PDB Chemical Component X62
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X62
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C08 |
1.296 |
1.389 |
| N01 |
C13 |
1.485 |
1.464 |
| N01 |
HN01 |
1.000 |
0.970 |
| N02 |
C12 |
1.362 |
1.348 |
| N02 |
H102 |
1.000 |
0.969 |
| N02 |
H202 |
1.000 |
0.970 |
| N03 |
C16 |
1.351 |
1.319 |
| N05 |
O20 |
1.319 |
1.218 |
| C06 |
C11 |
1.429 |
1.377 |
| C06 |
H06 |
1.080 |
1.080 |
| C07 |
C06 |
1.438 |
1.397 |
| C07 |
C08 |
1.434 |
1.404 |
| C08 |
C09 |
1.431 |
1.389 |
| C09 |
C10 |
1.409 |
1.382 |
| C09 |
H09 |
1.080 |
1.080 |
| C10 |
CL21 |
1.713 |
1.736 |
| C11 |
N05 |
1.299 |
1.480 |
| C11 |
C10 |
1.449 |
1.388 |
| C12 |
C07 |
1.376 |
1.474 |
| C13 |
C14 |
1.505 |
1.507 |
| C13 |
H113 |
1.100 |
1.090 |
| C13 |
H213 |
1.100 |
1.090 |
| C14 |
C17 |
1.391 |
1.386 |
| C15 |
C14 |
1.404 |
1.386 |
| C15 |
N03 |
1.364 |
1.323 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
N04 |
1.358 |
1.319 |
| C16 |
CL22 |
1.718 |
1.737 |
| C17 |
N04 |
1.369 |
1.324 |
| C17 |
H17 |
1.080 |
1.080 |
| O18 |
C12 |
1.225 |
1.216 |
| O19 |
N05 |
1.305 |
1.219 |
Bond Angles for X62
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C08 |
N01 |
C13 |
123.5 |
120.0 |
| C08 |
N01 |
HN01 |
105.1 |
120.0 |
| N01 |
C08 |
C07 |
120.4 |
120.2 |
| N01 |
C08 |
C09 |
120.5 |
120.2 |
| C13 |
N01 |
HN01 |
105.0 |
120.1 |
| N01 |
C13 |
C14 |
109.4 |
109.4 |
| N01 |
C13 |
H113 |
109.5 |
109.5 |
| N01 |
C13 |
H213 |
109.5 |
109.5 |
| C12 |
N02 |
H102 |
120.0 |
120.1 |
| C12 |
N02 |
H202 |
120.0 |
119.9 |
| N02 |
C12 |
C07 |
120.4 |
120.0 |
| H102 |
N02 |
H202 |
120.0 |
120.0 |
| C15 |
N03 |
C16 |
116.0 |
120.8 |
| N03 |
C16 |
N04 |
125.4 |
121.7 |
| N03 |
C16 |
CL22 |
117.0 |
119.2 |
| C11 |
N05 |
O20 |
121.9 |
120.0 |
| O19 |
N05 |
O20 |
117.6 |
120.0 |
| C11 |
C06 |
H06 |
119.3 |
120.0 |
| C07 |
C06 |
C11 |
121.4 |
119.9 |
| C06 |
C11 |
C10 |
118.3 |
120.3 |
| C07 |
C06 |
H06 |
119.3 |
120.0 |
| C07 |
C08 |
C09 |
119.2 |
119.6 |
| C08 |
C09 |
C10 |
121.5 |
120.0 |
| C08 |
C09 |
H09 |
119.3 |
120.0 |
| C10 |
C09 |
H09 |
119.3 |
119.9 |
| C09 |
C10 |
CL21 |
117.0 |
119.8 |
