PDB Chemical Component X46

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X46

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.491	1.388
C1	C5	1.482	1.383
N1	C13	1.365	1.312
N1	C14	1.359	1.302
S1	C12	1.697	1.761
S1	C14	1.719	1.709
C2	C3	1.455	1.385
C2	O6	1.428	1.359
N2	C13	1.359	1.386
C3	C10	1.488	1.395
N3	C14	1.398	1.377
N3	C15	1.410	1.397
O3	C11	1.355	1.220
C4	C5	1.452	1.380
C4	C10	1.481	1.396
O6	C7	1.337	1.429
C10	C11	1.506	1.480
C11	C12	1.514	1.408
C12	C13	1.391	1.382
C15	C16	1.522	1.389
C15	C20	1.477	1.389
C16	C17	1.436	1.381
C17	C18	1.465	1.383
C18	C19	1.480	1.383
C19	C20	1.445	1.381
C1	H1	1.080	1.080
N2	HN2	0.999	0.970
N2	HN2A	1.000	0.970
C3	H3	1.080	1.080
N3	HN3	1.000	0.970
C4	H4	1.080	1.080
C5	H5	1.080	1.079
C7	H7	1.100	1.090
C7	H7A	1.100	1.089
C7	H7B	1.100	1.090
C16	H16	1.080	1.080
C17	H17	1.080	1.081
C18	H18	1.080	1.080
C19	H19	1.080	1.079
C20	H20	1.080	1.081

Bond Angles for X46

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	120.5	120.2
C1	C2	C3	119.2	120.0
C1	C2	O6	123.2	120.0
C2	C1	H1	119.8	119.9
C1	C5	C4	119.3	120.2
C5	C1	H1	119.8	119.9
C1	C5	H5	120.3	119.9
C13	N1	C14	111.0	117.3
N1	C13	N2	122.6	123.2
N1	C13	C12	113.7	113.6
N1	C14	S1	113.8	110.8
N1	C14	N3	120.8	124.6
C12	S1	C14	89.8	90.5
S1	C12	C11	121.7	126.1
S1	C12	C13	111.6	107.7
S1	C14	N3	125.4	124.6
C3	C2	O6	117.6	120.0
C2	C3	C10	120.9	119.8
C2	C3	H3	119.5	120.1
C2	O6	C7	125.9	117.0
N2	C13	C12	123.6	123.2
C13	N2	HN2	109.5	120.0
C13	N2	HN2A	109.5	120.0
C3	C10	C4	118.7	119.8
C3	C10	C11	121.6	120.1
C10	C3	H3	119.5	120.1
C14	N3	C15	129.5	120.0
C14	N3	HN3	115.3	120.0
N3	C15	C16	125.1	120.1
N3	C15	C20	117.5	120.1
C15	N3	HN3	115.2	120.0
O3	C11	C10	120.8	120.0
O3	C11	C12	118.5	120.0
C5	C4	C10	121.3	120.0
C5	C4	H4	119.3	120.0
C4	C5	H5	120.4	119.9
C4	C10	C11	119.7	120.1
C10	C4	H4	119.3	120.0
O6	C7	H7	109.5	109.5
O6	C7	H7A	109.5	109.5
O6	C7	H7B	109.5	109.4
C10	C11	C12	120.7	120.0
C11	C12	C13	126.7	126.2
C16	C15	C20	117.4	119.8
C15	C16	C17	121.8	119.9
C15	C16	H16	119.1	120.1
C15	C20	C19	120.5	120.0
C15	C20	H20	119.8	120.0
C16	C17	C18	119.3	120.1
C17	C16	H16	119.1	120.0
C16	C17	H17	120.4	119.9
C17	C18	C19	120.2	120.1
C18	C17	H17	120.3	119.9
C17	C18	H18	119.9	119.9
C18	C19	C20	120.9	120.0
C19	C18	H18	119.9	119.9
C18	C19	H19	119.5	119.9
C20	C19	H19	119.6	120.0
C19	C20	H20	119.7	120.0
HN2	N2	HN2A	109.5	120.0
H7	C7	H7A	109.5	109.5
H7	C7	H7B	109.4	109.4
H7A	C7	H7B	109.5	109.5

