PDB Chemical Component X63
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X63
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
HN01 |
0.999 |
0.969 |
| N02 |
C14 |
1.372 |
1.348 |
| N02 |
H102 |
1.000 |
0.970 |
| N02 |
H202 |
1.000 |
0.970 |
| N03 |
C18 |
1.369 |
1.325 |
| N05 |
C12 |
1.301 |
1.391 |
| N05 |
HN05 |
1.000 |
0.970 |
| N06 |
H106 |
1.000 |
0.970 |
| N06 |
H206 |
1.000 |
0.970 |
| N07 |
O25 |
1.312 |
1.218 |
| N07 |
C13 |
1.288 |
1.480 |
| C08 |
C09 |
1.440 |
1.399 |
| C08 |
H08 |
1.080 |
1.080 |
| C09 |
C14 |
1.401 |
1.471 |
| C10 |
C09 |
1.453 |
1.406 |
| C10 |
N01 |
1.314 |
1.389 |
| C11 |
C10 |
1.439 |
1.386 |
| C11 |
H11 |
1.081 |
1.080 |
| C12 |
C13 |
1.431 |
1.394 |
| C12 |
C11 |
1.414 |
1.389 |
| C13 |
C08 |
1.444 |
1.365 |
| C14 |
O22 |
1.222 |
1.216 |
| C15 |
N01 |
1.507 |
1.466 |
| C15 |
C16 |
1.515 |
1.507 |
| C15 |
H115 |
1.100 |
1.090 |
| C15 |
H215 |
1.100 |
1.090 |
| C16 |
C19 |
1.402 |
1.386 |
| C17 |
C16 |
1.402 |
1.386 |
| C17 |
N03 |
1.369 |
1.323 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
N04 |
1.365 |
1.325 |
| C18 |
N06 |
1.276 |
1.384 |
| C19 |
N04 |
1.369 |
1.323 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
C21 |
1.521 |
1.530 |
| C20 |
N05 |
1.481 |
1.465 |
| C20 |
H120 |
1.100 |
1.090 |
| C20 |
H220 |
1.100 |
1.090 |
| C21 |
H121 |
1.100 |
1.090 |
| C21 |
H221 |
1.100 |
1.090 |
| O23 |
C21 |
1.408 |
1.429 |
| O23 |
HO23 |
0.950 |
0.966 |
| O24 |
N07 |
1.316 |
1.218 |
Bond Angles for X63
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
N01 |
HN01 |
104.6 |
120.0 |
| C15 |
N01 |
HN01 |
104.6 |
120.0 |
| C14 |
N02 |
H102 |
120.0 |
120.0 |
| C14 |
N02 |
H202 |
120.0 |
120.0 |
| N02 |
C14 |
C09 |
120.2 |
120.0 |
| N02 |
C14 |
O22 |
118.1 |
120.1 |
| H102 |
N02 |
H202 |
119.9 |
120.0 |
| C17 |
N03 |
C18 |
115.8 |
120.7 |
| N03 |
C18 |
N04 |
125.2 |
121.6 |
| N03 |
C18 |
N06 |
117.4 |
119.3 |
| C12 |
N05 |
HN05 |
105.4 |
120.0 |
| N05 |
C12 |
C13 |
120.4 |
119.9 |
| N05 |
C12 |
C11 |
119.9 |
119.8 |
| C20 |
N05 |
HN05 |
105.4 |
120.0 |
| H106 |
N06 |
H206 |
109.5 |
120.0 |
| C18 |
N06 |
H106 |
109.5 |
119.9 |
| C18 |
N06 |
H206 |
109.5 |
120.0 |
| C13 |
N07 |
O25 |
120.6 |
120.0 |
| O24 |
N07 |
O25 |
118.1 |
120.0 |
| N07 |
C13 |
C12 |
120.7 |
119.8 |
| N07 |
C13 |
C08 |
120.2 |
119.8 |
| C09 |
C08 |
H08 |
119.2 |
120.0 |
| C08 |
C09 |
C14 |
119.1 |
120.1 |
| C13 |
C08 |
H08 |
119.3 |
119.9 |
| C10 |
C09 |
C14 |
122.1 |
120.2 |
| C09 |
C14 |
O22 |
121.7 |
120.0 |
| C12 |
C11 |
H11 |
118.8 |
120.1 |
| C16 |
C15 |
H115 |
109.1 |
109.5 |
| C16 |
C15 |
H215 |
109.1 |
109.5 |
| C15 |
C16 |
C19 |
123.0 |
120.7 |
| H115 |
C15 |
H215 |
109.8 |
109.5 |