| C11 |
C10 |
CL21 |
122.8 |
119.8 |
| C14 |
C13 |
H113 |
109.5 |
109.4 |
| C14 |
C13 |
H213 |
109.5 |
109.4 |
| C13 |
C14 |
C17 |
122.6 |
120.8 |
| H113 |
C13 |
H213 |
109.4 |
109.5 |
| C15 |
C14 |
C17 |
114.7 |
118.4 |
| C14 |
C17 |
H17 |
118.2 |
120.4 |
Torsion Angles for X62
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
N01 |
C08 |
HN01 |
240.0 |
180.4 |
| C08 |
N01 |
C13 |
C14 |
99.0 |
180.0 |
| C08 |
N01 |
C13 |
H113 |
219.0 |
299.9 |
| C08 |
N01 |
C13 |
H213 |
339.0 |
60.0 |
| C07 |
C08 |
N01 |
C09 |
180.5 |
180.0 |
| N01 |
C08 |
C09 |
C10 |
180.0 |
180.0 |
| N01 |
C08 |
C09 |
H09 |
0.0 |
359.9 |
| C08 |
N01 |
C13 |
HN01 |
120.0 |
179.6 |
| C13 |
N01 |
C08 |
C07 |
157.3 |
174.4 |
| C13 |
N01 |
C08 |
C09 |
336.7 |
354.5 |
| C14 |
C13 |
N01 |
H113 |
240.0 |
240.0 |
| C14 |
C13 |
N01 |
H213 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
C17 |
214.0 |
90.0 |
| H113 |
C13 |
N01 |
H213 |
240.0 |
240.0 |
| C08 |
N01 |
HN01 |
C13 |
228.4 |
180.4 |
| HN01 |
N01 |
C08 |
C07 |
277.3 |
354.0 |
| HN01 |
N01 |
C08 |
C09 |
96.7 |
174.1 |
| HN01 |
N01 |
C13 |
C14 |
339.0 |
0.3 |
| HN01 |
N01 |
C13 |
H113 |
99.0 |
120.3 |
| HN01 |
N01 |
C13 |
H213 |
219.0 |
240.4 |
| H102 |
N02 |
C12 |
H202 |
180.0 |
180.1 |
| C12 |
N02 |
H102 |
H202 |
180.0 |
179.9 |
| H102 |
N02 |
C12 |
C07 |
182.9 |
0.1 |
| C12 |
N02 |
H202 |
H102 |
180.0 |
180.1 |
| H202 |
N02 |
C12 |
C07 |
2.8 |
180.0 |
| C06 |
C11 |
N05 |
O20 |
207.8 |
0.0 |
| C07 |
C06 |
C11 |
H06 |
180.0 |
179.8 |
| C06 |
C11 |
C10 |
CL21 |
181.3 |
180.0 |
| C07 |
C06 |
H06 |
C11 |
180.0 |
180.2 |
| H06 |
C06 |
C11 |
C10 |
179.6 |
180.2 |
| N01 |
C08 |
C07 |
C06 |
180.6 |
180.1 |
| N02 |
C12 |
C07 |
C06 |
28.1 |
5.8 |
| C11 |
C06 |
C07 |
H06 |
180.0 |
180.2 |
| C07 |
C06 |
C11 |
C10 |
359.6 |
0.0 |
| C07 |
C08 |
N01 |
C13 |
157.3 |
174.4 |
| C07 |
C08 |
N01 |
HN01 |
277.3 |
354.0 |
| N01 |
C08 |
C07 |
C09 |
179.5 |
180.0 |
| N02 |
C12 |
C07 |
C08 |
207.7 |
185.9 |
| C08 |
C07 |
C06 |
C11 |
359.4 |
359.9 |
| C08 |
C07 |
C06 |
H06 |
179.4 |
179.7 |
| C07 |
C08 |
C09 |
C10 |
359.5 |
0.0 |
| C07 |
C08 |
C09 |
H09 |
179.5 |
180.0 |
| C09 |
C08 |
N01 |