Torsion Angles for X46

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	C4	359.9	0.0
C5	C1	C2	H1	180.0	180.3
C2	C1	C5	H5	179.9	179.9
C3	C2	C1	O6	179.9	180.0
C1	C2	C3	C10	0.2	360.0
C1	C2	C3	H3	180.2	180.0
C1	C2	O6	C7	360.0	0.0
C5	C1	C2	C3	359.9	0.0
C5	C1	C2	O6	180.0	180.0
C2	C1	C5	H1	180.0	179.7
C1	C5	C4	C10	0.1	360.0
C1	C5	C4	H4	180.1	180.0
C4	C5	C1	H5	180.0	180.1
C13	N1	C14	S1	0.1	360.0
C13	N1	C14	N3	180.0	180.0
S1	C12	C13	N1	359.6	0.0
N2	C13	N1	C12	179.4	180.0
N1	C13	N2	HN2	360.0	359.9
N1	C13	N2	HN2A	120.0	180.0
C11	C12	C13	N1	179.2	180.0
C14	N1	C13	N2	179.6	180.0
C14	N1	C13	C12	0.2	360.0
C12	S1	C14	N1	359.7	0.0
S1	C14	N1	N3	180.1	180.0
N1	C14	N3	C15	163.5	356.3
N1	C14	N3	HN3	343.5	176.3
N1	C13	C12	S1	359.6	0.0
N1	C14	S1	C12	359.7	0.0
C12	S1	C14	N3	179.8	180.0
N2	C13	C12	S1	180.2	180.0
O3	C11	C12	S1	179.5	186.9
C10	C11	C12	S1	0.2	6.9
C11	C12	S1	C13	180.4	180.0
N1	C14	S1	N3	179.9	180.0
C14	S1	C12	C11	180.8	180.0
C14	S1	C12	C13	0.4	360.0
S1	C14	N3	C15	343.4	176.3
S1	C14	N3	HN3	163.4	356.2
C3	C2	C1	C5	359.9	0.0
C1	C2	C3	O6	180.0	180.0
C3	C2	C1	H1	179.9	179.7
C3	C2	O6	C7	180.0	180.0
C2	C3	C10	C4	359.9	0.0
C2	C3	C10	C11	179.7	180.0
C10	C3	C2	H3	180.0	180.0
O6	C2	C1	C5	180.0	180.0
C1	C2	O6	C3	179.9	180.0
O6	C2	C1	H1	360.0	359.7
O6	C2	C3	C10	180.1	180.0
O6	C2	C3	H3	0.2	0.0
C2	O6	C7	H7	180.0	300.0
C2	O6	C7	H7A	300.0	60.0
C2	O6	C7	H7B	60.0	180.0
N2	C13	N1	C14	179.6	180.0
N1	C13	N2	C12	180.6	180.0
S1	C12	C13	N2	180.2	180.0
C11	C12	C13	N2	359.7	360.0
HN2	N2	C13	HN2A	240.0	179.9
C10	C3	C2	O6	180.1	180.0
C2	C3	C10	H3	180.0	180.0
O3	C11	C10	C3	131.2	26.1
C5	C4	C10	C3	360.0	0.0
C4	C10	C3	C11	180.2	180.0
C3	C10	C4	H4	179.9	180.0
C3	C10	C11	C12	310.5	206.0
N1	C14	N3	S1	180.1	180.0
C14	N3	C15	C16	359.6	148.0
C14	N3	C15	C20	179.4	327.8
C15	N3	C14	HN3	180.0	180.1
C14	N3	C15	HN3	180.0	179.9
C16	C15	N3	C20	180.3	180.3
N3	C15	C16	C17	179.7	180.0
N3	C15	C16	H16	359.6	360.0
N3	C15	C20	C19	180.4	179.7
N3	C15	C20	H20	0.4	360.0
S1	C12	C11	O3	179.5	186.9
C3	C10	C11	O3	131.2	26.1
C4	C10	C11	O3	311.0	206.0
C10	C11	O3	C12	179.3	179.9
O3	C11	C12	C13	360.0	6.9
C4	C5	C1	H1	179.9	180.3
C1	C5	C4	H5	180.0	179.9
C3	C10	C4	C5	360.0	0.0
C5	C4	C10	C11	180.2	180.1
C10	C4	C5	H4	180.0	179.9
C3	C10	C4	C11	179.8	180.0
C4	C10	C3	H3	179.8	180.0
O3	C11	C10	C4	311.0	206.0
C5	C4	C10	H4	180.0	180.1
C10	C4	C5	H5	180.1	180.1
C4	C10	C11	C12	130.3	26.0
H7	C7	O6	H7A	240.0	240.0
H7	C7	O6	H7B	120.0	120.0
H7A	C7	O6	H7B	240.0	240.0
S1	C12	C11	C10	0.2	6.9
C3	C10	C11	C4	180.2	180.0
C11	C10	C3	H3	359.6	359.9
O3	C11	C10	C12	180.7	180.1