| C17 |
C16 |
C19 |
115.0 |
118.6 |
| C16 |
C19 |
H19 |
118.2 |
120.4 |
| C21 |
C20 |
H120 |
109.6 |
109.5 |
| C21 |
C20 |
H220 |
109.6 |
109.5 |
| C20 |
C21 |
H121 |
109.5 |
109.5 |
| C20 |
C21 |
H221 |
109.5 |
109.5 |
| H120 |
C20 |
H220 |
109.3 |
109.5 |
| H121 |
C21 |
H221 |
109.4 |
109.5 |
| O23 |
C21 |
H121 |
109.5 |
109.5 |
| O23 |
C21 |
H221 |
109.5 |
109.4 |
Torsion Angles for X63
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H102 |
N02 |
C14 |
H202 |
180.0 |
180.0 |
| C08 |
C09 |
C14 |
N02 |
27.9 |
353.2 |
| C10 |
C09 |
C14 |
N02 |
208.1 |
173.2 |
| C09 |
C14 |
N02 |
O22 |
179.9 |
180.0 |
| C14 |
N02 |
H102 |
H202 |
180.0 |
180.0 |
| H102 |
N02 |
C14 |
C09 |
179.9 |
0.0 |
| H102 |
N02 |
C14 |
O22 |
360.0 |
180.0 |
| C14 |
N02 |
H202 |
H102 |
180.0 |
180.0 |
| H202 |
N02 |
C14 |
C09 |
359.8 |
180.0 |
| H202 |
N02 |
C14 |
O22 |
180.0 |
0.0 |
| N03 |
C18 |
N06 |
H106 |
360.0 |
0.0 |
| N03 |
C18 |
N06 |
H206 |
120.0 |
180.0 |
| C20 |
N05 |
C12 |
HN05 |
240.0 |
180.0 |
| N07 |
C13 |
C12 |
N05 |
360.0 |
360.0 |
| N05 |
C12 |
C11 |
H11 |
359.8 |
0.3 |
| HN05 |
N05 |
C12 |
C13 |
339.1 |
3.2 |
| HN05 |
N05 |
C12 |
C11 |
159.2 |
182.6 |
| C18 |
N06 |
H106 |
H206 |
120.0 |
180.0 |
| C18 |
N06 |
H206 |
H106 |
239.9 |
180.0 |
| O25 |
N07 |
C13 |
C12 |
193.8 |
321.2 |
| O25 |
N07 |
C13 |
C08 |
13.8 |
141.2 |
| N05 |
C12 |
C13 |
N07 |
360.0 |
360.0 |
| O24 |
N07 |
C13 |
O25 |
180.0 |
179.9 |
| N07 |
C13 |
C08 |
H08 |
0.2 |
359.8 |
| N02 |
C14 |
C09 |
C08 |
27.9 |
353.2 |
| N07 |
C13 |
C08 |
C09 |
180.1 |
179.5 |
| C13 |
C08 |
C09 |
H08 |
180.0 |
180.3 |
| C10 |
C09 |
C08 |
C14 |
179.8 |
180.0 |
| C08 |
C09 |
C14 |
O22 |
207.7 |
173.2 |
| H08 |
C08 |
C09 |
C14 |
0.3 |
360.0 |
| C09 |
C14 |
N02 |
H102 |
179.9 |
0.0 |
| C09 |
C14 |
N02 |
H202 |
359.8 |
180.0 |
| N02 |
C14 |
C09 |
O22 |
180.1 |
180.0 |
| C14 |
C09 |
C08 |
H08 |
0.3 |
360.0 |
| C09 |
C10 |
N01 |
HN01 |
295.2 |
352.2 |
| N02 |
C14 |
C09 |
C10 |
208.1 |
173.2 |
| C10 |
C09 |
C08 |
H08 |
180.1 |
180.0 |
| C08 |
C09 |
C10 |
C14 |
180.2 |
180.0 |
| C10 |
C09 |
C14 |
O22 |
28.0 |
353.2 |
| C15 |
N01 |
C10 |
HN01 |
240.0 |
180.2 |
| C11 |
C10 |
N01 |
HN01 |
115.3 |
172.1 |
| N05 |
C12 |
C11 |
C10 |
179.8 |
180.3 |
| C11 |
C10 |
C09 |
C14 |
179.5 |
180.1 |
| C13 |
C12 |
N05 |
HN05 |
339.1 |
3.2 |
| N05 |
C12 |
C13 |
C11 |
180.2 |
179.4 |
| C12 |
C13 |
N07 |
O25 |
193.8 |
321.2 |
| N07 |
C13 |
C12 |
C08 |
180.0 |
179.9 |
| C12 |
C13 |
C08 |
H08 |
180.1 |
179.7 |
| C13 |
C12 |
C11 |
H11 |
180.0 |
179.8 |
| C11 |
C12 |
N05 |
HN05 |
159.2 |
182.6 |
| N05 |
C12 |
C11 |
C13 |
179.8 |
180.6 |
| N07 |
C13 |
C12 |
C11 |
179.8 |
180.5 |
| N05 |
C12 |
C13 |
C08 |
180.0 |