C13 |
336.7 |
354.5 |
| C09 |
C08 |
N01 |
HN01 |
96.7 |
174.1 |
| N01 |
C08 |
C09 |
C07 |
180.5 |
180.0 |
| C10 |
C09 |
C08 |
H09 |
180.0 |
180.1 |
| C08 |
C09 |
C10 |
CL21 |
179.1 |
180.0 |
| C06 |
C11 |
C10 |
C09 |
1.0 |
0.0 |
| C08 |
C09 |
C10 |
H09 |
180.0 |
179.9 |
| C11 |
C10 |
C09 |
CL21 |
180.3 |
179.9 |
| C08 |
C09 |
H09 |
C10 |
180.0 |
180.1 |
| H09 |
C09 |
C10 |
CL21 |
359.1 |
0.0 |
| CL21 |
C10 |
C09 |
H09 |
359.1 |
0.0 |
| O19 |
N05 |
C11 |
O20 |
177.8 |
180.0 |
| C10 |
C11 |
N05 |
O20 |
28.2 |
179.8 |
| C10 |
C11 |
C06 |
H06 |
179.6 |
180.2 |
| C11 |
C10 |
C09 |
H09 |
179.4 |
180.0 |
| C09 |
C10 |
C11 |
CL21 |
179.7 |
180.1 |
| C07 |
C12 |
N02 |
H102 |
182.9 |
0.1 |
| C07 |
C12 |
N02 |
H202 |
2.8 |
180.0 |
| C12 |
C07 |
C06 |
H06 |
359.0 |
359.8 |
| C14 |
C13 |
N01 |
HN01 |
339.0 |
0.3 |
| N01 |
C13 |
C14 |
H113 |
120.0 |
120.0 |
| N01 |
C13 |
C14 |
H213 |
240.0 |
240.0 |
| H113 |
C13 |
C14 |
H213 |
120.0 |
119.9 |
| C15 |
C14 |
C13 |
C17 |
179.8 |
180.0 |
| C13 |
C14 |
C17 |
H17 |
0.0 |
360.0 |
| H113 |
C13 |
N01 |
HN01 |
99.0 |
120.3 |
| N01 |
C13 |
H113 |
C14 |
240.0 |
240.0 |
| N01 |
C13 |
H113 |
H213 |
120.0 |
120.1 |
| C14 |
C13 |
H113 |
H213 |
240.0 |
240.1 |
| H113 |
C13 |
C14 |
C17 |
94.0 |
330.0 |
| H213 |
C13 |
N01 |
HN01 |
219.0 |
240.4 |
| N01 |
C13 |
H213 |
C14 |
120.0 |
120.0 |
| N01 |
C13 |
H213 |
H113 |
240.0 |
239.9 |
| C14 |
C13 |
H213 |
H113 |
120.0 |
119.9 |
| H213 |
C13 |
C14 |
C17 |
334.0 |
210.0 |
| C17 |
C14 |
C13 |
H113 |
94.0 |
330.0 |
| C17 |
C14 |
C13 |
H213 |
334.0 |
210.0 |
| C14 |
C15 |
N03 |
C16 |
360.0 |
0.0 |
| C15 |
C14 |
C13 |
H113 |
273.8 |
150.0 |
| C15 |
C14 |
C13 |
H213 |
153.8 |
30.0 |
| C13 |
C14 |
C15 |
C17 |
180.2 |
180.0 |
| C15 |
C14 |
C17 |
H17 |
180.2 |
180.0 |
| C15 |
N03 |
C16 |
N04 |
0.2 |
0.0 |
| C15 |
N03 |
C16 |
CL22 |
180.3 |
180.0 |
| H15 |
C15 |
N03 |
C16 |
180.0 |
180.0 |
| H15 |
C15 |
C14 |
C17 |
179.8 |
180.0 |
| N03 |
C16 |
N04 |
CL22 |
180.1 |
180.0 |
| N03 |
C16 |
CL22 |
N04 |
179.9 |
180.0 |
| O18 |
C12 |
N02 |
H102 |
0.0 |
180.1 |
| O18 |
C12 |
N02 |
H202 |
180.0 |
360.0 |
| C11 |
N05 |
O19 |
O20 |
182.1 |
180.0 |