23 |
N24 |
124.9 |
114.1 |
| O22 |
S21 |
O23 |
N24 |
249.4 |
237.1 |
| O23 |
S21 |
N24 |
H124 |
303.9 |
113.6 |
| O23 |
S21 |
N24 |
H224 |
63.9 |
293.6 |
| C15 |
S21 |
O22 |
N24 |
236.8 |
245.9 |
| C15 |
S21 |
O22 |
O23 |
124.5 |
123.0 |
| O23 |
S21 |
O22 |
N24 |
112.3 |
122.9 |
| O22 |
S21 |
N24 |
H124 |
57.8 |
246.5 |
| O22 |
S21 |
N24 |
H224 |
177.8 |
66.4 |
| S21 |
N24 |
H124 |
H224 |
120.0 |
179.9 |
| S21 |
N24 |
H224 |
H124 |
240.0 |
180.1 |