C11	C10	C4	H4	0.2	0.0
C10	C11	C12	C13	180.6	186.9
N1	C13	C12	C11	179.2	180.0
C11	C12	S1	C14	180.8	180.0
S1	C12	C11	C13	179.5	180.0
N2	C13	C12	C11	359.7	360.0
O3	C11	C12	C10	179.3	179.9
C12	C13	N1	C14	0.2	360.0
N1	C13	C12	N2	179.4	180.0
C13	C12	S1	C14	0.4	360.0
S1	C12	C13	C11	180.4	180.0
C12	C13	N2	HN2	179.4	179.9
C12	C13	N2	HN2A	299.4	0.1
N3	C15	C16	C20	179.7	179.7
C16	C15	N3	HN3	179.7	328.1
C16	C15	C20	C19	0.1	359.4
C16	C15	C20	H20	180.2	179.7
C15	C16	C17	C18	359.9	0.0
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	H17	179.9	180.0
N3	C15	C20	C16	180.3	180.3
C20	C15	N3	HN3	359.4	147.9
C20	C15	C16	C17	359.9	0.2
C20	C15	C16	H16	179.9	180.2
C18	C19	C20	C15	360.0	0.6
C15	C20	C19	H19	180.0	180.3
C19	C20	C15	H20	180.0	179.7
C17	C16	C15	C20	359.9	0.2
C15	C16	C17	H16	180.0	180.0
C16	C17	C18	C19	0.2	360.0
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	H18	180.2	179.9
C18	C17	C16	H16	179.9	180.1
C16	C17	C18	H17	180.0	180.0
C17	C18	C19	C20	359.9	359.7
C19	C18	C17	H18	180.0	180.0
C17	C18	C19	H19	179.9	180.0
C15	C20	C19	C18	360.0	0.6
C19	C18	C17	H17	180.2	180.0
C17	C18	C19	H18	180.0	180.0
C20	C19	C18	H19	180.0	179.7
C18	C19	C20	H20	179.9	180.3
C15	C20	C19	H20	180.0	180.3
C20	C19	C18	H18	179.9	179.7
C18	C19	C20	H19	180.0	180.3
C2	C1	H1	C5	180.0	180.3
H1	C1	C2	C3	179.9	179.7
H1	C1	C2	O6	360.0	359.7
H1	C1	C5	C4	179.9	180.3
H1	C1	C5	H5	359.9	0.2
HN2	N2	C13	C12	179.4	179.9
C13	N2	HN2	HN2A	120.0	180.1
HN2A	N2	C13	C12	299.4	0.1
C13	N2	HN2A	HN2	240.0	179.9
H3	C3	C2	O6	0.2	0.0
C2	C3	H3	C10	180.0	180.0
H3	C3	C10	C4	179.8	180.0
H3	C3	C10	C11	359.6	359.9
C14	N3	HN3	C15	180.0	180.1
HN3	N3	C15	C16	179.7	328.1
HN3	N3	C15	C20	359.4	147.9
C5	C4	H4	C10	180.0	179.9
H4	C4	C5	H5	0.1	0.1
H4	C4	C10	C11	0.2	0.0
C1	C5	H5	C4	180.0	180.1
H5	C5	C1	H1	359.9	0.2
H5	C5	C4	C10	180.1	180.1
H5	C5	C4	H4	0.1	0.1
O6	C7	H7	H7A	120.0	120.0
O6	C7	H7	H7B	240.0	240.0
H7A	C7	H7	H7B	120.0	120.0
O6	C7	H7A	H7	240.0	240.0
O6	C7	H7A	H7B	120.0	120.0
H7	C7	H7A	H7B	240.0	240.0
O6	C7	H7B	H7	120.0	120.0
O6	C7	H7B	H7A	240.0	240.0
H7	C7	H7B	H7A	120.0	120.0
H16	C16	C15	C20	179.9	180.2
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	179.9	180.1
H16	C16	C17	H17	359.9	0.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C16	H16	359.9	0.0
H17	C17	C18	C19	180.2	180.0
H17	C17	C18	H18	0.2	360.0
C17	C18	H18	C19	180.0	180.0
H18	C18	C17	H17	0.2	360.0
H18	C18	C19	C20	179.9	179.7
H18	C18	C19	H19	359.9	0.1
C18	C19	H19	C20	180.0	179.7
H19	C19	C18	H18	359.9	0.1
H19	C19	C20	H20	359.9	360.0
C15	C20	H20	C19	180.0	179.7
H20	C20	C19	H19	359.9	360.0