180.0 |
| C08 |
C13 |
N07 |
O25 |
13.8 |
141.2 |
| N07 |
C13 |
C08 |
C12 |
180.0 |
180.1 |
| C09 |
C08 |
C13 |
H08 |
180.0 |
179.7 |
| C13 |
C08 |
C09 |
C14 |
180.3 |
180.2 |
| O22 |
C14 |
N02 |
H102 |
360.0 |
180.0 |
| O22 |
C14 |
N02 |
H202 |
180.0 |
0.0 |
| N02 |
C14 |
O22 |
C09 |
179.9 |
180.0 |
| C10 |
N01 |
C15 |
HN01 |
120.0 |
179.8 |
| C16 |
C15 |
N01 |
HN01 |
315.3 |
360.0 |
| H115 |
C15 |
C16 |
H215 |
120.0 |
120.0 |
| C17 |
C16 |
C15 |
C19 |
180.9 |
180.0 |
| C15 |
C16 |
C19 |
H19 |
1.0 |
0.0 |
| H115 |
C15 |
N01 |
HN01 |
75.3 |
120.0 |
| C16 |
C15 |
H115 |
H215 |
240.5 |
240.0 |
| H115 |
C15 |
C16 |
C19 |
293.7 |
330.0 |
| H215 |
C15 |
N01 |
HN01 |
195.3 |
240.0 |
| C16 |
C15 |
H215 |
H115 |
119.5 |
120.0 |
| H215 |
C15 |
C16 |
C19 |
173.7 |
210.0 |
| C19 |
C16 |
C15 |
H115 |
293.7 |
330.0 |
| C19 |
C16 |
C15 |
H215 |
173.7 |
210.0 |
| C16 |
C17 |
N03 |
C18 |
0.1 |
360.0 |
| C17 |
C16 |
C15 |
H115 |
114.7 |
150.0 |
| C17 |
C16 |
C15 |
H215 |
354.7 |
30.0 |
| C15 |
C16 |
C17 |
C19 |
179.1 |
180.0 |
| C17 |
C16 |
C19 |
H19 |
180.1 |
180.0 |
| C17 |
N03 |
C18 |
N04 |
0.1 |
0.0 |
| C17 |
N03 |
C18 |
N06 |
180.3 |
180.0 |
| H17 |
C17 |
N03 |
C18 |
180.1 |
180.0 |
| H17 |
C17 |
C16 |
C19 |
179.9 |
180.0 |
| N03 |
C18 |
N04 |
N06 |
180.3 |
180.0 |
| N03 |
C18 |
N06 |
N04 |
179.8 |
180.0 |
| H106 |
N06 |
C18 |
H206 |
240.0 |
180.0 |
| C21 |
C20 |
N05 |
HN05 |
101.6 |
360.0 |
| H120 |
C20 |
C21 |
H220 |
240.0 |
120.1 |
| H121 |
C21 |
C20 |
H221 |
240.0 |
240.0 |
| O23 |
C21 |
C20 |
H121 |
240.0 |
239.9 |
| O23 |
C21 |
C20 |
H221 |
120.0 |
120.0 |
| C12 |
N05 |
C20 |
HN05 |
120.0 |
180.0 |
| H120 |
C20 |
N05 |
HN05 |
341.6 |
119.9 |
| C21 |
C20 |
H120 |
H220 |
120.1 |
240.0 |
| H120 |
C20 |
C21 |
H121 |
177.0 |
65.1 |
| H120 |
C20 |
C21 |
H221 |
296.9 |
185.1 |
| H220 |
C20 |
N05 |
HN05 |
221.6 |
240.0 |
| C21 |
C20 |
H220 |
H120 |
239.9 |
120.0 |
| H220 |
C20 |
C21 |
H121 |
296.9 |
305.0 |
| H220 |
C20 |
C21 |
H221 |
56.9 |
65.0 |
| H121 |
C21 |
C20 |
H120 |
177.0 |
65.1 |
| H121 |
C21 |
C20 |
H220 |
296.9 |
305.0 |
| C20 |
C21 |
H121 |
H221 |
120.0 |
120.0 |
| O23 |
C21 |
H121 |
H221 |
240.0 |
240.0 |
| H221 |
C21 |
C20 |
H120 |
296.9 |
185.1 |
| H221 |
C21 |
C20 |
H220 |
56.9 |
65.0 |
| C20 |
C21 |
H221 |
H121 |
240.0 |
240.0 |
| O23 |
C21 |
H221 |
H121 |
120.0 |
120.0 |
| O23 |
C21 |
C20 |
H120 |
56.9 |
305.0 |
| O23 |
C21 |
C20 |
H220 |
176.9 |
185.0 |
| C20 |
C21 |
O23 |
H121 |
120.0 |
120.0 |
| C20 |
C21 |
O23 |
H221 |
240.0 |
240.0 |
| H121 |
C21 |
O23 |
H221 |
120.0 |
120.0 |
| HO23 |
O23 |
C21 |
H121 |
60.0 |
60.0 |
| HO23 |
O23 |
C21 |
H221 |
300.0 |
300.0 |
| C13 |
N07 |
O24 |
O25 |
180.0 |
180.1 |