PDB Chemical Component X4B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X4B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C11 |
1.367 |
1.348 |
| N01 |
H101 |
1.000 |
0.970 |
| N01 |
H201 |
1.000 |
0.970 |
| N02 |
C07 |
1.307 |
1.389 |
| N02 |
C12 |
1.491 |
1.465 |
| N02 |
HN02 |
1.000 |
0.970 |
| N04 |
O20 |
1.312 |
1.217 |
| C05 |
C10 |
1.428 |
1.378 |
| C05 |
H05 |
1.080 |
1.080 |
| C06 |
C05 |
1.434 |
1.397 |
| C06 |
C07 |
1.434 |
1.404 |
| C07 |
C08 |
1.438 |
1.388 |
| C08 |
C09 |
1.423 |
1.382 |
| C08 |
H08 |
1.080 |
1.080 |
| C09 |
CL21 |
1.719 |
1.735 |
| C10 |
N04 |
1.299 |
1.479 |
| C10 |
C09 |
1.445 |
1.387 |
| C11 |
C06 |
1.374 |
1.474 |
| C12 |
C13 |
1.511 |
1.507 |
| C12 |
H112 |
1.100 |
1.089 |
| C12 |
H212 |
1.100 |
1.090 |
| C13 |
C14 |
1.409 |
1.382 |
| C14 |
N03 |
1.377 |
1.319 |
| C14 |
H14 |
1.079 |
1.079 |
| C15 |
N03 |
1.379 |
1.319 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
C15 |
1.406 |
1.382 |
| C16 |
H16 |
1.080 |
1.081 |
| C17 |
C13 |
1.421 |
1.387 |
| C17 |
C16 |
1.419 |
1.386 |
| C17 |
H17 |
1.080 |
1.081 |
| O18 |
C11 |
1.225 |
1.216 |
| O19 |
N04 |
1.311 |
1.218 |
Bond Angles for X4B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
N01 |
H101 |
120.0 |
120.0 |
| C11 |
N01 |
H201 |
120.0 |
119.9 |
| N01 |
C11 |
C06 |
119.5 |
120.0 |
| H101 |
N01 |
H201 |
120.0 |
120.0 |
| C07 |
N02 |
C12 |
123.6 |
120.0 |
| C07 |
N02 |
HN02 |
105.0 |
120.0 |
| N02 |
C07 |
C06 |
120.2 |
120.1 |
| N02 |
C07 |
C08 |
121.1 |
120.2 |
| C12 |
N02 |
HN02 |
105.0 |
120.0 |
| N02 |
C12 |
C13 |
110.3 |
109.4 |
| N02 |
C12 |
H112 |
109.2 |
109.5 |
| N02 |
C12 |
H212 |
109.2 |
109.5 |
| C10 |
N04 |
O20 |
122.0 |
120.0 |
| O19 |
N04 |
O20 |
117.7 |
120.0 |
| C10 |
C05 |
H05 |
119.1 |
120.0 |
| C06 |
C05 |
C10 |
121.9 |
120.0 |
| C05 |
C10 |
C09 |
118.3 |
120.3 |
| C06 |
C05 |
H05 |
119.0 |
120.0 |
| C06 |
C07 |
C08 |
118.7 |
119.7 |
| C07 |
C08 |
C09 |
121.5 |
120.1 |
| C07 |
C08 |
H08 |
119.3 |
120.0 |
| C09 |
C08 |
H08 |
119.2 |
120.0 |
| C08 |
C09 |
CL21 |
117.8 |
119.8 |
| C10 |
C09 |
CL21 |
122.2 |
119.8 |
| C13 |
C12 |
H112 |
109.2 |
109.5 |
| C13 |
C12 |
H212 |
109.2 |
109.4 |
| C12 |
C13 |
C14 |
120.8 |
120.4 |
| H112 |
C12 |
H212 |
109.8 |
109.5 |
| C13 |
C14 |
H14 |
118.4 |
119.6 |
| C16 |
C15 |
H15 |
118.4 |
119.6 |
| C17 |
C16 |
H16 |
121.1 |
120.4 |
Torsion Angles for X4B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H101 |
N01 |
C11 |
H201 |
180.0 |
180.4 |
| C11 |
N01 |
H101 |
H201 |
180.0 |
179.6 |
| H101 |
N01 |
C11 |
C06 |
181.6 |
0.1 |
| C11 |
N01 |
H201 |
H101 |
180.0 |
180.4 |
| H201 |
N01 |
C11 |
C06 |
1.5 |
179.7 |
| C12 |
N02 |
C07 |
HN02 |
240.0 |
180.1 |
| C07 |
N02 |
C12 |
C13 |
95.8 |
180.0 |
| C07 |
N02 |
C12 |
H112 |
215.8 |
300.0 |
| C07 |
N02 |
C12 |
H212 |
335.8 |
60.0 |
| C06 |
C07 |
N02 |
C08 |
180.3 |
180.0 |
| N02 |
C07 |
C08 |
C09 |
180.1 |
180.0 |
| N02 |
C07 |
C08 |
H08 |
0.1 |
0.0 |
| C07 |
N02 |
C12 |
HN02 |
120.0 |
179.9 |
| C12 |
N02 |
C07 |
C06 |
159.7 |
174.4 |
| C12 |
N02 |
C07 |
C08 |
339.4 |
354.4 |
| C13 |
C12 |
N02 |
H112 |
240.0 |
240.0 |
| C13 |
C12 |
N02 |
H212 |
120.0 |
119.9 |
| N02 |
C12 |
C13 |
C14 |
228.8 |
90.0 |
| H112 |
C12 |
N02 |
H212 |
240.0 |
239.9 |
| C07 |
N02 |
HN02 |
C12 |
228.3 |
180.1 |
| HN02 |
N02 |
C07 |
C06 |
279.7 |
354.4 |
| HN02 |
N02 |
C07 |
C08 |
99.4 |
174.4 |
| HN02 |
N02 |
C12 |
C13 |
335.8 |
0.0 |
| HN02 |
N02 |
C12 |
H112 |
95.8 |
120.0 |
| HN02 |
N02 |
C12 |
H212 |
215.8 |
240.1 |
| C05 |
C10 |
N04 |
O20 |
207.6 |
0.0 |
| C06 |
C05 |
C10 |
H05 |
180.0 |
179.7 |
| C05 |
C10 |
C09 |
CL21 |
181.0 |
180.0 |
| C06 |
C05 |
H05 |
C10 |
180.0 |
180.3 |
| H05 |
C05 |
C10 |
C09 |
179.7 |
180.2 |
| N01 |
C11 |
C06 |
C05 |
28.2 |
5.9 |
| N02 |
C07 |
C06 |
C05 |
180.3 |
180.0 |
| C10 |
C05 |
C06 |
H05 |
180.0 |
180.3 |
| C06 |
C05 |
C10 |
C09 |
359.7 |
359.9 |
| N01 |
C11 |
C06 |
C07 |
208.0 |
185.8 |
| C06 |
C07 |
N02 |
C12 |
159.7 |
174.4 |
| C06 |
C07 |
N02 |
HN02 |
279.7 |
354.4 |
| N02 |
C07 |
C06 |
C08 |
179.7 |
180.0 |
| C07 |
C06 |
C05 |
C10 |
359.6 |
0.0 |
| C07 |
C06 |
C05 |
H05 |
179.6 |
179.7 |
| C06 |
C07 |
C08 |
C09 |
359.8 |
0.0 |
| C06 |
C07 |
C08 |
H08 |
179.8 |
180.0 |
| C08 |
C07 |
N02 |
C12 |
339.4 |
354.4 |
| C08 |
C07 |
N02 |
HN02 |
99.4 |
174.4 |
| N02 |
C07 |
C08 |
C06 |
180.3 |
180.0 |
| C09 |
C08 |
C07 |
H08 |
180.0 |
180.0 |
| C07 |
C08 |
C09 |
CL21 |
179.3 |
180.0 |
| C05 |
C10 |
C09 |
C08 |
0.7 |
0.1 |
| C07 |
C08 |
C09 |
H08 |
180.0 |
180.0 |
| C10 |
C09 |
C08 |
CL21 |
180.3 |
179.9 |
| C07 |
C08 |
H08 |
C09 |
180.0 |
180.0 |
| H08 |
C08 |
C09 |
CL21 |
359.3 |
0.0 |
| CL21 |
C09 |
C08 |
H08 |
359.3 |
0.0 |
| O19 |
N04 |
C10 |
O20 |
178.3 |
180.0 |
| C09 |
C10 |
N04 |
O20 |
27.9 |
179.8 |
| C09 |
C10 |
C05 |
H05 |
179.7 |
180.2 |
| C10 |
C09 |
C08 |
H08 |
179.6 |
179.9 |
| C08 |
C09 |
C10 |
CL21 |
179.7 |
180.1 |
| C06 |
C11 |
N01 |
H101 |
181.6 |
0.1 |
| C06 |
C11 |
N01 |
H201 |
1.5 |
179.7 |
| C11 |
C06 |
C05 |
H05 |
359.4 |
359.7 |
| C13 |
C12 |
N02 |
HN02 |
335.8 |
0.0 |
| N02 |
C12 |
C13 |
H112 |
120.0 |
120.0 |
| N02 |
C12 |
C13 |
H212 |
240.0 |
240.0 |
| H112 |
C12 |
C13 |
H212 |
120.0 |
120.0 |
| C12 |
C13 |
C14 |
H14 |
0.1 |
0.0 |
| H112 |
C12 |
N02 |
HN02 |
95.8 |
120.0 |
| N02 |
C12 |
H112 |
C13 |
239.3 |
240.0 |
| N02 |
C12 |
H112 |
H212 |
119.6 |
120.1 |
| C13 |
C12 |
H112 |
H212 |
240.3 |
240.1 |
| H112 |
C12 |
C13 |
C14 |
108.8 |
330.0 |
| H212 |
C12 |
N02 |
HN02 |
215.8 |
240.1 |
| N02 |
C12 |
H212 |
C13 |
120.7 |
120.0 |
| N02 |
C12 |
H212 |
H112 |
240.4 |
239.9 |
| C13 |
C12 |
H212 |
H112 |
119.7 |
120.0 |
| H212 |
C12 |
C13 |
C14 |
348.7 |
210.0 |
| C14 |
C13 |
C12 |
H112 |
108.8 |
330.0 |
| C14 |
C13 |
C12 |
H212 |
348.7 |
210.0 |
| H16 |
C16 |
C15 |
H15 |
0.1 |
360.0 |
| C17 |
C13 |
C12 |
H112 |
288.7 |
149.9 |
| C17 |
C13 |
C12 |
H212 |
168.7 |
30.0 |
| C17 |
C13 |
C14 |
H14 |
180.1 |
180.1 |
| C17 |
C16 |
C15 |
H15 |
180.1 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
0.0 |
0.1 |
| O18 |
C11 |
N01 |
H101 |
360.0 |
180.0 |
| O18 |
C11 |
N01 |
H201 |
180.0 |
359.7 |
| C10 |
N04 |
O19 |
O20 |
181.6 |
180.0 |